FFCP PHASE1:Hg19::chr7:139876812..139876860,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=80853 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=22224 | |||
|TSSclassifier=strong | |||
|UniProt=Q6ZMT4 | |||
|association_with_transcript=0bp_to_ENST00000397560_5end | |||
|cluster_id=chr7:139876812..139876860,- | |||
|coexpression_cluster_id=C4658 | |||
|description=CAGE_peak_3_at_JHDM1D_5end | |||
|id=chr7:139876812..139876860,- | |||
|ontology_enrichment_celltype=CL:0000738!1.04e-28!140;CL:0002031!8.27e-24!124;CL:0002087!9.48e-23!119;CL:0000766!7.75e-22!76;CL:0000037!6.83e-21!172;CL:0000566!6.83e-21!172;CL:0002032!1.72e-20!165;CL:0000837!1.72e-20!165;CL:0000988!2.29e-19!182;CL:0002057!7.90e-19!42;CL:0000839!1.32e-18!70;CL:0002009!2.39e-18!65;CL:0000557!4.54e-18!71;CL:0002194!2.21e-17!63;CL:0000576!2.21e-17!63;CL:0000040!2.21e-17!63;CL:0000559!2.21e-17!63;CL:0000860!2.52e-17!45;CL:0000763!4.40e-15!112;CL:0000049!4.40e-15!112;CL:0000791!6.20e-07!18;CL:0000789!6.20e-07!18;CL:0002420!6.20e-07!18;CL:0002419!6.20e-07!18;CL:0000790!6.20e-07!18 | |||
|ontology_enrichment_celltype_v019=CL:0000860;1.44e-14;33!CL:0002057;1.44e-14;33!CL:0000473;1.01e-13;39!CL:0000234;1.01e-13;39!CL:0000576;4.99e-12;48!CL:0000766;7.40e-11;69!CL:0002087;5.33e-08;104!CL:0000738;8.44e-08;136!CL:0000791;4.43e-07;18!CL:0000789;4.43e-07;18!CL:0002419;4.43e-07;18 | |||
|ontology_enrichment_celltype_v019_2=CL:0000738,5.56e-32,136;CL:0002031,1.31e-26,120;CL:0002087,1.67e-25,115;CL:0000766,1.31e-24,72;CL:0000037,8.31e-24,168;CL:0002032,2.56e-23,161;CL:0000837,2.56e-23,161;CL:0000988,1.43e-22,177;CL:0000839,3.86e-21,66;CL:0002009,5.69e-21,61;CL:0000473,8.18e-21,48;CL:0000234,8.18e-21,48;CL:0000557,1.62e-20,67;CL:0002194,6.18e-20,59;CL:0000576,6.18e-20,59;CL:0000040,6.18e-20,59;CL:0000559,6.18e-20,59;CL:0000860,1.93e-19,42;CL:0002057,1.93e-19,42;CL:0000763,2.36e-17,108;CL:0000049,2.36e-17,108;CL:0000791,3.99e-07,18;CL:0000789,3.99e-07,18;CL:0002420,3.99e-07,18;CL:0002419,3.99e-07,18;CL:0000790,3.99e-07,18 | |||
|ontology_enrichment_development_v019=CL:0002057;1.94e-14;42!CL:0000790;4.43e-07;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!2.85e-22!102;UBERON:0003061!2.85e-22!102;UBERON:0007023!8.32e-22!115;UBERON:0002193!8.11e-21!112;UBERON:0002371!2.26e-13!80;UBERON:0001474!7.61e-13!86;UBERON:0002405!2.92e-12!115;UBERON:0000178!4.35e-10!15;UBERON:0000179!4.35e-10!15;UBERON:0000463!4.35e-10!15;UBERON:0004765!6.61e-08!101;UBERON:0001434!6.61e-08!101 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;1.90e-10;15!UBERON:0000179;1.90e-10;15!UBERON:0000463;1.90e-10;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,3.84e-25,98;UBERON:0003061,3.84e-25,98;UBERON:0002193,2.23e-23,108;UBERON:0007023,4.21e-22,114;UBERON:0002405,1.03e-15,93;UBERON:0002371,2.29e-15,76;UBERON:0001474,1.07e-14,82;UBERON:0004765,7.55e-11,90;UBERON:0000178,2.17e-10,15;UBERON:0000179,2.17e-10,15;UBERON:0000463,2.17e-10,15;UBERON:0001434,4.15e-08,100 | |||
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| |||
|short_description=p3@JHDM1D | |||
}} |
Latest revision as of 17:27, 16 September 2015
Short description: | p3@JHDM1D |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_JHDM1D_5end |
Coexpression cluster: | C4658_Neutrophils_small_Eosinophils_CD14_neuroectodermal_Whole_Peripheral |
Association with transcript: | 0bp_to_ENST00000397560_5end |
EntrezGene: | JHDM1D |
HGNC: | 22224 |
UniProt: | Q6ZMT4 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
leukocyte | 5.56e-32 | 136 |
hematopoietic lineage restricted progenitor cell | 1.31e-26 | 120 |
nongranular leukocyte | 1.67e-25 | 115 |
myeloid leukocyte | 1.31e-24 | 72 |
hematopoietic stem cell | 8.31e-24 | 168 |
hematopoietic oligopotent progenitor cell | 2.56e-23 | 161 |
hematopoietic multipotent progenitor cell | 2.56e-23 | 161 |
hematopoietic cell | 1.43e-22 | 177 |
myeloid lineage restricted progenitor cell | 3.86e-21 | 66 |
macrophage dendritic cell progenitor | 5.69e-21 | 61 |
defensive cell | 8.18e-21 | 48 |
phagocyte | 8.18e-21 | 48 |
granulocyte monocyte progenitor cell | 1.62e-20 | 67 |
monopoietic cell | 6.18e-20 | 59 |
monocyte | 6.18e-20 | 59 |
monoblast | 6.18e-20 | 59 |
promonocyte | 6.18e-20 | 59 |
classical monocyte | 1.93e-19 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.93e-19 | 42 |
myeloid cell | 2.36e-17 | 108 |
common myeloid progenitor | 2.36e-17 | 108 |
mature alpha-beta T cell | 3.99e-07 | 18 |
alpha-beta T cell | 3.99e-07 | 18 |
immature T cell | 3.99e-07 | 18 |
mature T cell | 3.99e-07 | 18 |
immature alpha-beta T cell | 3.99e-07 | 18 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 3.84e-25 | 98 |
blood island | 3.84e-25 | 98 |
hemolymphoid system | 2.23e-23 | 108 |
adult organism | 4.21e-22 | 114 |
immune system | 1.03e-15 | 93 |
bone marrow | 2.29e-15 | 76 |
bone element | 1.07e-14 | 82 |
skeletal element | 7.55e-11 | 90 |
blood | 2.17e-10 | 15 |
haemolymphatic fluid | 2.17e-10 | 15 |
organism substance | 2.17e-10 | 15 |
skeletal system | 4.15e-08 | 100 |