FFCP PHASE1:Hg19::chr10:11865347..11865411,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr10:11865347..11865411,+
|short_description=p1@C10orf47
|description=CAGE_peak_1_at_C10orf47_5end
|association_with_transcript=0bp_to_ENST00000277570,ENST0000...") |
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(11 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=254427 | |EntrezGene=254427 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=23728 | |HGNC=23728 | ||
|UniProt=Q86WR7, | |TSSclassifier=strong | ||
|UniProt=Q86WR7,A6NDS2 | |||
|association_with_transcript=0bp_to_ENST00000277570,ENST00000379202,ENST00000379208,NM_153256,uc001ikx.2_5end | |||
|cluster_id=chr10:11865347..11865411,+ | |||
|description=CAGE_peak_1_at_C10orf47_5end | |||
|id=chr10:11865347..11865411,+ | |||
|ontology_enrichment_celltype=CL:0000066!2.51e-47!254;CL:0000223!1.82e-17!59;CL:0002076!3.04e-16!43;CL:0000076!5.48e-12!62;CL:0002321!7.10e-10!248;CL:0000220!7.61e-10!246;CL:0002368!1.59e-08!13;CL:0000063!1.41e-07!578;CL:1000497!3.04e-07!18;CL:0002518!3.04e-07!18;CL:1000449!4.50e-07!16 | |||
|ontology_enrichment_celltype_v019=CL:0002076;2.72e-12;42!CL:0002368;1.03e-08;13!CL:1000497;4.31e-08;17!CL:0002518;4.31e-08;17!CL:1000449;6.04e-08;15!CL:1000507;1.91e-07;10!CL:1000494;1.91e-07;10 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,4.82e-49,253;CL:0000223,6.04e-18,58;CL:0002076,8.37e-17,42;CL:0000076,3.06e-12,63;CL:0002321,1.02e-09,250;CL:0002368,1.19e-08,13;CL:1000497,6.20e-08,17;CL:0002518,6.20e-08,17;CL:1000449,8.27e-08,15;CL:1000507,2.12e-07,10;CL:1000494,2.12e-07,10;CL:0002251,7.70e-07,20 | |||
|ontology_enrichment_development_v019=CL:0000223;7.35e-10;58 | |||
|ontology_enrichment_disease=DOID:305!1.05e-12!106;DOID:0050687!1.09e-10!143;DOID:299!5.60e-08!25;DOID:162!2.16e-07!235;DOID:1749!6.98e-07!14 | |||
|ontology_enrichment_disease_v019=DOID:299;5.48e-08;25!DOID:1749;6.20e-07;14 | |||
|ontology_enrichment_disease_v019_2=DOID:305,3.28e-13,106;DOID:0050687,2.66e-11,143;DOID:162,2.38e-08,235;DOID:299,5.92e-08,25;DOID:14566,1.75e-07,239;DOID:1749,5.57e-07,14 | |||
|ontology_enrichment_uberon=UBERON:0004119!1.20e-20!169;UBERON:0000925!1.20e-20!169;UBERON:0006595!1.20e-20!169;UBERON:0001007!1.91e-15!155;UBERON:0001555!1.91e-15!155;UBERON:0007026!1.91e-15!155;UBERON:0000077!2.87e-15!130;UBERON:0004921!1.09e-14!129;UBERON:0004185!1.09e-14!129;UBERON:0005177!6.18e-14!107;UBERON:0001041!4.98e-13!98;UBERON:0005911!5.30e-13!82;UBERON:0000466!1.28e-12!126;UBERON:0009569!1.58e-12!113;UBERON:0003104!1.37e-10!238;UBERON:0009142!1.37e-10!238;UBERON:0001008!1.20e-09!45;UBERON:0006554!1.60e-09!44;UBERON:0000464!6.94e-09!104;UBERON:0001004!1.20e-08!72;UBERON:0000065!1.40e-08!53;UBERON:0005172!4.49e-08!55;UBERON:0005173!4.49e-08!55;UBERON:0000058!9.97e-08!26;UBERON:0002100!1.01e-07!216;UBERON:0008947!1.04e-07!38;UBERON:0003258!1.04e-07!38;UBERON:0002417!1.36e-07!61;UBERON:0000916!1.36e-07!61;UBERON:0003929!1.57e-07!54;UBERON:0001048!3.26e-07!168;UBERON:0003064!3.54e-07!37;UBERON:0004211!4.50e-07!16;UBERON:0001285!4.50e-07!16;UBERON:0007684!4.50e-07!16;UBERON:0003220!4.50e-07!16;UBERON:0004208!4.50e-07!16;UBERON:0005178!8.11e-07!34;UBERON:0002224!8.11e-07!34 | |||
