FFCP PHASE1:Hg19::chr2:32490713..32490729,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=58484 | |EntrezGene=58484 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=16412 | |HGNC=16412 | ||
|TSSclassifier=strong | |||
|UniProt=Q9NPP4 | |UniProt=Q9NPP4 | ||
|association_with_transcript=-24bp_to_NM_001199139_5end | |association_with_transcript=-24bp_to_NM_001199139_5end | ||
|cluster_id=chr2:32490713..32490729,- | |||
|coexpression_cluster_id=C2 | |coexpression_cluster_id=C2 | ||
|description=CAGE_peak_5_at_NLRC4_5end | |description=CAGE_peak_5_at_NLRC4_5end | ||
|id=chr2:32490713..32490729,- | |id=chr2:32490713..32490729,- | ||
|ontology_enrichment_celltype=CL:0002057!4.90e-91!42;CL:0000860!2.84e-84!45;CL:0000766!1.11e-76!76;CL:0002194!1.02e-69!63;CL:0000576!1.02e-69!63;CL:0000040!1.02e-69!63;CL:0000559!1.02e-69!63;CL:0002009!2.89e-67!65;CL:0000839!9.66e-62!70;CL:0000557!9.95e-61!71;CL:0000763!2.51e-48!112;CL:0000049!2.51e-48!112;CL:0000738!9.04e-44!140;CL:0002087!1.54e-39!119;CL:0000037!2.70e-33!172;CL:0000566!2.70e-33!172;CL:0000988!8.92e-31!182;CL:0002032!1.76e-30!165;CL:0000837!1.76e-30!165;CL:0002031!2.73e-30!124;CL:0002393!1.41e-14!9;CL:0002397!1.41e-14!9;CL:0000094!6.53e-14!8;CL:0000134!6.04e-11!358;CL:0002320!1.69e-10!365;CL:0000081!6.78e-10!11;CL:0000219!6.32e-09!390;CL:0000842!8.04e-09!3;CL:0000771!8.33e-08!2;CL:0000048!4.53e-07!430;CL:0000723!8.26e-07!436 | |ontology_enrichment_celltype=CL:0002057!4.90e-91!42;CL:0000860!2.84e-84!45;CL:0000766!1.11e-76!76;CL:0002194!1.02e-69!63;CL:0000576!1.02e-69!63;CL:0000040!1.02e-69!63;CL:0000559!1.02e-69!63;CL:0002009!2.89e-67!65;CL:0000839!9.66e-62!70;CL:0000557!9.95e-61!71;CL:0000763!2.51e-48!112;CL:0000049!2.51e-48!112;CL:0000738!9.04e-44!140;CL:0002087!1.54e-39!119;CL:0000037!2.70e-33!172;CL:0000566!2.70e-33!172;CL:0000988!8.92e-31!182;CL:0002032!1.76e-30!165;CL:0000837!1.76e-30!165;CL:0002031!2.73e-30!124;CL:0002393!1.41e-14!9;CL:0002397!1.41e-14!9;CL:0000094!6.53e-14!8;CL:0000134!6.04e-11!358;CL:0002320!1.69e-10!365;CL:0000081!6.78e-10!11;CL:0000219!6.32e-09!390;CL:0000842!8.04e-09!3;CL:0000771!8.33e-08!2;CL:0000048!4.53e-07!430;CL:0000723!8.26e-07!436 | ||
|ontology_enrichment_celltype_v019=CL:0000860;1.22e-85;33!CL:0002057;1.22e-85;33!CL:0000473;2.84e-57;39!CL:0000234;2.84e-57;39!CL:0000576;6.09e-43;48!CL:0000766;3.91e-26;69!CL:0000763;4.84e-18;100!CL:0000771;1.01e-16;2!CL:0000094;1.94e-15;8!CL:0002087;3.49e-12;104!CL:0000081;2.84e-11;11!CL:0000738;9.17e-11;136 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,3.89e-81,42;CL:0002057,3.89e-81,42;CL:0000473,1.54e-70,48;CL:0000234,1.54e-70,48;CL:0000766,1.38e-64,72;CL:0002194,1.08e-55,59;CL:0000576,1.08e-55,59;CL:0000040,1.08e-55,59;CL:0000559,1.08e-55,59;CL:0002009,8.90e-54,61;CL:0000839,1.74e-49,66;CL:0000557,1.06e-48,67;CL:0000763,6.03e-42,108;CL:0000049,6.03e-42,108;CL:0000738,1.52e-32,136;CL:0002087,5.65e-27,115;CL:0002032,6.88e-27,161;CL:0000837,6.88e-27,161;CL:0002031,1.06e-25,120;CL:0000037,1.33e-25,168;CL:0000988,4.24e-24,177;CL:0000771,1.01e-16,2;CL:0000094,1.65e-15,8;CL:0000081,2.52e-11,11;CL:0000134,6.22e-10,354;CL:0002320,1.18e-09,361;CL:0000219,1.13e-08,386;CL:0000048,1.81e-07,427;CL:0000723,2.66e-07,433;CL:0000034,4.37e-07,441 | |||
