FFCP PHASE1:Hg19::chr19:2476825..2476847,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(11 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=4616 | |EntrezGene=4616 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=4096 | |HGNC=4096 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-12bp_to_AK129595_5end | |association_with_transcript=-12bp_to_AK129595_5end | ||
|cluster_id=chr19:2476825..2476847,+ | |||
|coexpression_cluster_id=C168 | |||
|description=CAGE_peak_12_at_GADD45B_5end | |description=CAGE_peak_12_at_GADD45B_5end | ||
|id=chr19:2476825..2476847,+ | |id=chr19:2476825..2476847,+ | ||
|ontology_enrichment_celltype=CL:0000738!4.55e-17!140;CL:0002087!1.09e-12!119;CL:0000037!3.25e-12!172;CL:0000566!3.25e-12!172;CL:0002031!1.49e-11!124;CL:0002032!4.41e-11!165;CL:0000837!4.41e-11!165;CL:0000860!9.71e-11!45;CL:0000988!1.15e-10!182;CL:0002057!1.20e-10!42;CL:0000766!1.34e-10!76;CL:0000839!5.41e-07!70;CL:0000557!9.36e-07!71 | |ontology_enrichment_celltype=CL:0000738!4.55e-17!140;CL:0002087!1.09e-12!119;CL:0000037!3.25e-12!172;CL:0000566!3.25e-12!172;CL:0002031!1.49e-11!124;CL:0002032!4.41e-11!165;CL:0000837!4.41e-11!165;CL:0000860!9.71e-11!45;CL:0000988!1.15e-10!182;CL:0002057!1.20e-10!42;CL:0000766!1.34e-10!76;CL:0000839!5.41e-07!70;CL:0000557!9.36e-07!71 | ||
|ontology_enrichment_celltype_v019=CL:0000860;1.42e-21;33!CL:0002057;1.42e-21;33!CL:0000473;8.85e-16;39!CL:0000234;8.85e-16;39!CL:0000775;1.71e-12;3!CL:0000576;3.41e-11;48!CL:0000094;3.91e-10;8!CL:0000766;1.20e-09;69!CL:0000097;6.08e-08;5!CL:0000081;1.69e-07;11!CL:0000763;3.14e-07;100 | |||
|ontology_enrichment_celltype_v019_2=CL:0000766,3.44e-23,72;CL:0000860,3.58e-18,42;CL:0002057,3.58e-18,42;CL:0000839,6.30e-16,66;CL:0000473,1.04e-15,48;CL:0000234,1.04e-15,48;CL:0000557,1.16e-15,67;CL:0000763,1.16e-14,108;CL:0000049,1.16e-14,108;CL:0000738,1.30e-14,136;CL:0000775,1.62e-12,3;CL:0002194,2.93e-12,59;CL:0000576,2.93e-12,59;CL:0000040,2.93e-12,59;CL:0000559,2.93e-12,59;CL:0002009,8.18e-12,61;CL:0000037,2.81e-11,168;CL:0000988,1.48e-10,177;CL:0002032,2.19e-10,161;CL:0000837,2.19e-10,161;CL:0000094,3.74e-10,8;CL:0002031,2.23e-09,120;CL:0002087,3.42e-08,115;CL:0000097,6.08e-08,5;CL:0002028,6.08e-08,5;CL:0000081,1.64e-07,11 | |||
|ontology_enrichment_development_v019=CL:0002057;4.64e-11;42!UBERON:0005754;1.42e-09;1 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002405!5.36e-07!115 | |||
|ontology_enrichment_uberon_v019=UBERON:0000998;1.42e-09;1!UBERON:0006868;1.42e-09;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,4.88e-14,98;UBERON:0003061,4.88e-14,98;UBERON:0002371,1.35e-13,76;UBERON:0002193,1.59e-12,108;UBERON:0001474,1.82e-12,82;UBERON:0004765,3.43e-11,90;UBERON:0002405,9.07e-11,93;UBERON:0001434,7.00e-10,100;UBERON:0000998,1.62e-09,1;UBERON:0006868,1.62e-09,1;UBERON:0003081,1.30e-07,203 | |||
|phase1_expression=0.181678379270557,0.214100523890983,0.281908808191942,0,0,0,0,0,0,0,0,0,0.263766978228454,0,0,0,0,0,0,0,0,0,0,0.136874425072884,0.125542639594803,0.305653622991805,0.0821005894499457,0.157421562627358,0.393364276848904,0.383829398097213,0.154816123316076,0,0,0,0.0774672005803016,0.142169232487422,0,0,0.802177789880567,0,0.223915474239924,0,0.257575567634187,0,0,0,0.232429036905685,0,1.85823822537062,0.28769239232215,0.256160706529101,0.47296445977717,3.44745680736619,0.645484683583826,2.70852973188684,0.752969358170419,1.09162460023138,0,1.83650335422542