FFCP PHASE1:Hg19::chr1:28520359..28520379,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=5724 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9582 | |||
|TSSclassifier=strong | |||
|UniProt=P25105 | |||
|association_with_transcript=4bp_to_ENST00000305392_5end | |||
|cluster_id=chr1:28520359..28520379,- | |||
|description=CAGE_peak_3_at_PTAFR_5end | |||
|id=chr1:28520359..28520379,- | |||
|ontology_enrichment_celltype=CL:0000066!4.03e-23!254;CL:0002076!6.08e-22!43;CL:0000223!1.09e-16!59;CL:0002368!8.81e-12!13;CL:0002159!2.33e-09!13;CL:0002251!2.54e-09!21;CL:0002202!6.81e-08!9;CL:0002632!6.81e-08!9 | |||
|ontology_enrichment_celltype_v019=CL:0002076;2.41e-20;42!CL:0002368;2.69e-15;13!CL:0002159;5.54e-11;14!CL:1000507;1.80e-09;10!CL:1000494;1.80e-09;10!CL:0002202;1.86e-09;9!CL:0002632;1.86e-09;9!CL:0002251;1.66e-08;20!CL:0000244;7.06e-08;4!CL:0000731;7.06e-08;4!CL:1000497;1.96e-07;17!CL:0002518;1.96e-07;17!CL:1000449;3.65e-07;15!CL:0002621;7.42e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,5.43e-29,253;CL:0002076,3.23e-26,42;CL:0000223,5.54e-18,58;CL:0002368,2.71e-15,13;CL:0002159,4.48e-11,14;CL:1000507,1.68e-09,10;CL:1000494,1.68e-09,10;CL:0002202,1.92e-09,9;CL:0002632,1.92e-09,9;CL:0002251,1.53e-08,20;CL:0000244,6.89e-08,4;CL:0000731,6.89e-08,4;CL:1000497,2.08e-07,17;CL:0002518,2.08e-07,17;CL:1000449,3.54e-07,15;CL:0002621,7.50e-07,3 | |||
|ontology_enrichment_development_v019=CL:0000223;1.74e-10;58 | |||
|ontology_enrichment_disease=DOID:305!3.72e-14!106;DOID:1749!1.36e-11!14;DOID:299!3.97e-08!25;DOID:0050687!4.80e-08!143 | |||
|ontology_enrichment_disease_v019=DOID:1749;1.86e-15;14!DOID:299;3.05e-07;25 | |||
|ontology_enrichment_disease_v019_2=DOID:1749,2.05e-15,14;DOID:305,1.92e-11,106;DOID:299,2.90e-07,25 | |||
|ontology_enrichment_uberon=UBERON:0004119!2.03e-20!169;UBERON:0000925!2.03e-20!169;UBERON:0006595!2.03e-20!169;UBERON:0001007!1.73e-16!155;UBERON:0001555!1.73e-16!155;UBERON:0007026!1.73e-16!155;UBERON:0004921!8.00e-14!129;UBERON:0004185!8.00e-14!129;UBERON:0000464!1.16e-13!104;UBERON:0001004!4.43e-13!72;UBERON:0000466!3.04e-12!126;UBERON:0000077!5.02e-12!130;UBERON:0000161!9.72e-12!35;UBERON:0001008!2.55e-11!45;UBERON:0005911!4.62e-11!82;UBERON:0006554!7.59e-11!44;UBERON:0005157!3.13e-10!51;UBERON:0000065!3.30e-09!53;UBERON:0005177!3.92e-09!107;UBERON:0005153!4.07e-09!37;UBERON:0001041!6.11e-09!98;UBERON:0005178!2.78e-08!34;UBERON:0002224!2.78e-08!34;UBERON:0003064!2.91e-08!37;UBERON:0007023!4.56e-08!115;UBERON:0000166!5.28e-08!21;UBERON:0003104!6.82e-08!238;UBERON:0009142!6.82e-08!238;UBERON:0005181!7.27e-08!35;UBERON:0009569!1.07e-07!113;UBERON:0000062!2.57e-07!511;UBERON:0002553!5.39e-07!70;UBERON:0007196!6.27e-07!14;UBERON:0001558!6.27e-07!14;UBERON:0003103!8.07e-07!69;UBERON:0000481!8.41e-07!347;UBERON:0000468!9.04e-07!659 | |||
