FFCP PHASE1:Hg19::chr6:160101581..160101593,-: Difference between revisions
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(Created page with "{{FFCP
|id=chr6:160101581..160101593,-
|short_description=p18@SOD2
|description=CAGE_peak_18_at_SOD2_5end
|association_with_transcript=-178bp_to_uc003qsf.3_5end
|EntrezGe...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=6648 | |EntrezGene=6648 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=11180 | |HGNC=11180 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-178bp_to_uc003qsf.3_5end | |||
|cluster_id=chr6:160101581..160101593,- | |||
|coexpression_cluster_id=C954 | |||
|description=CAGE_peak_18_at_SOD2_5end | |||
|id=chr6:160101581..160101593,- | |||
|ontology_enrichment_celltype=CL:0002057!4.74e-20!42;CL:0000860!1.38e-18!45;CL:0002194!1.01e-15!63;CL:0000576!1.01e-15!63;CL:0000040!1.01e-15!63;CL:0000559!1.01e-15!63;CL:0002009!1.09e-14!65;CL:0000839!4.32e-13!70;CL:0000766!8.60e-13!76;CL:0000557!5.36e-12!71 | |||
|ontology_enrichment_celltype_v019=CL:0000860;6.29e-43;33!CL:0002057;6.29e-43;33!CL:0000473;4.00e-34;39!CL:0000234;4.00e-34;39!CL:0000576;1.22e-23;48!CL:0000766;2.15e-17;69!CL:0002595;7.35e-08;5!CL:0000763;4.04e-07;100 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,2.32e-45,42;CL:0002057,2.32e-45,42;CL:0000473,2.88e-44,48;CL:0000234,2.88e-44,48;CL:0002194,1.83e-33,59;CL:0000576,1.83e-33,59;CL:0000040,1.83e-33,59;CL:0000559,1.83e-33,59;CL:0002009,4.48e-32,61;CL:0000766,1.11e-31,72;CL:0000839,5.74e-29,66;CL:0000557,2.11e-28,67;CL:0000763,6.91e-18,108;CL:0000049,6.91e-18,108;CL:0002087,6.61e-13,115;CL:0000738,2.70e-12,136;CL:0002031,5.06e-12,120;CL:0000048,3.25e-09,427;CL:0002032,5.01e-09,161;CL:0000837,5.01e-09,161;CL:0000034,6.07e-09,441;CL:0000723,7.22e-09,433;CL:0000037,2.67e-08,168;CL:0002595,1.20e-07,5;CL:0000988,1.84e-07,177;CL:0000134,2.05e-07,354;CL:0002320,5.03e-07,361 | |||
|ontology_enrichment_development_v019=CL:0002057;2.01e-33;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002204!2.09e-12!167;UBERON:0002390!2.59e-12!102;UBERON:0003061!2.59e-12!102;UBERON:0002193!4.55e-12!112;UBERON:0000926!2.77e-11!448;UBERON:0004120!2.77e-11!448;UBERON:0006603!2.77e-11!448;UBERON:0002371!5.00e-11!80;UBERON:0007023!7.26e-11!115;UBERON:0001474!8.20e-11!86;UBERON:0004765!1.74e-10!101;UBERON:0001434!1.74e-10!101;UBERON:0002405!2.75e-09!115;UBERON:0000923!2.68e-08!604;UBERON:0005291!2.68e-08!604;UBERON:0006598!2.68e-08!604;UBERON:0002532!2.68e-08!604;UBERON:0003081!2.89e-08!216;UBERON:0002050!3.51e-08!605;UBERON:0005423!3.51e-08!605;UBERON:0000467!4.82e-08!625;UBERON:0000480!6.28e-08!626;UBERON:0000922!6.35e-08!612;UBERON:0000468!1.84e-07!659 | |||
|ontology_enrichment_uberon_v019=UBERON:0004151;3.50e-08;3!UBERON:0003834;7.35e-08;5!UBERON:0001533;7.35e-08;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002193,4.88e-28,108;UBERON:0002390,1.04e-26,98;UBERON:0003061,1.04e-26,98;UBERON:0002371,9.17e-26,76;UBERON:0002405,4.57e-24,93;UBERON:0001474,3.32e-23,82;UBERON:0003081,1.56e-21,203;UBERON:0004765,2.49e-20,90;UBERON:0001434,3.28e-20,100;UBERON:0002204,2.22e-18,167;UBERON:0000926,1.88e-14,315;UBERON:0004120,1.88e-14,315;UBERON:0006603,1.88e-14,315;UBERON:0004151,3.02e-08,3;UBERON:0003834,1.20e-07,5;UBERON:0001533,1.20e-07,5 | |||