,0.962787081228281,1.27867425159808,0,0.199463657621632,0.852449501065388,0.580418477257168,0,1.24564449799115,1.50749199154046,1.5644487552606,1.08594422352558,0.605399502633369,0.368277635987565,0.316462387440884,0,0.425208599930087,0.209658645508376,0,0,0,0,0,0.182664153764634,0,0,0,0,0,0,0,0,0.569212969109448,0.587237189370939,0.382273228125229,0,0,0,0,0.393010762749165,0.616804496998528,0,0.32592226663359,0,3.89653456815823,0.111410456885174,0,0,0,0,0.130059347559878,0,0,0,0,0,0,0,0,0.34362744548263,0,0,0,0,0.150575119077773,0,0,0,0,0.604820229674197,0.802320587350522,0.868946423296794,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,0,0.571994910780128,0,0,0,0,0,0,0,0,0,0,0.33472061276467,0,0.760272105718513,0.24406205754817,0,0,0,0,0,0,0,0,1.31780417436063,0,0,0.496971951695318,0,0.132409180813219,0.860509862246441,0.354668382198357,0,0,0.24666754841716,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.309977343527296,0,0,0,0,0,0,0,0,0,0,0,0.538168907066586,0,0,0,0,0,0,0.506328996723799,0.0974370051611986,0,0.0920498986422993,0,0,0,0,0,0,0,0,0,0,0,0.252320850875628,0,0,0.643240938192885,0,0,0.721879481669586,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.982827216677626,1.77236972004421,0.441463099414651,0,0,0,0,0,0.0925884451585296,0,0,0,0,0.117408694235822,0,0,0,0,0,0,0,0,0,0,0,0,0.290633938513962,0,0,0,9.74442143041629,0.864719720501769,6.81709140502452,0,0,0,0,0,0,0,0,0,0,0,0,0.845302752556,0,0,0,0,0,0.142977993658148,0,0.823240336780769,0,0.355391948742546,0,0,0,0,0,0,0,0,0,0,0,0.205476322550383,0,0.560425719967636,0.788123040807709,0.862510299438069,0.77005821767849,0.254094624222463,0,0,0,0,4.49404214368309,2.99161459204025,0.828831026872071,0,0,0,0,0.178428988797162,0,0,0,0,0,0,0,0,0,0,0,1.07857100409308,0.960548020230999,0.303127571446259,0,0,0,0.61384789315225,0.280660094433074,0.256278298511402,0,0.321707842287215,0,0,0,0,0,0,0.241718899183244,0,0.0920809889358963,0,0,0,0,0,0,0,0,0,0,0,1.54227252690289,0,0,0,0,0,0,0,0,0,0,0.309123034943167,0.0915694648183434,0,0,0,0,0,0,0,0,0,0.145016693914229,0,0.0890320356467374,0.165284915360978,0,0,0,0,0.31481234683064,0,0,0,0,0,0,0,0,0.190630193923825,0,0,0,0,0,0,0,0,0,0,0,0,0,0.136499911407986,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.329294892959902,0,0,0,0,0,0.376575203107117,0,0,0,0,0,0,0,0,0,0,0,1.58625035258854,0,0,0,0.371606350251437,0.144269212976445,0,0,0,0,0.846694330895531,0,0.280797178113459,0,0,0,0,0,0,0.425846237690326,0,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0,0.111443384277478,0,0,0,0,0,0.281338832821026,0.445234820091624,0.329607748453519,0,0.597743964753209,0.276283915531148,0,0.102268682502155,0,0.311039587661807,0.179736702294654,0,0,0,0,0,0,0.185536196323703,0,0,0,0.724999575434793,0.1137934482855,0,0,0,0,0.173624994933292,0,0.120596438625408,0,0.221158519862449,0,0,0,0.139423744278603,0.153900517007594,0.113942055847001,0,0.0897576444097721,0,0,0.0915975934018623,0,1.02193298195737,0.156980256395025,0,0,0,0,0,0.158936578980379,0,0,0,0,0,0,0,0,0.123563938946503,0,0.067401132980677,0,0,0.182454789215666,0,0,0,0,0,0.379119477770928,2.25485129121739,0,0,0,0,0,0,0.138674673013139,0,0.0979923974143777,0.0870592065804026,0.17472666824203,0,0,0.0730893170861856,0.164230914106418,0,0,0,0,0.19871461170299,0,0,0,0.426905989478705,0,0.144090417154106,0,0.171594997861965,0.14405479798815,0,0,0,0,0.203996435272644,0,0,0.136905378891993,0,0,0