FFCP PHASE1:Hg19::chr19:1882553..1882574,-: Difference between revisions
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(Created page with "{{FFCP
|id=chr19:1882553..1882574,-
|short_description=p3@FAM108A1
|description=CAGE_peak_3_at_FAM108A1_5end
|association_with_transcript=154bp_to_AK024419_5end
|EntrezGe...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=81926 | |EntrezGene=81926 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=28756 | |HGNC=28756 | ||
|TSSclassifier=strong | |||
|UniProt=Q96GS6 | |UniProt=Q96GS6 | ||
|association_with_transcript=154bp_to_AK024419_5end | |||
|cluster_id=chr19:1882553..1882574,- | |||
|coexpression_cluster_id=C23 | |||
|description=CAGE_peak_3_at_FAM108A1_5end | |||
|id=chr19:1882553..1882574,- | |||
|ontology_enrichment_celltype=CL:0000084!4.31e-34!25;CL:0000827!4.31e-34!25;CL:0000791!6.11e-34!18;CL:0000789!6.11e-34!18;CL:0002420!6.11e-34!18;CL:0002419!6.11e-34!18;CL:0000790!6.11e-34!18;CL:0000625!1.15e-21!11;CL:0000738!1.05e-20!140;CL:0000838!3.43e-19!52;CL:0000542!1.13e-18!53;CL:0000051!1.13e-18!53;CL:0000037!1.05e-16!172;CL:0000566!1.05e-16!172;CL:0002087!2.89e-16!119;CL:0000988!5.62e-15!182;CL:0002032!2.03e-13!165;CL:0000837!2.03e-13!165;CL:0000624!1.88e-12!6;CL:0002031!3.60e-12!124;CL:0000623!2.20e-07!3;CL:0000825!2.20e-07!3;CL:0000898!3.63e-07!3;CL:0000842!7.19e-07!3 | |||
|ontology_enrichment_celltype_v019=CL:0000791;3.10e-59;18!CL:0000789;3.10e-59;18!CL:0002419;3.10e-59;18!CL:0000084;2.01e-46;25!CL:0000625;2.09e-41;11!CL:0000624;4.67e-23;6!CL:0000542;8.34e-15;53!CL:0000623;4.74e-13;3!CL:0000898;1.31e-12;3!CL:0000226;4.48e-12;3!CL:0000842;4.48e-12;3!CL:0000815;4.91e-09;2!CL:0000792;4.91e-09;2!CL:0002677;4.91e-09;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000791,3.41e-59,18;CL:0000789,3.41e-59,18;CL:0002420,3.41e-59,18;CL:0002419,3.41e-59,18;CL:0000790,3.41e-59,18;CL:0000084,2.51e-46,25;CL:0000827,2.51e-46,25;CL:0000625,2.35e-41,11;CL:0000838,4.28e-28,52;CL:0000542,1.84e-27,53;CL:0000051,1.84e-27,53;CL:0000624,4.59e-23,6;CL:0000738,7.03e-18,136;CL:0002087,1.51e-17,115;CL:0000037,4.08e-13,168;CL:0000623,4.65e-13,3;CL:0000825,4.65e-13,3;CL:0000898,1.24e-12,3;CL:0002031,1.90e-12,120;CL:0000988,4.32e-12,177;CL:0000226,4.74e-12,3;CL:0000842,4.74e-12,3;CL:0002032,1.15e-10,161;CL:0000837,1.15e-10,161;CL:0000815,5.01e-09,2;CL:0000792,5.01e-09,2;CL:0002677,5.01e-09,2 | |||
|ontology_enrichment_development_v019=CL:0000790;3.10e-59;18!CL:0000051;8.34e-15;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004177!9.75e-09!7;UBERON:0002370!8.79e-08!4;UBERON:0005058!8.79e-08!4;UBERON:0009113!8.79e-08!4;UBERON:0003295!8.79e-08!4;UBERON:0005562!8.79e-08!4;UBERON:0000178!4.00e-07!15;UBERON:0000179!4.00e-07!15;UBERON:0000463!4.00e-07!15 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;4.04e-11;15!UBERON:0000179;4.04e-11;15!UBERON:0000463;4.04e-11;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,4.08e-11,15;UBERON:0000179,4.08e-11,15;UBERON:0000463,4.08e-11,15 | |||
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| ||
|short_description=p3@FAM108A1 | |||
}} | }} |
Latest revision as of 17:32, 16 September 2015
Short description: | p3@FAM108A1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_FAM108A1_5end |
Coexpression cluster: | C23_CD4_CD8_Natural_Peripheral_Basophils_CD19_CD14 |
Association with transcript: | 154bp_to_AK024419_5end |
EntrezGene: | FAM108A1 |
HGNC: | 28756 |
UniProt: | Q96GS6 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mature alpha-beta T cell | 3.41e-59 | 18 |
alpha-beta T cell | 3.41e-59 | 18 |
immature T cell | 3.41e-59 | 18 |
mature T cell | 3.41e-59 | 18 |
immature alpha-beta T cell | 3.41e-59 | 18 |
T cell | 2.51e-46 | 25 |
pro-T cell | 2.51e-46 | 25 |
CD8-positive, alpha-beta T cell | 2.35e-41 | 11 |
lymphoid lineage restricted progenitor cell | 4.28e-28 | 52 |
lymphocyte | 1.84e-27 | 53 |
common lymphoid progenitor | 1.84e-27 | 53 |
CD4-positive, alpha-beta T cell | 4.59e-23 | 6 |
leukocyte | 7.03e-18 | 136 |
nongranular leukocyte | 1.51e-17 | 115 |
hematopoietic stem cell | 4.08e-13 | 168 |
natural killer cell | 4.65e-13 | 3 |
pro-NK cell | 4.65e-13 | 3 |
naive T cell | 1.24e-12 | 3 |
hematopoietic lineage restricted progenitor cell | 1.90e-12 | 120 |
hematopoietic cell | 4.32e-12 | 177 |
single nucleate cell | 4.74e-12 | 3 |
mononuclear cell | 4.74e-12 | 3 |
hematopoietic oligopotent progenitor cell | 1.15e-10 | 161 |
hematopoietic multipotent progenitor cell | 1.15e-10 | 161 |
regulatory T cell | 5.01e-09 | 2 |
CD4-positive, CD25-positive, alpha-beta regulatory T cell | 5.01e-09 | 2 |
naive regulatory T cell | 5.01e-09 | 2 |
Ontology term | p-value | n |
---|---|---|
blood | 4.08e-11 | 15 |
haemolymphatic fluid | 4.08e-11 | 15 |
organism substance | 4.08e-11 | 15 |