FFCP PHASE1:Hg19::chr6:21668692..21668725,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=401237 | |EntrezGene=401237 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=28245 | |HGNC=28245 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-152bp_to_uc011djk.1_5end | |association_with_transcript=-152bp_to_uc011djk.1_5end | ||
|cluster_id=chr6:21668692..21668725,+ | |||
|coexpression_cluster_id=C42 | |coexpression_cluster_id=C42 | ||
|description=CAGE_peak_19_at_LINC00340_5end | |description=CAGE_peak_19_at_LINC00340_5end | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype=CL:0000080!1.99e-09!6 | |ontology_enrichment_celltype=CL:0000080!1.99e-09!6 | ||
|ontology_enrichment_celltype_v019=CL:0000081;2.37e-10;11 | |ontology_enrichment_celltype_v019=CL:0000081;2.37e-10;11 | ||
|ontology_enrichment_celltype_v019_2=CL:0000081,2.37e-10,11 | |||
|ontology_enrichment_development_v019= | |ontology_enrichment_development_v019= | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:5409;5.56e-26;4!DOID:1325;1.65e-15;7!DOID:3904;1.65e-15;7!DOID:3905;2.19e-12;9!DOID:1324;5.55e-08;15!DOID:0050615;1.45e-07;16 | |ontology_enrichment_disease_v019=DOID:5409;5.56e-26;4!DOID:1325;1.65e-15;7!DOID:3904;1.65e-15;7!DOID:3905;2.19e-12;9!DOID:1324;5.55e-08;15!DOID:0050615;1.45e-07;16 | ||
|ontology_enrichment_disease_v019_2=DOID:5409,5.56e-26,4;DOID:1325,1.65e-15,7;DOID:3904,1.65e-15,7;DOID:3905,2.19e-12,9;DOID:1324,5.55e-08,15;DOID:0050615,1.45e-07,16 | |||
|ontology_enrichment_uberon=UBERON:0002135!5.15e-14!1;UBERON:0002022!1.83e-13!1;UBERON:0002133!1.20e-07!2;UBERON:0001875!1.36e-07!2;UBERON:0006514!1.36e-07!2;UBERON:0002148!1.54e-07!2;UBERON:0009662!1.54e-07!2 | |ontology_enrichment_uberon=UBERON:0002135!5.15e-14!1;UBERON:0002022!1.83e-13!1;UBERON:0002133!1.20e-07!2;UBERON:0001875!1.36e-07!2;UBERON:0006514!1.36e-07!2;UBERON:0002148!1.54e-07!2;UBERON:0009662!1.54e-07!2 | ||
|ontology_enrichment_uberon_v019=UBERON:0002331;3.02e-11;10!UBERON:0000178;5.93e-08;15!UBERON:0000179;5.93e-08;15!UBERON:0000463;5.93e-08;15 | |ontology_enrichment_uberon_v019=UBERON:0002331;3.02e-11;10!UBERON:0000178;5.93e-08;15!UBERON:0000179;5.93e-08;15!UBERON:0000463;5.93e-08;15 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0002331,3.02e-11,10;UBERON:0000358,3.02e-11,10;UBERON:0000307,3.02e-11,10;UBERON:0000091,3.02e-11,10;UBERON:0000087,3.02e-11,10;UBERON:0007010,3.02e-11,10;UBERON:0007806,3.02e-11,10;UBERON:0008780,3.02e-11,10;UBERON:0005728,3.02e-11,10;UBERON:0000178,5.93e-08,15;UBERON:0000179,5.93e-08,15;UBERON:0000463,5.93e-08,15 | |||
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|short_description=p19@LINC00340 | |short_description=p19@LINC00340 | ||
}} | }} |
Latest revision as of 04:10, 17 September 2015
Short description: | p19@LINC00340 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_19_at_LINC00340_5end |
Coexpression cluster: | C42_small_lung_maxillary_pharyngeal_Mesenchymal_Wilms_colon |
Association with transcript: | -152bp_to_uc011djk.1_5end |
EntrezGene: | LINC00340 |
HGNC: | 28245 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
blood cell | 2.37e-10 | 11 |
Ontology term | p-value | n |
---|---|---|
umbilical cord | 3.02e-11 | 10 |
blastocyst | 3.02e-11 | 10 |
blastula | 3.02e-11 | 10 |
bilaminar disc | 3.02e-11 | 10 |
inner cell mass | 3.02e-11 | 10 |
cleaving embryo | 3.02e-11 | 10 |
connecting stalk | 3.02e-11 | 10 |
inner cell mass derived epiblast | 3.02e-11 | 10 |
extraembryonic mesoderm | 3.02e-11 | 10 |
blood | 5.93e-08 | 15 |
haemolymphatic fluid | 5.93e-08 | 15 |
organism substance | 5.93e-08 | 15 |
Ontology term | p-value | n |
---|---|---|
lung small cell carcinoma | 5.56e-26 | 4 |
bronchus cancer | 1.65e-15 | 7 |
bronchogenic carcinoma | 1.65e-15 | 7 |
lung carcinoma | 2.19e-12 | 9 |
lung cancer | 5.55e-08 | 15 |
respiratory system cancer | 1.45e-07 | 16 |