.262887354279314,0.558564802544508,0,0.717873024576814,0,0,0,0.0671834724867263,0,0,0,0.0824158583811665,0,0,0,0.795229689809303,0.272406812223151,0.321506296930038,0.137539436597234,0,0,0,0.0607495566580247,0,0,0,0,0,0.191915197319445,0,0,0,0,0,0,0,0,0.170388021785422,0,0.146552233678082,0,0,0.26446520348538,0,0,0.427149650270779,0.157204305099666,0,0.496166021811951,0.197611631897944,0.121792598380896,0,0.544017803369474,0.2506898940227,0.306345576763462,0,0.471162288750703,0,0.122026264901963,0.250381861413,0,0.221858103073705,0.0620964029413835,0,0,0.151649117541648,0.285465333544967,0.235265819698172,0,0,0,0.467426619694449,0,0.189403005275089,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.214821114084977,0,0,0,0,0,0,0,0,0,0,0,0,0.179088841081487,0,0,0.176689145945881,0,0,0,0,0,0.138258436151731,0.194860308839388,0,0,0,0,0.211312123358627,0.39997479170986,0.106691729694141,0.172214979660816,0,0.184105950251841,0,0,0,0,0.157265941855896,0,0,0.425149840203366,0.619678821295011,0,0.636008701306837,0.23658523500376,0,0.705351887381368,0.3062454773532,0.0642292250964595,0,0.478901577171454,0.205116364240755,0,0.0691572524642179,0.161475645631851,0,0,0,0,0.115525666150338,0,0,0.994581110581374,0.150420656698515,0,0,0,0.327543835020193,0,0,0,0,0,0,0,0,0,0.127762427639595,0,0,0.606965604236632,0,0.0887023701626388,0.230467975111559,0.171488009437418,0,0.0657727735628491,0,0,0.078493092850514,0,0,0,0,0,0.285906176706625,0.316027223465453,0,0,0,0,0,0,0,0,0.0852134047591577,1.27016115057279,0,0,0,0,0,0,0,0,0,0,0,0.596852325484105,0,0.22589216407792,0,0,0,0,0,0,0,1.17785080268967,0,0,0,0.0939839179798536,0.0644578879735772,0.0999411559249289,0,0.352894871715692,0.0802413666891683,0.730336388246517,0,0.286679166302903,0.157771562193185,0.0679914901909147,0,0,0,0,0,0,0,0,0.101988829741982,0,0.18378979906969,0.50141507858475,0.227336094654718,0,0.829169439458779,0.310298987585686,0,0,0.129177819672012,0.682821857254437,0.112131862580613,0.0636471582781649,0.202117188958219,0.435433495793923,0,0.0673520530145875,0.0717222053926763,0,0.0814032686109745,0.106727345877715,0,0.359300808426348,0,0,0,0,0,0 | |phase1_expression=0.181678379270557,0.214100523890983,0.281908808191942,0,0,0,0,0,0,0,0,0,0.263766978228454,0,0,0,0,0,0,0,0,0,0,0.136874425072884,0.125542639594803,0.305653622991805,0.0821005894499457,0.157421562627358,0.393364276848904,0.383829398097213,0.154816123316076,0,0,0,0.0774672005803016,0.142169232487422,0,0,0.802177789880567,0,0.223915474239924,0,0.257575567634187,0,0,0,0.232429036905685,0,1.85823822537062,0.28769239232215,0.256160706529101,0.47296445977717,3.44745680736619,0.645484683583826,2.70852973188684,0.752969358170419,1.09162460023138,0,1.83650335422542,0.962787081228281,1.27867425159808,0,0.199463657621632,0.852449501065388,0.580418477257168,0,1.24564449799115,1.50749199154046,1.5644487552606,1.08594422352558,0.605399502633369,0.368277635987565,0.316462387440884,0,0.425208599930087,0.209658645508376,0,0,0,0,0,0.182664153764634,0,0,0,0,0,0,0,0,0.569212969109448,0.587237189370939,0.382273228125229,0,0,0,0,0.393010762749165,0.616804496998528,0,0.32592226663359,0,3.89653456815823,0.111410456885174,0,0,0,0,0.130059347559878,0,0,0,0,0,0,0,0,0.34362744548263,0,0,0,0,0.150575119077773,0,0,0,0,0.604820229674197,0.802320587350522,0.868946423296794,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,0,0.571994910780128,0,0,0,0,0,0,0,0,0,0,