|ontology_enrichment_uberon_v019=UBERON:0006554;5.08e-13;30!UBERON:0001008;5.08e-13;30!UBERON:0004211;1.80e-09;10!UBERON:0009773;1.80e-09;10!UBERON:0001231;1.80e-09;10!UBERON:0004810;1.80e-09;10!UBERON:0000365;3.55e-09;5!UBERON:0000486;6.18e-09;12!UBERON:0000344;1.24e-08;20!UBERON:0007196;2.57e-08;15!UBERON:0001558;2.57e-08;15!UBERON:0002294;3.95e-08;7!UBERON:0001173;3.95e-08;7!UBERON:0005178;6.34e-08;34!UBERON:0002224;6.34e-08;34!UBERON:0005910;1.53e-07;6!UBERON:0005181;1.76e-07;35!UBERON:0005911;2.02e-07;36!UBERON:0000489;2.45e-07;29!UBERON:0006555;3.65e-07;15!UBERON:0004819;3.65e-07;15!UBERON:0001285;3.65e-07;15!UBERON:0007684;3.65e-07;15!UBERON:0001949;7.42e-07;3!UBERON:0002113;7.73e-07;24!UBERON:0011143;7.73e-07;24 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004119,6.14e-15,160;UBERON:0000925,6.14e-15,160;UBERON:0006595,6.14e-15,160;UBERON:0001004,3.71e-11,74;UBERON:0001007,8.61e-11,145;UBERON:0001555,8.61e-11,145;UBERON:0007026,8.61e-11,145;UBERON:0005177,8.42e-10,101;UBERON:0006554,1.04e-09,47;UBERON:0004810,1.68e-09,10;UBERON:0001008,2.16e-09,48;UBERON:0003103,2.30e-09,68;UBERON:0000365,3.53e-09,5;UBERON:0000065,4.04e-09,54;UBERON:0005178,1.06e-08,34;UBERON:0002224,1.06e-08,34;UBERON:0005157,1.14e-08,47;UBERON:0000344,1.15e-08,20;UBERON:0005181,2.46e-08,35;UBERON:0007196,2.60e-08,15;UBERON:0001558,2.60e-08,15;UBERON:0004921,4.44e-08,118;UBERON:0000161,5.96e-08,36;UBERON:0005911,1.18e-07,82;UBERON:0005910,1.53e-07,6;UBERON:0004211,3.54e-07,15;UBERON:0009773,3.54e-07,15;UBERON:0001231,3.54e-07,15;UBERON:0001285,3.54e-07,15;UBERON:0007684,3.54e-07,15;UBERON:0004208,3.54e-07,15;UBERON:0000166,4.43e-07,22;UBERON:0001949,7.50e-07,3 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0.261185628199839,0.737201809504527,1.39560233594486,0,0.263766978228454,0,0,0,0,0,0,0,0,0,0,0,0,0.0764134057479513,0.0821005894499457,0.0787107813136792,0,0,0,20.2272669385364,25.9037090149295,11.0926203050036,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.28769239232215,0.256160706529101,0,0,0,0,0,0,0,0,0,0,0.329851300186716,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.24430121722827,49.1798639194932,48.2019775619758,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,13.5189156164186,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.570471821544449,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,25.5104326175552,30.2748193855826,43.0206893083506,2.07355300420312,1.85541675650079,1.04574548582567,2.07322110030741,0.504641701751257,2.55484151353081,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.81264159483652,0,24.6938142169408,6.74410519545717,11.3597738825143,18.702865922023,0,0,0,0,0,0,0,0,0.790204397959275,0.858486162094873,0,0,0,1.87467667973554,10.2469098201304,8.50650583454319,4.11969204433102,12.2066254175864,1.91691339582606,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112085143993527,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.90062679019893,17.0430499757792,9.30017988252553,0,0,0.262248829918848,11.2799903226853,9.54990180094743,2.35304930753057,1.46139224653261,1.47772280450026,0,0,0,0,0.270946437543853,0,27.5266374888