|ontology_enrichment_development_v019=CL:0002057;4.90e-62;42!CL:0000049;1.83e-15;108 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!3.67e-58!102;UBERON:0003061!3.67e-58!102;UBERON:0002193!1.78e-54!112;UBERON:0002371!9.67e-53!80;UBERON:0001474!2.46e-48!86;UBERON:0002405!1.44e-41!115;UBERON:0004765!1.34e-39!101;UBERON:0001434!1.34e-39!101;UBERON:0003081!4.41e-21!216;UBERON:0002204!5.76e-21!167;UBERON:0002384!1.41e-10!375;UBERON:0000926!1.26e-07!448;UBERON:0004120!1.26e-07!448;UBERON:0006603!1.26e-07!448 | |ontology_enrichment_uberon=UBERON:0002390!3.67e-58!102;UBERON:0003061!3.67e-58!102;UBERON:0002193!1.78e-54!112;UBERON:0002371!9.67e-53!80;UBERON:0001474!2.46e-48!86;UBERON:0002405!1.44e-41!115;UBERON:0004765!1.34e-39!101;UBERON:0001434!1.34e-39!101;UBERON:0003081!4.41e-21!216;UBERON:0002204!5.76e-21!167;UBERON:0002384!1.41e-10!375;UBERON:0000926!1.26e-07!448;UBERON:0004120!1.26e-07!448;UBERON:0006603!1.26e-07!448 | ||
|ontology_enrichment_uberon_v019=UBERON:0000029;1.47e-08;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,1.43e-42,76;UBERON:0001474,3.20e-39,82;UBERON:0002405,1.38e-37,93;UBERON:0004765,1.94e-35,90;UBERON:0002390,2.88e-32,98;UBERON:0003061,2.88e-32,98;UBERON:0002193,7.06e-32,108;UBERON:0001434,1.49e-31,100;UBERON:0002204,2.05e-17,167;UBERON:0003081,1.22e-13,203;UBERON:0002384,2.83e-09,371;UBERON:0000029,1.42e-08,1;UBERON:0000926,2.27e-07,315;UBERON:0004120,2.27e-07,315;UBERON:0006603,2.27e-07,315 | |||
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| ||
|short_description=p5@NLRC4 | |short_description=p5@NLRC4 | ||
}} | }} |
Latest revision as of 23:12, 16 September 2015
Short description: | p5@NLRC4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_NLRC4_5end |
Coexpression cluster: | C2_Eosinophils_Neutrophils_CD14_Whole_Basophils_Peripheral_Mast |
Association with transcript: | -24bp_to_NM_001199139_5end |
EntrezGene: | NLRC4 |
HGNC: | 16412 |
UniProt: | Q9NPP4 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 3.89e-81 | 42 |
CD14-positive, CD16-negative classical monocyte | 3.89e-81 | 42 |
defensive cell | 1.54e-70 | 48 |
phagocyte | 1.54e-70 | 48 |
myeloid leukocyte | 1.38e-64 | 72 |
monopoietic cell | 1.08e-55 | 59 |
monocyte | 1.08e-55 | 59 |
monoblast | 1.08e-55 | 59 |
promonocyte | 1.08e-55 | 59 |
macrophage dendritic cell progenitor | 8.90e-54 | 61 |
myeloid lineage restricted progenitor cell | 1.74e-49 | 66 |
granulocyte monocyte progenitor cell | 1.06e-48 | 67 |
myeloid cell | 6.03e-42 | 108 |
common myeloid progenitor | 6.03e-42 | 108 |
leukocyte | 1.52e-32 | 136 |
nongranular leukocyte | 5.65e-27 | 115 |
hematopoietic oligopotent progenitor cell | 6.88e-27 | 161 |
hematopoietic multipotent progenitor cell | 6.88e-27 | 161 |
hematopoietic lineage restricted progenitor cell | 1.06e-25 | 120 |
hematopoietic stem cell | 1.33e-25 | 168 |
hematopoietic cell | 4.24e-24 | 177 |
eosinophil | 1.01e-16 | 2 |
granulocyte | 1.65e-15 | 8 |
blood cell | 2.52e-11 | 11 |
mesenchymal cell | 6.22e-10 | 354 |
connective tissue cell | 1.18e-09 | 361 |
motile cell | 1.13e-08 | 386 |
multi fate stem cell | 1.81e-07 | 427 |
somatic stem cell | 2.66e-07 | 433 |
stem cell | 4.37e-07 | 441 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 1.43e-42 | 76 |
bone element | 3.20e-39 | 82 |
immune system | 1.38e-37 | 93 |
skeletal element | 1.94e-35 | 90 |
hematopoietic system | 2.88e-32 | 98 |
blood island | 2.88e-32 | 98 |
hemolymphoid system | 7.06e-32 | 108 |
skeletal system | 1.49e-31 | 100 |
musculoskeletal system | 2.05e-17 | 167 |
lateral plate mesoderm | 1.22e-13 | 203 |
connective tissue | 2.83e-09 | 371 |
lymph node | 1.42e-08 | 1 |
mesoderm | 2.27e-07 | 315 |
mesoderm-derived structure | 2.27e-07 | 315 |
presumptive mesoderm | 2.27e-07 | 315 |