FFCP PHASE1:Hg19::chr10:17243357..17243399,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr10:17243357..17243399,- to FFCP PHASE1:Hg19::chr10:17243357..17243399,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=1787 | |EntrezGene=1787 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2977 | |HGNC=2977 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=27bp_to_ENST00000486947_5end | |||
|cluster_id=chr10:17243357..17243399,- | |||
|coexpression_cluster_id=C82 | |||
|description=CAGE_peak_2_at_TRDMT1_5end | |||
|id=chr10:17243357..17243399,- | |||
|ontology_enrichment_celltype=CL:0000557!2.70e-27!71;CL:0002057!5.37e-27!42;CL:0000766!2.77e-26!76;CL:0000860!5.77e-26!45;CL:0002009!1.22e-24!65;CL:0000839!9.38e-24!70;CL:0002194!2.63e-23!63;CL:0000576!2.63e-23!63;CL:0000040!2.63e-23!63;CL:0000559!2.63e-23!63;CL:0000738!1.44e-20!140;CL:0002031!2.38e-16!124;CL:0002087!7.75e-16!119;CL:0000763!1.24e-15!112;CL:0000049!1.24e-15!112;CL:0000048!7.87e-15!430;CL:0000034!1.03e-14!444;CL:0000988!1.70e-14!182;CL:0000134!3.59e-14!358;CL:0000037!6.73e-14!172;CL:0000566!6.73e-14!172;CL:0000219!7.12e-14!390;CL:0000723!7.84e-14!436;CL:0002320!1.61e-13!365;CL:0002032!6.27e-12!165;CL:0000837!6.27e-12!165;CL:0002371!9.27e-10!591;CL:0000144!4.85e-09!625;CL:0002393!2.16e-07!9;CL:0002397!2.16e-07!9 | |||
|ontology_enrichment_celltype_v019=CL:0000860;1.44e-40;33!CL:0002057;1.44e-40;33!CL:0000576;2.41e-32;48!CL:0000473;3.45e-29;39!CL:0000234;3.45e-29;39!CL:0000766;7.98e-24;69!CL:0000763;2.93e-11;100!CL:0002087;6.17e-11;104!CL:0002393;8.14e-11;6!CL:0002397;8.14e-11;6!CL:0000738;1.69e-09;136!CL:0000988;9.31e-07;177 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,1.76e-58,42;CL:0002057,1.76e-58,42;CL:0000473,1.30e-51,48;CL:0000234,1.30e-51,48;CL:0000766,2.39e-51,72;CL:0000557,9.75e-51,67;CL:0002009,2.82e-47,61;CL:0000839,6.87e-45,66;CL:0000738,8.78e-45,136;CL:0002194,2.40e-44,59;CL:0000576,2.40e-44,59;CL:0000040,2.40e-44,59;CL:0000559,2.40e-44,59;CL:0000037,1.43e-35,168;CL:0000763,1.48e-35,108;CL:0000049,1.48e-35,108;CL:0002031,5.62e-35,120;CL:0000988,9.87e-35,177;CL:0002087,6.53e-34,115;CL:0002032,2.99e-30,161;CL:0000837,2.99e-30,161;CL:0000134,2.97e-21,354;CL:0000219,5.70e-21,386;CL:0002320,2.73e-20,361;CL:0000034,5.62e-18,441;CL:0000048,2.31e-17,427;CL:0000723,1.03e-16,433;CL:0002393,1.49e-14,9;CL:0002397,1.49e-14,9 | |||
|ontology_enrichment_development_v019=CL:0002057;2.57e-41;42!CL:0000049;2.86e-10;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002371!1.16e-30!80;UBERON:0001474!6.33e-28!86;UBERON:0002193!1.40e-26!112;UBERON:0002390!3.49e-26!102;UBERON:0003061!3.49e-26!102;UBERON:0004765!1.83e-21!101;UBERON:0001434!1.83e-21!101;UBERON:0002405!1.41e-19!115;UBERON:0003081!1.11e-18!216;UBERON:0002204!2.78e-15!167;UBERON:0002384!1.43e-12!375 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,1.62e-52,76;UBERON:0001474,2.58e-47,82;UBERON:0002390,2.41e-45,98;UBERON:0003061,2.41e-45,98;UBERON:0002405,1.37e-44,93;UBERON:0002193,2.95e-42,108;UBERON:0004765,1.82e-41,90;UBERON:0001434,1.73e-35,100;UBERON:0003081,2.23e-26,203;UBERON:0002204,1.39e-20,167;UBERON:0002384,1.31e-19,371;UBERON:0000926,6.49e-12,315;UBERON:0004120,6.49e-12,315;UBERON:0006603,6.49e-12,315 | |||
