FFCP PHASE1:Hg19::chr4:177713756..177713777,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=7424 | |EntrezGene=7424 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=12682 | |HGNC=12682 | ||
|TSSclassifier=strong | |||
|UniProt=P49767 | |UniProt=P49767 | ||
|association_with_transcript=103bp_to_ENST00000280193_5end | |association_with_transcript=103bp_to_ENST00000280193_5end | ||
|cluster_id=chr4:177713756..177713777,- | |||
|coexpression_cluster_id=C2788 | |coexpression_cluster_id=C2788 | ||
|description=CAGE_peak_4_at_VEGFC_5end | |description=CAGE_peak_4_at_VEGFC_5end | ||
|id=chr4:177713756..177713777,- | |id=chr4:177713756..177713777,- | ||
|ontology_enrichment_celltype=CL:0000055!1.84e-32!180;CL:0000057!4.10e-22!75;CL:0000680!5.36e-13!57;CL:0000056!5.36e-13!57;CL:0000355!5.36e-13!57;CL:0000192!9.80e-12!42;CL:0000514!9.80e-12!42;CL:0000187!2.96e-11!54;CL:0000183!3.52e-11!59;CL:0000359!4.96e-11!32;CL:0000222!2.06e-10!119;CL:0000220!8.12e-10!246;CL:0002620!1.10e-09!23;CL:0002321!2.16e-09!248;CL:0000393!2.49e-08!60;CL:0000211!2.49e-08!60;CL:0002334!3.57e-08!12;CL:0002371!3.66e-08!591;CL:0000548!2.30e-07!679;CL:0000004!2.30e-07!679;CL:0000255!2.30e-07!679;CL:0000144!3.81e-07!625;CL:0000012!6.63e-07!682 | |ontology_enrichment_celltype=CL:0000055!1.84e-32!180;CL:0000057!4.10e-22!75;CL:0000680!5.36e-13!57;CL:0000056!5.36e-13!57;CL:0000355!5.36e-13!57;CL:0000192!9.80e-12!42;CL:0000514!9.80e-12!42;CL:0000187!2.96e-11!54;CL:0000183!3.52e-11!59;CL:0000359!4.96e-11!32;CL:0000222!2.06e-10!119;CL:0000220!8.12e-10!246;CL:0002620!1.10e-09!23;CL:0002321!2.16e-09!248;CL:0000393!2.49e-08!60;CL:0000211!2.49e-08!60;CL:0002334!3.57e-08!12;CL:0002371!3.66e-08!591;CL:0000548!2.30e-07!679;CL:0000004!2.30e-07!679;CL:0000255!2.30e-07!679;CL:0000144!3.81e-07!625;CL:0000012!6.63e-07!682 | ||
|ontology_enrichment_celltype_v019=CL:0002620;1.28e-12;23!CL:0000359;8.46e-11;32!CL:0000057;2.84e-10;73!CL:0002334;3.72e-10;12!CL:0002320;3.59e-09;188!CL:0000192;7.09e-09;43!CL:0000134;7.91e-07;55 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,1.60e-26,76;CL:0002620,1.61e-12,23;CL:0000359,3.29e-11,32;CL:0000048,4.26e-11,427;CL:0000723,5.13e-11,433;CL:0000192,6.17e-11,43;CL:0000514,6.17e-11,43;CL:0000680,9.62e-11,58;CL:0000056,9.62e-11,58;CL:0000355,9.62e-11,58;CL:0002334,3.02e-10,12;CL:0000034,5.13e-10,441;CL:0000187,7.38e-09,55;CL:0000393,5.58e-07,61;CL:0000211,5.58e-07,61;CL:0002321,7.90e-07,250 | |||
|ontology_enrichment_development_v019=CL:0000514;7.09e-09;43!CL:0000355;4.28e-07;58 | |||
|ontology_enrichment_disease=DOID:2394!2.57e-08!14 | |ontology_enrichment_disease=DOID:2394!2.57e-08!14 | ||