|phase1_expression=0,0.214100523890983,0.140954404095971,1.0007329835313,1.34088328328186,0,0,0,0.522371256399677,0,0,0,0,0.123766352960047,0.331397375727916,1.34465029290355,1.20538905604795,1.46062018077475,2.92759679274304,0,0,0,0,0,0,0,0.0821005894499457,0,0,0,0,0,0,0,0,0.142169232487422,0,2.76997704265939,3.20871115952227,1.08505435357926,0.671746422719773,0,0,0.436194716338694,0,0.242584061187816,3.71886459049095,3.70051099219643,1.23882548358041,4.89077066947656,1.5369642391746,1.41889337933151,5.17118521104928,4.51839278508678,1.35426486594342,1.31769637679823,1.09162460023138,1.57306439111559,6.12167784741805,1.92557416245656,6.39337125799041,2.96866170168044,1.39624560335142,2.55734850319616,7.83564944297177,11.3477044938228,7.4738669879469,2.76373531782418,4.69334626578181,1.08594422352558,7.87019353423379,2.57794345191295,4.1140110367315,0,0.212604299965044,0,0.112328631146495,0,0,0.285012743741249,0,0.182664153764634,0,0,0,0,0,0,0,0,0,0,0,0,1.12101712596307,0,0,0,0.205601498999509,0,0,0,0,0,0,0,0,0,0.130059347559878,0.164437904603676,0,0,0,0,0,0.113309342697566,0,0,0,0,0,0,0,0,0,0,0,0.201606743224732,0,0,0,0,0.12786256184353,0.361439152384566,0,0.144846518960824,0,0,0,0,0,0.130979075497713,0,0,0,0,0,0.238490624305342,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.183201743930407,1.31780417436063,0,0,0,0.25326102332916,0.264818361626438,0,0,0,0,0,0,1.48181739276657,0.163461903113459,0.151357427644931,0,0,0.624320153660641,0,0,0.352303495931295,0,0.140450806702248,0,0,0,0,1.7308685049499,0,0,0,0,0,0,0,0.751190294532984,0.113432183160021,0,0,0,0,0.103052529238439,0,0,0,0,0,0.184099797284599,0.161646056818812,0,0,0,0,0,0,0.121973706129595,0,0,0.207322110030741,0,0,0,0,0,0.464367928031979,0,0,0.168584690078102,0,0.220587945464788,0,0.237270619111097,0.404493924480493,0.196221465125346,0,0,0,0,0,2.53510069643662,1.96565443335525,1.18157981336281,0,0,0,0,0,0,0.277765335475589,0,0,0,0,0,1.58803092537181,4.1668696131895,2.47330397904978,0,0,0,0.702012795417713,0.891786973732369,0,0.16798212819886,0,0.268675568108545,0,0,0,0,0,0,0,0.063497894292169,0,0,0,0,0,0,0,0,0,0.904902010304444,0,0,0,0,0,0,0,0.142977993658148,0,0,0,0,0,1.80863626235752,0,0.299918973546171,0,1.00451418286425,4.21667878966063,0,0,0,0.434343920002738,0.205476322550383,0,0,0,0,0,0.254094624222463,0,0,0,0.637938751653163,3.74503511973591,0,1.24324654030811,0.36807447515742,0,0.542530047399471,0,0,0,0,0.300946099727719,0,0,0,0,0,0,0,0,0.215714200818617,0.533637789017222,0,0,0,0,0,0.280660094433074,0,0,0,0,0.154209693802656,0,0,0,0.348631135379878,0,0,0,0,0,0.786746489756545,0,0,0,0,0,0,0.170093705276516,0.215915916102139,0,0,0,0.254876273045038,0,0,0.219259876645935,0,0,0,0,1.13345112812495,0,0.082509499920588,0,0,0,0.193341436584244,0.462145851343933,0.307007349452259,0.551346289938122,0,0.145016693914229,0,0.0890320356467374,0,0.576570202095319,0,0.2023155617111,0,0,0,0.308033580176089,0,0,0,0.143124886741991,0,0,0.38126038784765,0,0.42793898803392,0,0,0.179872457583315,0,0.117812402345686,0,0,0.421258456238981,0,3.1682753652067,1.05650146756755,0.272999822815972,0,0,0,1.32687795048244,2.19225442626881,0,0,0.405820753925408,0,0.281695602532241,0.143411352204052,0.294747123039363,0,0,1.47775344708365,6.58589785919804,0,0,0.0962221127255121,0,0,0.847294206991012,0,0,0,0,1.01489521846434,3.0585488285695,2.27858874869665,0.714695326373367,1.23408681925858,1.94541993357815,1.08006287447623,0.79312517629427,0,0,0.245040215981032,0,0.144269212976445,0,0.159426272728822,0,0,0,0,0,0,0,0,0,0.1605880751037,0,0,0,0,0,0,0,0,0,0,0.33307196799782,0,0,0.73254089635947,0,0,0,0,0,0,0,1.1253553312841,0.222617410045812,0,0.211125408127993,0.19924798825107,0.276283915531148,0,0,0,0,0.0898683511473268,0.179021174675609,0,0,0,0,0