0.33472061276467,0,0.760272105718513,0.24406205754817,0,0,0,0,0,0,0,0,1.31780417436063,0,0,0.496971951695318,0,0.132409180813219,0.860509862246441,0.354668382198357,0,0,0.24666754841716,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.309977343527296,0,0,0,0,0,0,0,0,0,0,0,0.538168907066586,0,0,0,0,0,0,0.506328996723799,0.0974370051611986,0,0.0920498986422993,0,0,0,0,0,0,0,0,0,0,0,0.252320850875628,0,0,0.643240938192885,0,0,0.721879481669586,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.982827216677626,1.77236972004421,0.441463099414651,0,0,0,0,0,0.0925884451585296,0,0,0,0,0.117408694235822,0,0,0,0,0,0,0,0,0,0,0,0,0.290633938513962,0,0,0,9.74442143041629,0.864719720501769,6.81709140502452,0,0,0,0,0,0,0,0,0,0,0,0,0.845302752556,0,0,0,0,0,0.142977993658148,0,0.823240336780769,0,0.355391948742546,0,0,0,0,0,0,0,0,0,0,0,0.205476322550383,0,0.560425719967636,0.788123040807709,0.862510299438069,0.77005821767849,0.254094624222463,0,0,0,0,4.49404214368309,2.99161459204025,0.828831026872071,0,0,0,0,0.178428988797162,0,0,0,0,0,0,0,0,0,0,0,1.07857100409308,0.960548020230999,0.303127571446259,0,0,0,0.61384789315225,0.280660094433074,0.256278298511402,0,0.321707842287215,0,0,0,0,0,0,0.241718899183244,0,0.0920809889358963,0,0,0,0,0,0,0,0,0,0,0,1.54227252690289,0,0,0,0,0,0,0,0,0,0,0.309123034943167,0.0915694648183434,0,0,0,0,0,0,0,0,0,0.145016693914229,0,0.0890320356467374,0.165284915360978,0,0,0,0,0.31481234683064,0,0,0,0,0,0,0,0,0.190630193923825,0,0,0,0,0,0,0,0,0,0,0,0,0,0.136499911407986,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.329294892959902,0,0,0,0,0,0.376575203107117,0,0,0,0,0,0,0,0,0,0,0,1.58625035258854,0,0,0,0.371606350251437,0.144269212976445,0,0,0,0,0.846694330895531,0,0.280797178113459,0,0,0,0,0,0,0.425846237690326,0,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0,0.111443384277478,0,0,0,0,0,0.281338832821026,0.445234820091624,0.329607748453519,0,0.597743964753209,0.276283915531148,0,0.102268682502155,0,0.311039587661807,0.179736702294654,0,0,0,0,0,0,0.185536196323703,0,0,0,0.724999575434793,0.1137934482855,0,0,0,0,0.173624994933292,0,0.120596438625408,0,0.221158519862449,0,0,0,0.139423744278603,0.153900517007594,0.113942055847001,0,0.0897576444097721,0,0,0.0915975934018623,0,1.02193298195737,0.156980256395025,0,0,0,0,0,0.158936578980379,0,0,0,0,0,0,0,0,0.123563938946503,0,0.067401132980677,0,0,0.182454789215666,0,0,0,0,0,0.379119477770928,2.25485129121739,0,0,0,0,0,0,0.138674673013139,0,0.0979923974143777,0.0870592065804026,0.17472666824203,0,0,0.0730893170861856,0.164230914106418,0,0,0,0,0.19871461170299,0,0,0,0.426905989478705,0,0.144090417154106,0,0.171594997861965,0.14405479798815,0,0,0,0,0.203996435272644,0,0,0.136905378891993,0,0,0.262887354279314,0.558564802544508,0,0.717873024576814,0,0,0,0.0671834724867263,0,0,0,0.0824158583811665,0,0,0,0.795229689809303,0.272406812223151,0.321506296930038,0.137539436597234,0,0,0,0.0607495566580247,0,0,0,0,0,0.191915197319445,0,0,0,0,0,0,0,0,0.170388021785422,0,0.146552233678082,0,0,0.26446520348538,0,0,0.427149650270779,0.157204305099666,0,0.496166021811951,0.197611631897944,0.121792598380896,0,0.544017803369474,0.2506898940227,0.306345576763462,0,0.471162288750703,0,0.122026264901963,0.250381861413,0,0.221858103073705,0.0620964029413835,0,0,0.151649117541648,0.285465333544967,0.235265819698172,0,0,0,0.467426619694449,0,0.189403005275089,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