|phase1_expression=0.181678379270557,0.214100523890983,0,0,0.446961094427288,0,0,0,0,0.982935746006035,0,0,0,0,0,0,0,0,0.487932798790507,1.10808952269109,0.408001382488506,1.56727360739044,2.0036519099174,1.77936752594749,2.25976751270645,0,0,0,46.8103489450196,26.1003990706105,52.0182174342015,0,0,1.10926203050036,0.0774672005803016,0,10.5696158160545,28.8077612436576,17.6479113773725,34.7217393145363,0,0.647787332037959,0.257575567634187,2.76256653681173,2.26725566213286,5.57943340731977,4.18372266430232,3.70051099219643,4.33588919253145,3.45230870786581,2.30544635876191,6.62150243688039,5.5159308917859,5.16387746867061,8.12558919566051,4.51781614902251,2.45615535052061,6.06753408001728,6.42776173978895,2.24650318953266,7.67204550958849,1.64925650093358,1.99463657621632,3.83602275479425,5.5139755339431,4.53908179752912,1.86846674698672,5.02497330513487,3.65038042894141,8.25317609879443,2.42159801053347,2.20966581592539,6.0127853613768,5.49263744411049,6.80333759888139,7.75736988380991,2.80821577866238,5.10601435661121,3.69668849403284,4.27519115611873,1.9891667719909,4.01861138282195,0,0,0,0,0,0.574752439954483,0,0,0,0,0.764546456250458,15.8605594294831,6.72610275577843,1.58030450865046,3.73748563216283,8.25322601773246,9.86887195197644,0,0,0,0,0.222820913770347,0.589211814949674,0.443067789167242,0,0.25618263945135,0,0.164437904603676,0,0,1.63115219478266,0.802622484269139,0,0,4.59864592322305,3.77990190030893,1.26509846009751,0,0,0,0.752875595388864,0,1.24930726552346,0.236777252044017,0.821127996921047,14.5156855121807,14.4417705723094,9.99288386791313,0,0,0,0,0,0.289693037921647,0.795285947051099,0.486634870302636,0.945348171640679,0.221729397462564,0.527008714158756,0.392937226493138,0,0,0.324547393654683,0.348259474598534,0.26591592103773,1.66943437013739,2.85997455390064,1.48583000531826,1.59009925893364,3.4409383804245,0.694281003215189,2.82653970962005,0,0.550236083880135,1.8809546988313,0.258416759169329,1.06729878806013,0.33472061276467,0.402829317109147,0,0.488124115096339,0.367663080345869,0,0.17859945656816,0.673588117878509,0.337834441449967,7.66583187329416,0,0.183201743930407,5.27121669744253,11.6334079244498,0,0,0.12663051166458,0.529636723252875,0.860509862246441,0.354668382198357,0,0,0,0,0.269421344139376,0,0.454072282934794,0,0.70296429550139,0,1.71141546463335,0,0.469737994575059,0.647491777472526,0.421352420106746,0.816616685019573,0.737005903870608,0.619954687054593,0,0.494533858557114,1.82032272387605,0.718618141816238,0.673344455816265,0.375355559615893,0,0,0,0.300476117813194,0,1.97328599257748,0.213557388818567,0.211931901159562,1.50045548042201,0.309157587715317,1.28820270022815,0.558350568994769,0.843881661206331,0.389748020644795,1.00973509697646,0.184099797284599,0.323292113637624,1.77504796258307,0.10075209822764,0.339121184620975,0.386521706326594,0,0,0.243947412259191,0,0.232387885739037,0.414644220061482,0,0.36497735907583,0,1.28648187638577,2.76269842704961,0,0,0,0,0,0,0,0,0.134831308160164,0,0.769494313892781,0,0,0.4115740113314,0,0,0,0,0,0.491953754172454,0.171567810298526,0.109750285408626,0,0.100528972411631,0,1.3032332212413,1.03993478527958,0,0.927443239800615,0.117408694235822,0.433099343283221,0.462985512576611,0.190254152234598,0,0,0.246217006087397,0.468008530278475,0.445893486866185,0,0,0.141775097242386,0.179117045405697,0.290633938513962,0,0.492663237895943,0.352193736052904,10.7810620081201,11.9619561336078,14.2653949771809,0.126995788584338,0.763976851116555,0,1.71072446022705,0.205654985406647,0.600686115687835,0,0.448524337381443,0,0.1466765716419,0.129271715757778,7.15312891703765,0,0.797814349754612,1.04007436911366,0.771622122786426,1.41849132023278,0.799266537048298,0,0,0.823240336780769,0,0,0,0.301439377059586,0,0,1.2162378064119,0.502257091432126,0,0,0,