FFCP PHASE1:Hg19::chr10:16859442..16859458,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr10:16859442..16859458,-
|short_description=p2@RSU1
|description=CAGE_peak_2_at_RSU1_5end
|association_with_transcript=0bp_to_NM_012425,NM_152724,uc001iol.2,u...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=6251 | |EntrezGene=6251 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10464 | |HGNC=10464 | ||
|UniProt=Q15404, | |TSSclassifier=strong | ||
|UniProt=Q15404,A8KA46 | |||
|association_with_transcript=0bp_to_NM_012425,NM_152724,uc001iol.2,uc001iom.2,uc001ion.2_5end | |||
|cluster_id=chr10:16859442..16859458,- | |||
|description=CAGE_peak_2_at_RSU1_5end | |||
|id=chr10:16859442..16859458,- | |||
|ontology_enrichment_celltype=CL:0000055!6.78e-18!180;CL:0000393!2.79e-11!60;CL:0000211!2.79e-11!60;CL:0000183!2.55e-10!59;CL:0000680!2.56e-10!57;CL:0000056!2.56e-10!57;CL:0000355!2.56e-10!57;CL:0000187!6.75e-10!54;CL:0000057!7.66e-10!75;CL:0000359!1.89e-09!32;CL:0000048!1.92e-09!430;CL:0000192!3.05e-09!42;CL:0000514!3.05e-09!42;CL:0000723!3.52e-08!436;CL:0000034!6.13e-08!444 | |||
|ontology_enrichment_celltype_v019=CL:0000359;1.06e-08;32 | |||
|ontology_enrichment_celltype_v019_2=CL:0000393,4.13e-11,61;CL:0000211,4.13e-11,61;CL:0000048,3.56e-10,427;CL:0000680,3.72e-10,58;CL:0000056,3.72e-10,58;CL:0000355,3.72e-10,58;CL:0000057,6.31e-10,76;CL:0000187,9.84e-10,55;CL:0000359,1.89e-09,32;CL:0000192,4.76e-09,43;CL:0000514,4.76e-09,43;CL:0000723,7.51e-09,433;CL:0000034,1.35e-08,441 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004290!2.23e-10!70;UBERON:0002385!3.49e-10!63;UBERON:0001015!3.49e-10!63;UBERON:0000383!3.49e-10!63;UBERON:0000914!3.61e-10!83;UBERON:0002329!3.61e-10!83;UBERON:0003077!3.61e-10!83;UBERON:0003059!3.61e-10!83;UBERON:0007282!3.61e-10!83;UBERON:0009618!3.61e-10!83;UBERON:0007285!3.61e-10!83;UBERON:0001134!4.00e-10!61;UBERON:0002036!4.00e-10!61;UBERON:0003082!4.00e-10!61;UBERON:0001009!3.74e-08!113;UBERON:0000486!7.39e-08!82;UBERON:0004535!8.07e-08!110;UBERON:0002049!9.39e-08!79;UBERON:0007798!9.39e-08!79;UBERON:0000475!1.04e-07!365 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007524,2.31e-10,73;UBERON:0002329,3.04e-10,71;UBERON:0003059,3.04e-10,71;UBERON:0007282,3.04e-10,71;UBERON:0004290,3.04e-10,71;UBERON:0009618,3.04e-10,71;UBERON:0003077,3.78e-10,72;UBERON:0007285,3.78e-10,72;UBERON:0002385,4.88e-10,64;UBERON:0001015,4.88e-10,64;UBERON:0000383,4.88e-10,64;UBERON:0001134,5.63e-10,62;UBERON:0002036,5.63e-10,62;UBERON:0003082,5.63e-10,62;UBERON:0007503,6.64e-10,78;UBERON:0001009,4.56e-08,112;UBERON:0000486,8.98e-08,83;UBERON:0004535,9.84e-08,109;UBERON:0002049,1.14e-07,78;UBERON:0007798,1.14e-07,78 | |||
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| ||
|short_description=p2@RSU1 | |||
}} | }} |
Latest revision as of 09:17, 17 September 2015
Short description: | p2@RSU1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_RSU1_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_NM_012425, NM_152724, uc001iol.2, uc001iom.2, uc001ion.2_5end |
EntrezGene: | RSU1 |
HGNC: | 10464 |
UniProt: | Q15404A8KA46 |
Genome view: | ZENBU |
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CAGE Expression
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Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
electrically responsive cell | 4.13e-11 | 61 |
electrically active cell | 4.13e-11 | 61 |
multi fate stem cell | 3.56e-10 | 427 |
muscle precursor cell | 3.72e-10 | 58 |
myoblast | 3.72e-10 | 58 |
multi-potent skeletal muscle stem cell | 3.72e-10 | 58 |
fibroblast | 6.31e-10 | 76 |
muscle cell | 9.84e-10 | 55 |
vascular associated smooth muscle cell | 1.89e-09 | 32 |
smooth muscle cell | 4.76e-09 | 43 |
smooth muscle myoblast | 4.76e-09 | 43 |
somatic stem cell | 7.51e-09 | 433 |
stem cell | 1.35e-08 | 441 |
Ontology term | p-value | n |
---|---|---|
dense mesenchyme tissue | 2.31e-10 | 73 |
somite | 3.04e-10 | 71 |
presomitic mesoderm | 3.04e-10 | 71 |
presumptive segmental plate | 3.04e-10 | 71 |
dermomyotome | 3.04e-10 | 71 |
trunk paraxial mesoderm | 3.04e-10 | 71 |
paraxial mesoderm | 3.78e-10 | 72 |
presumptive paraxial mesoderm | 3.78e-10 | 72 |
muscle tissue | 4.88e-10 | 64 |
musculature | 4.88e-10 | 64 |
musculature of body | 4.88e-10 | 64 |
skeletal muscle tissue | 5.63e-10 | 62 |
striated muscle tissue | 5.63e-10 | 62 |
myotome | 5.63e-10 | 62 |
epithelial vesicle | 6.64e-10 | 78 |
circulatory system | 4.56e-08 | 112 |
multilaminar epithelium | 8.98e-08 | 83 |
cardiovascular system | 9.84e-08 | 109 |
vasculature | 1.14e-07 | 78 |
vascular system | 1.14e-07 | 78 |