FFCP PHASE1:Hg19::chr10:14050159..14050191,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(2 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=55691 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=25491 | |||
|TSSclassifier=strong | |||
|UniProt=Q5T378 | |||
|association_with_transcript=0bp_to_uc001imu.1_5end | |||
|cluster_id=chr10:14050159..14050191,- | |||
|description=CAGE_peak_6_at_FRMD4A_5end | |||
|id=chr10:14050159..14050191,- | |||
|ontology_enrichment_celltype=CL:0000055!1.90e-22!180;CL:0000057!1.93e-11!75;CL:0000183!2.61e-11!59;CL:0000187!1.32e-10!54;CL:0000680!2.97e-10!57;CL:0000056!2.97e-10!57;CL:0000355!2.97e-10!57;CL:0000192!6.90e-09!42;CL:0000514!6.90e-09!42;CL:0000393!1.55e-08!60;CL:0000211!1.55e-08!60;CL:0000222!1.94e-07!119 | |||
|ontology_enrichment_celltype_v019=CL:0000499;2.53e-08;28!CL:0000327;1.73e-07;15!CL:0000192;7.41e-07;43 | |||
|ontology_enrichment_celltype_v019_2=CL:0000187,4.51e-10,55;CL:0000680,4.18e-09,58;CL:0000056,4.18e-09,58;CL:0000355,4.18e-09,58;CL:0000192,1.57e-08,43;CL:0000514,1.57e-08,43;CL:0000393,3.02e-08,61;CL:0000211,3.02e-08,61;CL:0000499,3.09e-08,28;CL:0000327,1.90e-07,15;CL:0000048,2.86e-07,427;CL:0000057,4.14e-07,76;CL:0000723,8.52e-07,433 | |||
|ontology_enrichment_development_v019=CL:0000514;7.41e-07;43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000914!6.16e-13!83;UBERON:0002329!6.16e-13!83;UBERON:0003077!6.16e-13!83;UBERON:0003059!6.16e-13!83;UBERON:0007282!6.16e-13!83;UBERON:0009618!6.16e-13!83;UBERON:0007285!6.16e-13!83;UBERON:0004290!5.25e-12!70;UBERON:0002385!3.43e-11!63;UBERON:0001015!3.43e-11!63;UBERON:0000383!3.43e-11!63;UBERON:0001134!4.20e-11!61;UBERON:0002036!4.20e-11!61;UBERON:0003082!4.20e-11!61;UBERON:0000486!1.69e-10!82;UBERON:0002049!2.02e-10!79;UBERON:0007798!2.02e-10!79;UBERON:0004535!2.41e-09!110;UBERON:0005256!1.41e-08!143;UBERON:0001009!1.68e-08!113;UBERON:0000475!4.27e-08!365;UBERON:0004872!4.79e-08!84;UBERON:0000055!5.43e-08!69 | |||
|ontology_enrichment_uberon_v019=UBERON:0002385;2.68e-08;31!UBERON:0001015;2.68e-08;31!UBERON:0000383;2.68e-08;31!UBERON:0004905;5.75e-08;8!UBERON:0000982;5.75e-08;8!UBERON:0004770;5.75e-08;8!UBERON:0002204;1.34e-07;70!UBERON:0001135;1.72e-07;15!UBERON:0001434;3.34e-07;36!UBERON:0004765;7.53e-07;26 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007524,2.23e-09,73;UBERON:0001134,2.32e-09,62;UBERON:0002036,2.32e-09,62;UBERON:0003082,2.32e-09,62;UBERON:0002329,4.75e-09,71;UBERON:0003059,4.75e-09,71;UBERON:0007282,4.75e-09,71;UBERON:0004290,4.75e-09,71;UBERON:0009618,4.75e-09,71;UBERON:0003077,8.60e-09,72;UBERON:0007285,8.60e-09,72;UBERON:0002385,8.65e-09,64;UBERON:0001015,8.65e-09,64;UBERON:0000383,8.65e-09,64;UBERON:0000486,1.71e-08,83;UBERON:0004905,8.75e-08,8;UBERON:0000982,8.75e-08,8;UBERON:0004770,8.75e-08,8;UBERON:0007503,2.08e-07,78;UBERON:0001135,2.43e-07,15;UBERON:0004573,4.74e-07,33;UBERON:0004571,4.74e-07,33 | |||