0,0.289562613335158,0.205476322550383,0,0.112085143993527,13.595122453933,15.9564405396043,18.9947693694028,0,0,0,0.167516265334349,0,0,0,0,0,0,0.271265023699736,0,0,0.473107245101804,0,0,0,2.0694614258501,0,0.737476674166813,0.521301686808497,0.391602314925481,0.343143423810856,6.40980880980951,13.1585662499356,3.842192080924,0.303127571446259,0,0,0,0.61384789315225,0,0.256278298511402,0,0.160853921143607,0,0.308419387605311,0.177561725313127,0.574890092096664,0,0.232420756919918,0.120859449591622,0,0.184161977871793,0.114814448164607,0.364182336013434,0.262248829918848,0,0.15403067420883,0,1.46139224653261,0.105551628892876,0,0.510281115829547,0.215915916102139,0,0.270946437543853,1.50506932156456,0,0.831076008928724,0,0,0,0,0.328014645699706,0,0.206082023295445,0.27470839445503,0.495056999523528,0.574265537996172,0,1.6068392984416,0.096670718292122,0.616194468458578,0.767518373630648,0.275673144969061,0.214840489736547,0.435050081742686,0.596586391912706,0.178064071293475,0.165284915360978,0.192190067365106,0.382838137483752,0,0,0.31481234683064,0,0.308033580176089,0,0,0.37064843820784,0,0,0.949138274156178,0.571890581771475,0.255897791311334,0,0.636406495851874,2.35484592059769,0,0.274537029736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| ||
|short_description=p2@TRDMT1 | |||
}} | }} |
Latest revision as of 10:00, 17 September 2015
Short description: | p2@TRDMT1 |
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Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_TRDMT1_5end |
Coexpression cluster: | C82_Basophils_CD14_Eosinophils_Natural_Peripheral_immature_CD34 |
Association with transcript: | 27bp_to_ENST00000486947_5end |
EntrezGene: | TRDMT1 |
HGNC: | 2977 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 1.76e-58 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.76e-58 | 42 |
defensive cell | 1.30e-51 | 48 |
phagocyte | 1.30e-51 | 48 |
myeloid leukocyte | 2.39e-51 | 72 |
granulocyte monocyte progenitor cell | 9.75e-51 | 67 |
macrophage dendritic cell progenitor | 2.82e-47 | 61 |
myeloid lineage restricted progenitor cell | 6.87e-45 | 66 |
leukocyte | 8.78e-45 | 136 |
monopoietic cell | 2.40e-44 | 59 |
monocyte | 2.40e-44 | 59 |
monoblast | 2.40e-44 | 59 |
promonocyte | 2.40e-44 | 59 |
hematopoietic stem cell | 1.43e-35 | 168 |
myeloid cell | 1.48e-35 | 108 |
common myeloid progenitor | 1.48e-35 | 108 |
hematopoietic lineage restricted progenitor cell | 5.62e-35 | 120 |
hematopoietic cell | 9.87e-35 | 177 |
nongranular leukocyte | 6.53e-34 | 115 |
hematopoietic oligopotent progenitor cell | 2.99e-30 | 161 |
hematopoietic multipotent progenitor cell | 2.99e-30 | 161 |
mesenchymal cell | 2.97e-21 | 354 |
motile cell | 5.70e-21 | 386 |
connective tissue cell | 2.73e-20 | 361 |
stem cell | 5.62e-18 | 441 |
multi fate stem cell | 2.31e-17 | 427 |
somatic stem cell | 1.03e-16 | 433 |
intermediate monocyte | 1.49e-14 | 9 |
CD14-positive, CD16-positive monocyte | 1.49e-14 | 9 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 1.62e-52 | 76 |
bone element | 2.58e-47 | 82 |
hematopoietic system | 2.41e-45 | 98 |
blood island | 2.41e-45 | 98 |
immune system | 1.37e-44 | 93 |
hemolymphoid system | 2.95e-42 | 108 |
skeletal element | 1.82e-41 | 90 |
skeletal system | 1.73e-35 | 100 |
lateral plate mesoderm | 2.23e-26 | 203 |
musculoskeletal system | 1.39e-20 | 167 |
connective tissue | 1.31e-19 | 371 |
mesoderm | 6.49e-12 | 315 |
mesoderm-derived structure | 6.49e-12 | 315 |
presumptive mesoderm | 6.49e-12 | 315 |