641,44.8781044821511,4.70136984916574,0,0,0,0,0,0.412164046590889,0,0,11.4853107599234,24.0522291033513,0,0,0,0,0,0,0,0,0,14.875642382488,21.5252875448919,15.6963636368338,10.115778085555,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.243713489631284,0,0,0,0,0,0,0,0,0,0,0.30982349809975,0,0,0,0,0,0,0,0,0,23.2857512795739,10.0545341330368,16.3336477291984,0.564862804660675,19.3727417702053,10.1082885400575,23.9452282909805,16.999531615315,0,0,0,0,0,0,0,0,0.213648142254946,0,12.0069705830706,0,0,0,0,0,0,0,0,0,0,0,0,0.169291777801603,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.17206543417515,0,0,0,0,0,0,0,0,0,0,0,2.19172787076177,1.93398740871803,0,0,0,0,5.21236436654496,14.6797363234,0,2.86065876347107,0,0,0,0.0927680981618513,0,1.82299432759663,0,0.724999575434793,16.0448762082555,16.272233618737,0,0,0,0,0,0,0,0,0,0,0,30.5337999970141,2.6932590476329,0,0.46112780877612,0.179515288819544,0,0.31900115973192,0.183195186803725,0.533034776018635,0,0,0,0,0,0,0,0,16.0358529041301,7.5087091753208,0,0,0,0.796118080530053,1.83309043480088,0,0,0,0,0,0,0,15.0661756577709,0,0.789168805698781,0,0,0.252746318513952,0,0,0,0,0.313932918407225,0,17.0765727617876,0,40.6129787704206,36.2571870433197,8.44474303829905,0.52418000472609,0,0,0,0,8.05008836853881,0,2.93774963014692,0,0,0,9.58201775400535,9.69921725043558,3.62870091056899,1.39866726707491,0.288180834308212,0,0,0,0,9.19206735005502,0,0,0,0,0,0.136905378891993,0,0,0,1.39641200636127,2.06244381610515,4.30723814746088,0.599037001496973,1.28767814440971,1.33902874465124,0.0671834724867263,0,0,0.551482276150566,0.824158583811665,0.741438982396034,0,0.0846733320657845,0,0.136203406111576,2.08979093004525,2.88832816854191,2.9080823662043,0,1.5476039091159,0,13.4173875039706,2.20655980437755,3.46200281690987,0,0,1.53532157855556,0.714695326373367,0,0,0,0,0,0,0,0,0,0,0,0.129282956361551,0,0,23.9637107587668,1.17466153824464,0.157204305099666,1.65695622138878,0.992332043623902,0,0,24.2569677952669,0,0.2506898940227,0,0,0.157054096250234,0,0,0,0,0.332787154610557,0.0620964029413835,0,4.12435346274952,0,0,0.470531639396343,0,0.579684114443301,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.428883182749851,0,0,0,0,0,1.85280868296583,0,0,0.771656153083659,0,0,0,0,0.138258436151731,0,0,0,0,0.245772908753719,24.5122063096007,0,0,0,0,0,5.87493932421667,5.59869534029676,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0691572524642179,0,0,14.4277146196508,0.235939446695481,26.5971467856435,1.84841065840541,0,0,0,0.601682626794058,0,0.781514011233092,0,0,4.13997041407727,0.0675375846183947,0,0,0,0,0.548257766857182,1.98484471355718,0,22.6139496922084,1.07140367175657,0.336283722218824,0,0,0.266107110487916,0,0,0,0,0.945550727071746,0.556157009460346,0.78493092850514,0,1.12108865325516,0,1.07963795609311,0,0,0.316027223465453,0.116241425368125,0,0,0.62164849248911,0.3414369541879,0,1.29068207646083,0,0,0,11.2262365586585,0,0,4.92163899910286,0.196300467230486,12.4356283481915