|phase1_expression=0.181678379270557,0,0.140954404095971,0,0.893922188854576,0,0,0,0,0,0,0,0,1.36142988256051,1.32558950291166,1.34465029290355,3.61616716814386,5.11217063271161,1.46379839637152,0.861847406537515,1.22400414746552,0.313454721478088,0.572471974262113,0.273748850145768,0.627713197974014,3.132949635666,2.29881650459848,2.12519109546934,0,0,0,0,0,0,0,0.995184627411951,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.344745680736619,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196709770113833,0,0,0,0,0.946895611469467,0,0.222820913770347,0,0.443067789167242,0.270803863765016,0.384273959177026,0.130059347559878,0,0,0,0,0,0,0,0.383220493601921,0.34362744548263,1.01207876807801,0,0,0,0.301150238155546,0,0,0.236777252044017,0,0,0,0.144824403882799,0,0,0.639312809217652,0,1.50401373190767,0.869079113764942,0.795285947051099,3.89307896242109,0.850813354476611,0.221729397462564,0,0.654895377488563,0,0,0,0,0,0,0,0,0,0,1.04142150482278,0,0.419499436209906,0,0.208994966536811,1.55050055501597,1.42306505074684,1.33888245105868,0,0.760272105718513,0.732186172644509,0.735326160691737,0,0.446498641420399,1.12264686313085,0.675668882899933,0,0.949265659568129,0.549605231791222,0,0,0,4.96971951695318,1.64619665163954,8.07696002960635,8.3182620017156,2.12801029319014,0.560677600142307,3.20246987189115,0.98667019366864,0.311211035399766,1.21239604862719,0.326923806226917,8.62737337576109,9.79499071615998,0.234321431833797,0.312160076830321,0,0.298897361103602,0.469737994575059,0.161872944368132,1.12360645361799,1.42907919878425,0.859840221182376,1.13658359293342,1.18800285728205,1.7308685049499,4.55080680969013,0,0.673344455816265,0.500474079487857,0,1.75591048352335,1.83892677479412,2.70428506031874,0.226864366320042,1.07633781413317,1.70845911054854,0.635795703478686,0.900273288253207,1.13357782162283,4.12224864073007,0.930584281657949,0.337552664482532,0.0974370051611986,0.252433774244115,1.19664868234989,1.93975268182574,1.06502877754984,0.10075209822764,0.508681776931463,0,0,0,0,0,0,0,0,0,3.12899064659632,0.643240938192885,1.38134921352481,0.928735856063958,0,0,0,0,0,0,0,0,0,0,0.738155454624648,0,2.057870056657,0,0,0,0,0,0,0.171567810298526,0,0,0,0,0,0,0,0.231860809950154,0.234817388471643,1.87676382089396,2.77791307545966,1.14152491340759,0,0,0,0,0,0,0,0,0,0,0.383382679165211,0,0,0,0,0.25248486685276,0,0,0,0,0,0.300343057843917,0,2.5790149399433,3.05172048183296,1.3200891447771,2.45616259939778,0,0.845302752556,0.531876233169741,0,1.02882949704857,0,0,0.57191197463259,0.542621605391443,0.823240336780769,0,0.355391948742546,0,0.602878754119172,0,0.199945982364114,0,0,0,3.59437283237374,6.89171615004683,0,0.289562613335158,0,0.537182889719687,0,0,0,0,0,0,0,0,0.637938751653163,0,0,0,2.4538298343828,2.00068208423871,1.35632511849868,2.28767947683888,0.892144943985809,1.10391690523754,2.57711112983969,2.10662269809403,0,0,1.99267679560631,1.47495334833363,1.73767228936166,3.52442083432933,2.40200396667599,0,0.215714200818617,0,0,0,0,0.496215615637554,0.153461973288062,0.280660094433074,0.640695746278505,0,0.804269605718038,0,1.23367755042124,1.24293207719189,1.14978018419333,2.07701771673448,0.813472649219715,0,0,0,1.14814448164607,3.09554985611419,2.36023946926963,0.902399225814824,0,0.784349769176855,0,0.105551628892876,0,0.510281115829547,0.431831832204279,0,0.541892875087706,0,0,0,0.223874754722178,0,0,0.256450125116389,0,0,0.309123034943167,2.65551447973196,3.96045599618822,0.574265537996172,0,3.21367859688319,2.41676795730305