.214821114084977,0,0,0,0,0,0,0,0,0,0,0,0,0.179088841081487,0,0,0.176689145945881,0,0,0,0,0,0.138258436151731,0.194860308839388,0,0,0,0,0.211312123358627,0.39997479170986,0.106691729694141,0.172214979660816,0,0.184105950251841,0,0,0,0,0.157265941855896,0,0,0.425149840203366,0.619678821295011,0,0.636008701306837,0.23658523500376,0,0.705351887381368,0.3062454773532,0.0642292250964595,0,0.478901577171454,0.205116364240755,0,0.0691572524642179,0.161475645631851,0,0,0,0,0.115525666150338,0,0,0.994581110581374,0.150420656698515,0,0,0,0.327543835020193,0,0,0,0,0,0,0,0,0,0.127762427639595,0,0,0.606965604236632,0,0.0887023701626388,0.230467975111559,0.171488009437418,0,0.0657727735628491,0,0,0.078493092850514,0,0,0,0,0,0.285906176706625,0.316027223465453,0,0,0,0,0,0,0,0,0.0852134047591577,1.27016115057279,0,0,0,0,0,0,0,0,0,0,0,0.596852325484105,0,0.22589216407792,0,0,0,0,0,0,0,1.17785080268967,0,0,0,0.0939839179798536,0.0644578879735772,0.0999411559249289,0,0.352894871715692,0.0802413666891683,0.730336388246517,0,0.286679166302903,0.157771562193185,0.0679914901909147,0,0,0,0,0,0,0,0,0.101988829741982,0,0.18378979906969,0.50141507858475,0.227336094654718,0,0.829169439458779,0.310298987585686,0,0,0.129177819672012,0.682821857254437,0.112131862580613,0.0636471582781649,0.202117188958219,0.435433495793923,0,0.0673520530145875,0.0717222053926763,0,0.0814032686109745,0.106727345877715,0,0.359300808426348,0,0,0,0,0,0 | ||
|short_description=p12@GADD45B | |short_description=p12@GADD45B | ||
}} | }} |
Latest revision as of 01:24, 17 September 2015
Short description: | p12@GADD45B |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_12_at_GADD45B_5end |
Coexpression cluster: | C168_Mast_CD14_immature_Basophils_Eosinophils_CD34_Peripheral |
Association with transcript: | -12bp_to_AK129595_5end |
EntrezGene: | GADD45B |
HGNC: | 4096 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
myeloid leukocyte | 3.44e-23 | 72 |
classical monocyte | 3.58e-18 | 42 |
CD14-positive, CD16-negative classical monocyte | 3.58e-18 | 42 |
myeloid lineage restricted progenitor cell | 6.30e-16 | 66 |
defensive cell | 1.04e-15 | 48 |
phagocyte | 1.04e-15 | 48 |
granulocyte monocyte progenitor cell | 1.16e-15 | 67 |
myeloid cell | 1.16e-14 | 108 |
common myeloid progenitor | 1.16e-14 | 108 |
leukocyte | 1.30e-14 | 136 |
neutrophil | 1.62e-12 | 3 |
monopoietic cell | 2.93e-12 | 59 |
monocyte | 2.93e-12 | 59 |
monoblast | 2.93e-12 | 59 |
promonocyte | 2.93e-12 | 59 |
macrophage dendritic cell progenitor | 8.18e-12 | 61 |
hematopoietic stem cell | 2.81e-11 | 168 |
hematopoietic cell | 1.48e-10 | 177 |
hematopoietic oligopotent progenitor cell | 2.19e-10 | 161 |
hematopoietic multipotent progenitor cell | 2.19e-10 | 161 |
granulocyte | 3.74e-10 | 8 |
hematopoietic lineage restricted progenitor cell | 2.23e-09 | 120 |
nongranular leukocyte | 3.42e-08 | 115 |
mast cell | 6.08e-08 | 5 |
basophil mast progenitor cell | 6.08e-08 | 5 |
blood cell | 1.64e-07 | 11 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 4.88e-14 | 98 |
blood island | 4.88e-14 | 98 |
bone marrow | 1.35e-13 | 76 |
hemolymphoid system | 1.59e-12 | 108 |
bone element | 1.82e-12 | 82 |
skeletal element | 3.43e-11 | 90 |
immune system | 9.07e-11 | 93 |
skeletal system | 7.00e-10 | 100 |
seminal vesicle | 1.62e-09 | 1 |
seminal fluid secreting gland | 1.62e-09 | 1 |
lateral plate mesoderm | 1.30e-07 | 203 |