FFCP PHASE1:Hg19::chr16:4421841..4421855,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr16:4421841..4421855,+
|short_description=p1@VASN
|description=CAGE_peak_1_at_VASN_5end
|association_with_transcript=0bp_to_ENST00000304735,NM_138440,uc002cwj...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=114990 | |EntrezGene=114990 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=18517 | |HGNC=18517 | ||
|TSSclassifier=strong | |||
|UniProt=Q6EMK4 | |UniProt=Q6EMK4 | ||
|association_with_transcript=0bp_to_ENST00000304735,NM_138440,uc002cwj.1_5end | |||
|cluster_id=chr16:4421841..4421855,+ | |||
|coexpression_cluster_id=C589 | |||
|description=CAGE_peak_1_at_VASN_5end | |||
|id=chr16:4421841..4421855,+ | |||
|ontology_enrichment_celltype=CL:0000055!3.30e-38!180;CL:0000057!1.17e-24!75;CL:0000680!3.39e-14!57;CL:0000056!3.39e-14!57;CL:0000355!3.39e-14!57;CL:0000183!4.15e-14!59;CL:0000187!1.90e-13!54;CL:0000393!2.17e-11!60;CL:0000211!2.17e-11!60;CL:0002620!6.99e-11!23;CL:0000192!8.55e-11!42;CL:0000514!8.55e-11!42;CL:0002334!1.44e-07!12;CL:0000359!4.50e-07!32;CL:0000499!8.06e-07!27 | |||
|ontology_enrichment_celltype_v019=CL:0002620;6.04e-11;23!CL:0000057;1.03e-09;73!CL:0000134;2.77e-09;55!CL:0002320;4.80e-09;188!CL:0000192;1.33e-08;43!CL:0000187;3.51e-08;55!CL:0000723;6.14e-08;61!CL:0000048;1.01e-07;58!CL:0002334;1.31e-07;12!CL:0000499;3.48e-07;28!CL:0000349;4.39e-07;19!CL:0000393;8.33e-07;61!CL:0000211;8.33e-07;61 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,5.51e-25,76;CL:0000680,9.48e-15,58;CL:0000056,9.48e-15,58;CL:0000355,9.48e-15,58;CL:0000187,5.40e-14,55;CL:0000393,6.91e-12,61;CL:0000211,6.91e-12,61;CL:0000192,2.57e-11,43;CL:0000514,2.57e-11,43;CL:0002620,6.09e-11,23;CL:0002334,1.32e-07,12;CL:0000499,3.38e-07,28;CL:0000359,4.14e-07,32;CL:0000349,4.51e-07,19 | |||
|ontology_enrichment_development_v019=CL:0000514;1.33e-08;43!CL:0000355;3.54e-08;58 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000475!9.22e-23!365;UBERON:0005256!2.02e-20!143;UBERON:0002100!3.18e-18!216;UBERON:0000914!1.42e-17!83;UBERON:0002329!1.42e-17!83;UBERON:0003077!1.42e-17!83;UBERON:0003059!1.42e-17!83;UBERON:0007282!1.42e-17!83;UBERON:0009618!1.42e-17!83;UBERON:0007285!1.42e-17!83;UBERON:0000481!2.03e-17!347;UBERON:0004290!1.77e-16!70;UBERON:0000486!1.37e-14!82;UBERON:0000468!6.51e-14!659;UBERON:0003104!8.73e-14!238;UBERON:0009142!8.73e-14!238;UBERON:0001134!9.22e-14!61;UBERON:0002036!9.22e-14!61;UBERON:0003082!9.22e-14!61;UBERON:0002385!1.79e-13!63;UBERON:0001015!1.79e-13!63;UBERON:0000383!1.79e-13!63;UBERON:0000119!7.59e-10!312;UBERON:0003102!1.02e-09!95;UBERON:0000483!1.14e-09!309;UBERON:0000467!2.73e-09!625;UBERON:0000480!4.73e-09!626;UBERON:0004923!6.30e-09!57;UBERON:0000062!3.74e-08!511;UBERON:0002199!3.79e-08!45;UBERON:0002416!3.79e-08!45;UBERON:0009569!5.01e-07!113;UBERON:0000922!7.31e-07!612;UBERON:0002050!8.72e-07!605;UBERON:0005423!8.72e-07!605;UBERON:0002097!9.90e-07!40 | |||