,0.616194468458578,0.767518373630648,1.92971201478343,3.33002759091648,2.32026710262766,2.04543905798642,3.20515328328254,0,0,0,0,0,6.92587163027408,0.6970372701606,1.23213432070436,1.06461206063404,2.60979897622522,2.7798632865588,1.28812398067792,5.21021717103534,3.79655309662471,0.762520775695299,0.255897791311334,2.1396949401696,0.95460974377781,2.35484592059769,4.13706652441624,6.86342574340137,3.18093486333353,1.01091240786658,0,0.842516912477962,0,2.68084838594413,0,0.818999468447914,2.12108147930569,0,0,0,1.75380354101505,0.578775534266688,1.9676842561399,1.82619339266434,0,1.40847801266121,0.430234056612155,0.687743287091848,0.7133421029625,0.354761064070598,1.26664581178598,8.56166721695745,0.379473173765715,0.349934720244983,0,0,0,0.470719003883896,0,0,0,0,0,0,0,0.238231775457789,0.411362273086194,0,0,0,0.106824071127473,10.5872784078969,0.245040215981032,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19538809540204,0,0,0,0,0,0,0.586032717087576,0,0,0,0,0,0,0,0,1.33570446027487,0,0.63337622438398,0.996239941255349,0.552567831062295,0,0.409074730008619,0,1.55519793830904,0.539210106883961,0,0,0.789147245095469,0,2.22273980289274,0,0.371072392647405,0,0,0,0,0,0,0,0,0,5.03512485306548,0,0,0,0,0,0,0,0,0.923403102045565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.176915129006678,0.611030144933625,0.889563386041866,0.494255755786011,0.626531697032732,0.134802265961354,1.60515529459758,0,0,0,0,0,4.83962864194656,0.91821828489147,13.8378609386389,0.150323419414493,0.103688191397247,1.99396161812156,3.30991955875499,1.56966459203613,0,0,1.24807205711825,0,0,0,1.39781334593624,1.54787429224455,0,0,0,0.290967049465258,3.17722056089401,1.12990370390266,3.15196426687527,0.596143835108969,0.316553979779393,0,0.561111741760736,0.426905989478705,0,0,0,0,0,0.124252535565433,0,0.67952103036807,1.35983700206033,0.713987523454252,3.17845648891671,0,0.273810757783986,0,2.14882720709979,0,0,0.916641696046735,0,0,0,0,1.47803639470798,2.88239906833923,0,0,0,0,0.78741985211799,9.06004653103894,0,0.272406812223151,0,0,0,0,0,0.364497339948148,0,0.0788057072991982,3.40954822877488,0.316801009558219,0,0.191915197319445,0,0,5.84817636605925,0,0,0,0,0,3.57814845749386,2.03961764736226,0.146552233678082,0,0,0.13223260174269,0,0,0,4.24451623769098,0.414239055347196,0.496166021811951,0,0,0,0.544017803369474,0.7520696820681,0,0,0,0,0.244052529803926,0.1251909307065,0,0.443716206147409,0.869349641179368,0,0,0,0.285465333544967,0.470531639396343,0,0,1.34329322598187,2.10341978862502,4.99325275352352,2.46223906857616,5.53449383855665,1.77962244319307,0.228840068396924,1.36107831386915,3.41961841282117,1.62640664988597,2.38945150745554,6.29724357029046,2.94999618064893,1.65882483136342,1.59505028734797,1.04349012362347,3.30566739793881,0,0.813741466409323,2.90957854724095,1.71856891267982,3.71227007902795,0.796191777397232,0,1.03018711554838,1.01024846629776,8.83294287600557,0,0,0,0,0.463044948647668,0,0.179088841081487,0,0,0.176689145945881,0,0,0,0,0,0.138258436151731,0,0,0,0.982829546539238,0.245772908753719,0.211312123358627,0,0,0,3.97261167496785,1.84105950251841,0,0,0,0,0,0.109209638192014,0,5.95209776284712,0,0,2.22603045457393,0,0,3.52675943690684,0,0.449