FFCP PHASE1:Hg19::chr6:24667040..24667054,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr6:24667040..24667054,- to FFCP PHASE1:Hg19::chr6:24667040..24667054,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=51567 | |EntrezGene=51567 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=17768 | |HGNC=17768 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-26bp_to_ENST00000480495_5end | |||
|cluster_id=chr6:24667040..24667054,- | |||
|description=CAGE_peak_4_at_TDP2_5end | |||
|id=chr6:24667040..24667054,- | |||
|ontology_enrichment_celltype=CL:0000037!5.21e-24!172;CL:0000566!5.21e-24!172;CL:0002032!1.23e-23!165;CL:0000837!1.23e-23!165;CL:0000763!1.57e-23!112;CL:0000049!1.57e-23!112;CL:0000766!2.65e-23!76;CL:0000988!4.76e-23!182;CL:0000738!4.97e-23!140;CL:0000839!4.72e-21!70;CL:0000557!2.59e-19!71;CL:0002031!3.04e-19!124;CL:0002009!1.38e-18!65;CL:0002194!1.60e-18!63;CL:0000576!1.60e-18!63;CL:0000040!1.60e-18!63;CL:0000559!1.60e-18!63;CL:0002087!2.04e-17!119;CL:0000860!1.88e-14!45;CL:0002057!2.59e-13!42;CL:0000134!3.96e-12!358;CL:0002320!9.02e-12!365;CL:0000219!8.71e-09!390;CL:0000048!6.00e-08!430;CL:0000034!1.60e-07!444;CL:0000723!2.79e-07!436 | |||
|ontology_enrichment_celltype_v019=CL:0000473;3.62e-23;39!CL:0000234;3.62e-23;39!CL:0000860;3.38e-22;33!CL:0002057;3.38e-22;33!CL:0000576;4.16e-12;48!CL:0000766;1.42e-11;69!CL:0000763;1.86e-09;100!CL:0000235;3.86e-08;6!CL:0000738;2.79e-07;136 | |||
|ontology_enrichment_celltype_v019_2=CL:0000766,1.39e-29,72;CL:0000738,4.46e-27,136;CL:0000988,4.99e-27,177;CL:0000763,5.85e-27,108;CL:0000049,5.85e-27,108;CL:0002032,6.09e-27,161;CL:0000837,6.09e-27,161;CL:0000037,6.14e-27,168;CL:0000839,9.13e-27,66;CL:0002194,1.43e-23,59;CL:0000576,1.43e-23,59;CL:0000040,1.43e-23,59;CL:0000559,1.43e-23,59;CL:0000557,2.21e-23,67;CL:0002031,1.53e-22,120;CL:0002009,2.77e-22,61;CL:0000473,2.96e-22,48;CL:0000234,2.96e-22,48;CL:0002087,1.11e-20,115;CL:0000860,1.25e-16,42;CL:0002057,1.25e-16,42;CL:0000134,8.91e-11,354;CL:0002320,5.75e-10,361;CL:0000219,3.25e-08,386;CL:0000235,4.47e-08,6 | |||
|ontology_enrichment_development_v019=CL:0002057;5.18e-13;42!CL:0000049;3.43e-08;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!7.97e-22!102;UBERON:0003061!7.97e-22!102;UBERON:0002193!1.95e-20!112;UBERON:0002371!3.08e-16!80;UBERON:0001474!4.05e-15!86;UBERON:0004765!3.13e-13!101;UBERON:0001434!3.13e-13!101;UBERON:0002405!1.21e-12!115;UBERON:0002384!6.67e-11!375 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;6.13e-08;15!UBERON:0000179;6.13e-08;15!UBERON:0000463;6.13e-08;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,1.57e-25,98;UBERON:0003061,1.57e-25,98;UBERON:0002193,6.22e-24,108;UBERON:0002371,1.27e-20,76;UBERON:0001474,1.12e-18,82;UBERON:0002405,6.13e-18,93;UBERON:0004765,1.52e-15,90;UBERON:0001434,9.34e-15,100;UBERON:0002384,2.89e-09,371;UBERON:0003081,4.67e-08,203;UBERON:0000178,1.68e-07,15;UBERON:0000179,1.68e-07,15;UBERON:0000463,1.68e-07,15 | |||
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| ||
|short_description=p4@TDP2 | |||
}} | }} |
Latest revision as of 06:19, 17 September 2015
Short description: | p4@TDP2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_TDP2_5end |
Coexpression cluster: | NA |
Association with transcript: | -26bp_to_ENST00000480495_5end |
EntrezGene: | TDP2 |
HGNC: | 17768 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
myeloid leukocyte | 1.39e-29 | 72 |
leukocyte | 4.46e-27 | 136 |
hematopoietic cell | 4.99e-27 | 177 |
myeloid cell | 5.85e-27 | 108 |
common myeloid progenitor | 5.85e-27 | 108 |
hematopoietic oligopotent progenitor cell | 6.09e-27 | 161 |
hematopoietic multipotent progenitor cell | 6.09e-27 | 161 |
hematopoietic stem cell | 6.14e-27 | 168 |
myeloid lineage restricted progenitor cell | 9.13e-27 | 66 |
monopoietic cell | 1.43e-23 | 59 |
monocyte | 1.43e-23 | 59 |
monoblast | 1.43e-23 | 59 |
promonocyte | 1.43e-23 | 59 |
granulocyte monocyte progenitor cell | 2.21e-23 | 67 |
hematopoietic lineage restricted progenitor cell | 1.53e-22 | 120 |
macrophage dendritic cell progenitor | 2.77e-22 | 61 |
defensive cell | 2.96e-22 | 48 |
phagocyte | 2.96e-22 | 48 |
nongranular leukocyte | 1.11e-20 | 115 |
classical monocyte | 1.25e-16 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.25e-16 | 42 |
mesenchymal cell | 8.91e-11 | 354 |
connective tissue cell | 5.75e-10 | 361 |
motile cell | 3.25e-08 | 386 |
macrophage | 4.47e-08 | 6 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 1.57e-25 | 98 |
blood island | 1.57e-25 | 98 |
hemolymphoid system | 6.22e-24 | 108 |
bone marrow | 1.27e-20 | 76 |
bone element | 1.12e-18 | 82 |
immune system | 6.13e-18 | 93 |
skeletal element | 1.52e-15 | 90 |
skeletal system | 9.34e-15 | 100 |
connective tissue | 2.89e-09 | 371 |
lateral plate mesoderm | 4.67e-08 | 203 |
blood | 1.68e-07 | 15 |
haemolymphatic fluid | 1.68e-07 | 15 |
organism substance | 1.68e-07 | 15 |