|ontology_enrichment_uberon_v019=UBERON:0002384;5.80e-09;198 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003104,1.72e-21,160;UBERON:0009142,1.72e-21,160;UBERON:0005256,1.37e-18,122;UBERON:0007524,2.42e-17,73;UBERON:0002329,4.75e-17,71;UBERON:0003059,4.75e-17,71;UBERON:0007282,4.75e-17,71;UBERON:0004290,4.75e-17,71;UBERON:0009618,4.75e-17,71;UBERON:0003077,8.88e-17,72;UBERON:0007285,8.88e-17,72;UBERON:0007503,3.94e-16,78;UBERON:0002100,7.04e-16,199;UBERON:0000486,4.10e-15,83;UBERON:0001134,2.67e-14,62;UBERON:0002036,2.67e-14,62;UBERON:0003082,2.67e-14,62;UBERON:0002385,5.28e-14,64;UBERON:0001015,5.28e-14,64;UBERON:0000383,5.28e-14,64;UBERON:0000119,3.61e-09,309;UBERON:0000483,5.35e-09,306;UBERON:0004923,6.07e-09,66;UBERON:0003102,6.89e-09,99;UBERON:0002199,2.15e-08,46;UBERON:0002416,2.15e-08,46;UBERON:0000490,2.16e-08,148;UBERON:0000479,3.78e-07,773;UBERON:0002097,5.80e-07,41 | |||
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| ||
|short_description=p1@VASN | |||
}} | }} |
Latest revision as of 16:16, 16 September 2015
Short description: | p1@VASN |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_VASN_5end |
Coexpression cluster: | C589_Mesenchymal_Smooth_Fibroblast_Osteoblast_tenocyte_Preadipocyte_Synoviocyte |
Association with transcript: | 0bp_to_ENST00000304735, NM_138440, uc002cwj.1_5end |
EntrezGene: | VASN |
HGNC: | 18517 |
UniProt: | Q6EMK4 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 5.51e-25 | 76 |
muscle precursor cell | 9.48e-15 | 58 |
myoblast | 9.48e-15 | 58 |
multi-potent skeletal muscle stem cell | 9.48e-15 | 58 |
muscle cell | 5.40e-14 | 55 |
electrically responsive cell | 6.91e-12 | 61 |
electrically active cell | 6.91e-12 | 61 |
smooth muscle cell | 2.57e-11 | 43 |
smooth muscle myoblast | 2.57e-11 | 43 |
skin fibroblast | 6.09e-11 | 23 |
preadipocyte | 1.32e-07 | 12 |
stromal cell | 3.38e-07 | 28 |
vascular associated smooth muscle cell | 4.14e-07 | 32 |
extraembryonic cell | 4.51e-07 | 19 |
Ontology term | p-value | n |
---|---|---|
mesenchyme | 1.72e-21 | 160 |
entire embryonic mesenchyme | 1.72e-21 | 160 |
trunk mesenchyme | 1.37e-18 | 122 |
dense mesenchyme tissue | 2.42e-17 | 73 |
somite | 4.75e-17 | 71 |
presomitic mesoderm | 4.75e-17 | 71 |
presumptive segmental plate | 4.75e-17 | 71 |
dermomyotome | 4.75e-17 | 71 |
trunk paraxial mesoderm | 4.75e-17 | 71 |
paraxial mesoderm | 8.88e-17 | 72 |
presumptive paraxial mesoderm | 8.88e-17 | 72 |
epithelial vesicle | 3.94e-16 | 78 |
trunk | 7.04e-16 | 199 |
multilaminar epithelium | 4.10e-15 | 83 |
skeletal muscle tissue | 2.67e-14 | 62 |
striated muscle tissue | 2.67e-14 | 62 |
myotome | 2.67e-14 | 62 |
muscle tissue | 5.28e-14 | 64 |
musculature | 5.28e-14 | 64 |
musculature of body | 5.28e-14 | 64 |
cell layer | 3.61e-09 | 309 |
epithelium | 5.35e-09 | 306 |
organ component layer | 6.07e-09 | 66 |
surface structure | 6.89e-09 | 99 |
integument | 2.15e-08 | 46 |
integumental system | 2.15e-08 | 46 |
unilaminar epithelium | 2.16e-08 | 148 |
tissue | 3.78e-07 | 773 |
skin of body | 5.80e-07 | 41 |