|ontology_enrichment_uberon_v019=UBERON:0006554;1.83e-10;30!UBERON:0001008;1.83e-10;30!UBERON:0006555;6.04e-08;15!UBERON:0004819;6.04e-08;15!UBERON:0001285;6.04e-08;15!UBERON:0007684;6.04e-08;15!UBERON:0002113;1.01e-07;24!UBERON:0011143;1.01e-07;24!UBERON:0000490;1.04e-07;33!UBERON:0000065;1.78e-07;44!UBERON:0004211;1.91e-07;10!UBERON:0009773;1.91e-07;10!UBERON:0001231;1.91e-07;10!UBERON:0004810;1.91e-07;10!UBERON:0005911;2.27e-07;36!UBERON:0000489;8.09e-07;29 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004119,1.27e-20,160;UBERON:0000925,1.27e-20,160;UBERON:0006595,1.27e-20,160;UBERON:0001007,1.56e-15,145;UBERON:0001555,1.56e-15,145;UBERON:0007026,1.56e-15,145;UBERON:0005177,2.92e-15,101;UBERON:0004921,2.08e-14,118;UBERON:0005911,1.02e-13,82;UBERON:0009569,3.45e-13,112;UBERON:0001041,5.01e-13,87;UBERON:0001008,1.43e-11,48;UBERON:0006554,1.91e-11,47;UBERON:0001004,3.97e-09,74;UBERON:0000065,1.04e-08,54;UBERON:0005172,1.65e-08,54;UBERON:0005173,1.65e-08,54;UBERON:0008947,3.73e-08,38;UBERON:0003258,3.73e-08,38;UBERON:0002417,5.52e-08,60;UBERON:0000916,5.52e-08,60;UBERON:0002100,6.97e-08,199;UBERON:0003929,8.27e-08,54;UBERON:0004211,8.27e-08,15;UBERON:0009773,8.27e-08,15;UBERON:0001231,8.27e-08,15;UBERON:0001285,8.27e-08,15;UBERON:0007684,8.27e-08,15;UBERON:0004208,8.27e-08,15;UBERON:0004810,2.12e-07,10;UBERON:0006555,3.82e-07,16;UBERON:0004819,3.82e-07,16;UBERON:0005178,4.89e-07,34;UBERON:0002224,4.89e-07,34 | |||
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| ||
|short_description=p1@C10orf47 | |||
}} | }} |
Latest revision as of 14:50, 16 September 2015
Short description: | p1@C10orf47 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_C10orf47_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000277570, ENST00000379202, ENST00000379208, NM_153256, uc001ikx.2_5end |
EntrezGene: | C10orf47 |
HGNC: | 23728 |
UniProt: | Q86WR7A6NDS2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 4.82e-49 | 253 |
endodermal cell | 6.04e-18 | 58 |
endo-epithelial cell | 8.37e-17 | 42 |
squamous epithelial cell | 3.06e-12 | 63 |
embryonic cell | 1.02e-09 | 250 |
respiratory epithelial cell | 1.19e-08 | 13 |
kidney cell | 6.20e-08 | 17 |
kidney epithelial cell | 6.20e-08 | 17 |
epithelial cell of nephron | 8.27e-08 | 15 |
kidney tubule cell | 2.12e-07 | 10 |
nephron tubule epithelial cell | 2.12e-07 | 10 |
epithelial cell of alimentary canal | 7.70e-07 | 20 |
Ontology term | p-value | n |
---|---|---|
endoderm-derived structure | 1.27e-20 | 160 |
endoderm | 1.27e-20 | 160 |
presumptive endoderm | 1.27e-20 | 160 |
digestive system | 1.56e-15 | 145 |
digestive tract | 1.56e-15 | 145 |
primitive gut | 1.56e-15 | 145 |
trunk region element | 2.92e-15 | 101 |
subdivision of digestive tract | 2.08e-14 | 118 |
endo-epithelium | 1.02e-13 | 82 |
subdivision of trunk | 3.45e-13 | 112 |
foregut | 5.01e-13 | 87 |
renal system | 1.43e-11 | 48 |
urinary system structure | 1.91e-11 | 47 |
respiratory system | 3.97e-09 | 74 |
respiratory tract | 1.04e-08 | 54 |
abdomen element | 1.65e-08 | 54 |
abdominal segment element | 1.65e-08 | 54 |
respiratory primordium | 3.73e-08 | 38 |
endoderm of foregut | 3.73e-08 | 38 |
abdominal segment of trunk | 5.52e-08 | 60 |
abdomen | 5.52e-08 | 60 |
trunk | 6.97e-08 | 199 |
gut epithelium | 8.27e-08 | 54 |
nephron epithelium | 8.27e-08 | 15 |
renal tubule | 8.27e-08 | 15 |
nephron tubule | 8.27e-08 | 15 |
nephron | 8.27e-08 | 15 |
uriniferous tubule | 8.27e-08 | 15 |
nephrogenic mesenchyme | 8.27e-08 | 15 |
nephron tubule epithelium | 2.12e-07 | 10 |
excretory tube | 3.82e-07 | 16 |
kidney epithelium | 3.82e-07 | 16 |
thoracic cavity element | 4.89e-07 | 34 |
thoracic cavity | 4.89e-07 | 34 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 3.28e-13 | 106 |
cell type cancer | 2.66e-11 | 143 |
cancer | 2.38e-08 | 235 |
adenocarcinoma | 5.92e-08 | 25 |
disease of cellular proliferation | 1.75e-07 | 239 |
squamous cell carcinoma | 5.57e-07 | 14 |