|ontology_enrichment_disease_v019=DOID:2394;9.13e-11;14 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,8.94e-11,14 | |||
|ontology_enrichment_uberon=UBERON:0000914!5.71e-19!83;UBERON:0002329!5.71e-19!83;UBERON:0003077!5.71e-19!83;UBERON:0003059!5.71e-19!83;UBERON:0007282!5.71e-19!83;UBERON:0009618!5.71e-19!83;UBERON:0007285!5.71e-19!83;UBERON:0000486!1.24e-18!82;UBERON:0003102!1.11e-15!95;UBERON:0004290!4.62e-15!70;UBERON:0002100!6.00e-15!216;UBERON:0005256!1.98e-14!143;UBERON:0000475!2.31e-14!365;UBERON:0001134!1.08e-12!61;UBERON:0002036!1.08e-12!61;UBERON:0003082!1.08e-12!61;UBERON:0002385!1.44e-12!63;UBERON:0001015!1.44e-12!63;UBERON:0000383!1.44e-12!63;UBERON:0001637!1.66e-11!42;UBERON:0003509!1.66e-11!42;UBERON:0004572!1.66e-11!42;UBERON:0003104!2.84e-11!238;UBERON:0009142!2.84e-11!238;UBERON:0001981!2.63e-10!60;UBERON:0007500!2.63e-10!60;UBERON:0004537!2.63e-10!60;UBERON:0006965!2.63e-10!60;UBERON:0004872!4.02e-10!84;UBERON:0002199!4.62e-10!45;UBERON:0002416!4.62e-10!45;UBERON:0000490!6.37e-10!138;UBERON:0004573!1.39e-09!33;UBERON:0004571!1.39e-09!33;UBERON:0000055!2.51e-09!69;UBERON:0000481!4.71e-09!347;UBERON:0000468!1.35e-08!659;UBERON:0002097!1.69e-08!40;UBERON:0002049!8.57e-08!79;UBERON:0007798!8.57e-08!79;UBERON:0000483!3.25e-07!309;UBERON:0003914!3.45e-07!118;UBERON:0000119!6.19e-07!312;UBERON:0000467!6.73e-07!625;UBERON:0000480!9.37e-07!626 | |ontology_enrichment_uberon=UBERON:0000914!5.71e-19!83;UBERON:0002329!5.71e-19!83;UBERON:0003077!5.71e-19!83;UBERON:0003059!5.71e-19!83;UBERON:0007282!5.71e-19!83;UBERON:0009618!5.71e-19!83;UBERON:0007285!5.71e-19!83;UBERON:0000486!1.24e-18!82;UBERON:0003102!1.11e-15!95;UBERON:0004290!4.62e-15!70;UBERON:0002100!6.00e-15!216;UBERON:0005256!1.98e-14!143;UBERON:0000475!2.31e-14!365;UBERON:0001134!1.08e-12!61;UBERON:0002036!1.08e-12!61;UBERON:0003082!1.08e-12!61;UBERON:0002385!1.44e-12!63;UBERON:0001015!1.44e-12!63;UBERON:0000383!1.44e-12!63;UBERON:0001637!1.66e-11!42;UBERON:0003509!1.66e-11!42;UBERON:0004572!1.66e-11!42;UBERON:0003104!2.84e-11!238;UBERON:0009142!2.84e-11!238;UBERON:0001981!2.63e-10!60;UBERON:0007500!2.63e-10!60;UBERON:0004537!2.63e-10!60;UBERON:0006965!2.63e-10!60;UBERON:0004872!4.02e-10!84;UBERON:0002199!4.62e-10!45;UBERON:0002416!4.62e-10!45;UBERON:0000490!6.37e-10!138;UBERON:0004573!1.39e-09!33;UBERON:0004571!1.39e-09!33;UBERON:0000055!2.51e-09!69;UBERON:0000481!4.71e-09!347;UBERON:0000468!1.35e-08!659;UBERON:0002097!1.69e-08!40;UBERON:0002049!8.57e-08!79;UBERON:0007798!8.57e-08!79;UBERON:0000483!3.25e-07!309;UBERON:0003914!3.45e-07!118;UBERON:0000119!6.19e-07!312;UBERON:0000467!6.73e-07!625;UBERON:0000480!9.37e-07!626 | ||