604575675217,0,0.478901577171454,0,1.26035848110859,0.0691572524642179,0.322951291263702,1.42769420259154,0,0,0,0,1.90691047733584,0.690359926060101,1.39241355481392,0.225630985047772,1.61364054962816,0,0,0,0,0.0675375846183947,0,0,0.317079050969534,2.18789923607288,0,1.98484471355718,1.40696995487696,0,0,1.00885116665647,0.606965604236632,0.455324382702595,0.620916591138472,4.95506146489851,0.342976018874837,0.203909198930495,0.328863867814245,0,0,0.78493092850514,0,0,5.47895232305697,0,0,1.92986669276972,0,0,3.99874026295933,4.81026818838152,0,0,0,0,2.95830001826413,3.15289597608883,0,0,0,0,0,0,0,0.647428837187895,0.307988420568741,1.1598144313382,3.88568794447312,0,0,0,0,0.659643100472575,0.452888530700021,0.231522474323834,1.74847648403166,0,0.490296643507811,0,0.785233868459781,0,1.6906229103336,0.509781344063451,0.375935671919414,2.51385763096951,2.29864658627337,0,0,0,0.730336388246517,0,0.286679166302903,17.3548718412503,0.135982980381829,0,4.2322147241232,1.48798007266701,0.924351257262837,1.29787968637137,0.252332849670158,0,0,0,0,0.0918948995348449,0,0.151557396436479,0.267964130156178,0,0.413731983447581,1.49263787330687,2.14257988317366,0.775066918032073,1.11734485732544,1.23345048838675,0,1.0105859447911,0.653150243690884,0.342233301085281,0.875576689189638,0.143444410785353,5.65522606128223,0.325613074443898,0.213454691755431,0,0.179650404213174,0,1.22241444182866,3.25516942652591,0.665756774185513,1.61019034872821,1.28227396921293 | |||
|short_description=p6@FRMD4A | |||
}} |
Latest revision as of 07:03, 17 September 2015
Short description: | p6@FRMD4A |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_FRMD4A_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_uc001imu.1_5end |
EntrezGene: | FRMD4A |
HGNC: | 25491 |
UniProt: | Q5T378 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
muscle cell | 4.51e-10 | 55 |
muscle precursor cell | 4.18e-09 | 58 |
myoblast | 4.18e-09 | 58 |
multi-potent skeletal muscle stem cell | 4.18e-09 | 58 |
smooth muscle cell | 1.57e-08 | 43 |
smooth muscle myoblast | 1.57e-08 | 43 |
electrically responsive cell | 3.02e-08 | 61 |
electrically active cell | 3.02e-08 | 61 |
stromal cell | 3.09e-08 | 28 |
extracellular matrix secreting cell | 1.90e-07 | 15 |
multi fate stem cell | 2.86e-07 | 427 |
fibroblast | 4.14e-07 | 76 |
somatic stem cell | 8.52e-07 | 433 |
Ontology term | p-value | n |
---|---|---|
dense mesenchyme tissue | 2.23e-09 | 73 |
skeletal muscle tissue | 2.32e-09 | 62 |
striated muscle tissue | 2.32e-09 | 62 |
myotome | 2.32e-09 | 62 |
somite | 4.75e-09 | 71 |
presomitic mesoderm | 4.75e-09 | 71 |
presumptive segmental plate | 4.75e-09 | 71 |
dermomyotome | 4.75e-09 | 71 |
trunk paraxial mesoderm | 4.75e-09 | 71 |
paraxial mesoderm | 8.60e-09 | 72 |
presumptive paraxial mesoderm | 8.60e-09 | 72 |
muscle tissue | 8.65e-09 | 64 |
musculature | 8.65e-09 | 64 |
musculature of body | 8.65e-09 | 64 |
multilaminar epithelium | 1.71e-08 | 83 |
articulation | 8.75e-08 | 8 |
skeletal joint | 8.75e-08 | 8 |
articular system | 8.75e-08 | 8 |
epithelial vesicle | 2.08e-07 | 78 |
smooth muscle tissue | 2.43e-07 | 15 |
systemic artery | 4.74e-07 | 33 |
systemic arterial system | 4.74e-07 | 33 |