,0.0927680981618513,0,0,0,0,0,0,0,0,0,0,0,0.723578631752448,0,0.110579259931225,0,0.219385397153973,0,0,0.153900517007594,1.02547850262301,0,0,0,0,0,1.06606955203727,0,0,0,0,0,0,0,0.158936578980379,0,0.326465616318295,0,0,0,0.176915129006678,0,0,0,0,0.134802265961354,0,0.234264445725339,0,0,0,0,0,0,0.695052375913368,0,0,0,0,0,1.19472429772959,0.569219092059585,0,0.173559738335131,0.0979923974143777,0,0.698906672968121,0.171986032471617,0.19351266257817,0,0,0.193978032976839,0,0,0,0.794858446811959,0.0633107959558787,0.782205530939212,0.160317640503067,0.213452994739353,0,0,0,0,0.288109595976299,0,0,0,0.104602846312333,0,0,0,0.684526894459965,0,0,0,0.558564802544508,0.458320848023367,36.6115242534175,0,0.429226048136571,0.223171457441873,0.0671834724867263,0.720599767084807,0,0,0.0824158583811665,0.0674035438541849,0,0,0,0.272406812223151,0,0.137539436597234,0,0,0,0.182248669974074,0,1.97014268247995,0.104909176269996,0,0.179287339332845,0,2.85878130549347,1.32418394073086,0,0,0.864221491201268,0,0,0,0,0.113312091520126,1.17241786942466,0,0.904980694530854,0.52893040697076,0,0,1.06787412567695,0,0,0,0,0,0,1.08803560673895,0.5013797880454,1.22538230705385,0.327872630709804,0,0,0,0.1251909307065,0,0.776503360757966,0.124192805882767,0,0.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| ||
|short_description=p18@SOD2 | |||
}} | }} |
Latest revision as of 14:09, 16 September 2015
Short description: | p18@SOD2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_18_at_SOD2_5end |
Coexpression cluster: | C954_heart_CD14_Neutrophils_Eosinophils_Lymphatic_renal_Monocytederived |
Association with transcript: | -178bp_to_uc003qsf.3_5end |
EntrezGene: | SOD2 |
HGNC: | 11180 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 2.32e-45 | 42 |
CD14-positive, CD16-negative classical monocyte | 2.32e-45 | 42 |
defensive cell | 2.88e-44 | 48 |
phagocyte | 2.88e-44 | 48 |
monopoietic cell | 1.83e-33 | 59 |
monocyte | 1.83e-33 | 59 |
monoblast | 1.83e-33 | 59 |
promonocyte | 1.83e-33 | 59 |
macrophage dendritic cell progenitor | 4.48e-32 | 61 |
myeloid leukocyte | 1.11e-31 | 72 |
myeloid lineage restricted progenitor cell | 5.74e-29 | 66 |
granulocyte monocyte progenitor cell | 2.11e-28 | 67 |
myeloid cell | 6.91e-18 | 108 |
common myeloid progenitor | 6.91e-18 | 108 |
nongranular leukocyte | 6.61e-13 | 115 |
leukocyte | 2.70e-12 | 136 |
hematopoietic lineage restricted progenitor cell | 5.06e-12 | 120 |
multi fate stem cell | 3.25e-09 | 427 |
hematopoietic oligopotent progenitor cell | 5.01e-09 | 161 |
hematopoietic multipotent progenitor cell | 5.01e-09 | 161 |
stem cell | 6.07e-09 | 441 |
somatic stem cell | 7.22e-09 | 433 |
hematopoietic stem cell | 2.67e-08 | 168 |
smooth muscle cell of the subclavian artery | 1.20e-07 | 5 |
hematopoietic cell | 1.84e-07 | 177 |
mesenchymal cell | 2.05e-07 | 354 |
connective tissue cell | 5.03e-07 | 361 |
Ontology term | p-value | n |
---|---|---|
hemolymphoid system | 4.88e-28 | 108 |
hematopoietic system | 1.04e-26 | 98 |
blood island | 1.04e-26 | 98 |
bone marrow | 9.17e-26 | 76 |
immune system | 4.57e-24 | 93 |
bone element | 3.32e-23 | 82 |
lateral plate mesoderm | 1.56e-21 | 203 |
skeletal element | 2.49e-20 | 90 |
skeletal system | 3.28e-20 | 100 |
musculoskeletal system | 2.22e-18 | 167 |
mesoderm | 1.88e-14 | 315 |
mesoderm-derived structure | 1.88e-14 | 315 |
presumptive mesoderm | 1.88e-14 | 315 |
cardiac chamber | 3.02e-08 | 3 |
thoracic segment blood vessel | 1.20e-07 | 5 |
subclavian artery | 1.20e-07 | 5 |