|ontology_enrichment_uberon_v019=UBERON:0002097;1.13e-08;41!UBERON:0002199;3.70e-08;46!UBERON:0002416;3.70e-08;46!UBERON:0003102;7.16e-08;50!UBERON:0002384;1.64e-07;198!UBERON:0001434;3.22e-07;36!UBERON:0002204;8.37e-07;70 | |||
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| ||
|short_description=p4@VEGFC | |short_description=p4@VEGFC | ||
}} | }} |
Latest revision as of 22:36, 16 September 2015
Short description: | p4@VEGFC |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_VEGFC_5end |
Coexpression cluster: | C2788_Urothelial_Fibroblast_Small_Smooth_Mallassezderived_Myoblast_Gingival |
Association with transcript: | 103bp_to_ENST00000280193_5end |
EntrezGene: | VEGFC |
HGNC: | 12682 |
UniProt: | P49767 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 1.60e-26 | 76 |
skin fibroblast | 1.61e-12 | 23 |
vascular associated smooth muscle cell | 3.29e-11 | 32 |
multi fate stem cell | 4.26e-11 | 427 |
somatic stem cell | 5.13e-11 | 433 |
smooth muscle cell | 6.17e-11 | 43 |
smooth muscle myoblast | 6.17e-11 | 43 |
muscle precursor cell | 9.62e-11 | 58 |
myoblast | 9.62e-11 | 58 |
multi-potent skeletal muscle stem cell | 9.62e-11 | 58 |
preadipocyte | 3.02e-10 | 12 |
stem cell | 5.13e-10 | 441 |
muscle cell | 7.38e-09 | 55 |
electrically responsive cell | 5.58e-07 | 61 |
electrically active cell | 5.58e-07 | 61 |
embryonic cell | 7.90e-07 | 250 |
Ontology term | p-value | n |
---|---|---|
multilaminar epithelium | 4.57e-17 | 83 |
surface structure | 6.88e-16 | 99 |
epithelial vesicle | 2.62e-13 | 78 |
somite | 1.24e-12 | 71 |
presomitic mesoderm | 1.24e-12 | 71 |
presumptive segmental plate | 1.24e-12 | 71 |
dermomyotome | 1.24e-12 | 71 |
trunk paraxial mesoderm | 1.24e-12 | 71 |
integument | 2.44e-12 | 46 |
integumental system | 2.44e-12 | 46 |
paraxial mesoderm | 3.02e-12 | 72 |
presumptive paraxial mesoderm | 3.02e-12 | 72 |
dense mesenchyme tissue | 7.16e-12 | 73 |
skin of body | 8.66e-11 | 41 |
trunk mesenchyme | 4.53e-10 | 122 |
skeletal muscle tissue | 7.22e-10 | 62 |
striated muscle tissue | 7.22e-10 | 62 |
myotome | 7.22e-10 | 62 |
artery | 8.37e-10 | 42 |
arterial blood vessel | 8.37e-10 | 42 |
arterial system | 8.37e-10 | 42 |
muscle tissue | 3.51e-09 | 64 |
musculature | 3.51e-09 | 64 |
musculature of body | 3.51e-09 | 64 |
trunk | 7.56e-09 | 199 |
systemic artery | 1.02e-07 | 33 |
systemic arterial system | 1.02e-07 | 33 |
unilaminar epithelium | 2.57e-07 | 148 |
subdivision of skeletal system | 7.82e-07 | 16 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 8.94e-11 | 14 |