,0,0.307988420568741,0,0.485710993059139,0,0.397901550322736,0,0.11294608203896,0.439762066981716,0,0.463044948647668,0.218559560503957,0.470317296361523,0.490296643507811,0.235676547101626,0,0,0,0,0.375935671919414,1.09578409555081,0,8.03492723725459,35.9952769150006,1.04313776695919,0.730336388246517,1.83491713361816,0,0,0,0,0.5290268405154,0,0,0,0,0.109265571963696,0,4.58949733838918,25.3856535002282,6.70832766604368,0,0.985123076837112,0,0,0,3.62497769231668,0.23806443146374,0.32294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| |||
|short_description=p3@PTAFR | |||
}} |
Latest revision as of 10:02, 17 September 2015
Short description: | p3@PTAFR |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_PTAFR_5end |
Coexpression cluster: | NA |
Association with transcript: | 4bp_to_ENST00000305392_5end |
EntrezGene: | PTAFR |
HGNC: | 9582 |
UniProt: | P25105 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 5.43e-29 | 253 |
endo-epithelial cell | 3.23e-26 | 42 |
endodermal cell | 5.54e-18 | 58 |
respiratory epithelial cell | 2.71e-15 | 13 |
general ecto-epithelial cell | 4.48e-11 | 14 |
kidney tubule cell | 1.68e-09 | 10 |
nephron tubule epithelial cell | 1.68e-09 | 10 |
epithelial cell of tracheobronchial tree | 1.92e-09 | 9 |
epithelial cell of lower respiratory tract | 1.92e-09 | 9 |
epithelial cell of alimentary canal | 1.53e-08 | 20 |
transitional epithelial cell | 6.89e-08 | 4 |
urothelial cell | 6.89e-08 | 4 |
kidney cell | 2.08e-07 | 17 |
kidney epithelial cell | 2.08e-07 | 17 |
epithelial cell of nephron | 3.54e-07 | 15 |
gingival epithelial cell | 7.50e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
endoderm-derived structure | 6.14e-15 | 160 |
endoderm | 6.14e-15 | 160 |
presumptive endoderm | 6.14e-15 | 160 |
respiratory system | 3.71e-11 | 74 |
digestive system | 8.61e-11 | 145 |
digestive tract | 8.61e-11 | 145 |
primitive gut | 8.61e-11 | 145 |
trunk region element | 8.42e-10 | 101 |
urinary system structure | 1.04e-09 | 47 |
nephron tubule epithelium | 1.68e-09 | 10 |
renal system | 2.16e-09 | 48 |
compound organ | 2.30e-09 | 68 |
urothelium | 3.53e-09 | 5 |
respiratory tract | 4.04e-09 | 54 |
thoracic cavity element | 1.06e-08 | 34 |
thoracic cavity | 1.06e-08 | 34 |
epithelial fold | 1.14e-08 | 47 |
mucosa | 1.15e-08 | 20 |
thoracic segment organ | 2.46e-08 | 35 |
tracheobronchial tree | 2.60e-08 | 15 |
lower respiratory tract | 2.60e-08 | 15 |
subdivision of digestive tract | 4.44e-08 | 118 |
orifice | 5.96e-08 | 36 |
endo-epithelium | 1.18e-07 | 82 |
transitional epithelium | 1.53e-07 | 6 |
nephron epithelium | 3.54e-07 | 15 |
renal tubule | 3.54e-07 | 15 |
nephron tubule | 3.54e-07 | 15 |
nephron | 3.54e-07 | 15 |
uriniferous tubule | 3.54e-07 | 15 |
nephrogenic mesenchyme | 3.54e-07 | 15 |
oral opening | 4.43e-07 | 22 |
gingival epithelium | 7.50e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
squamous cell carcinoma | 2.05e-15 | 14 |
carcinoma | 1.92e-11 | 106 |
adenocarcinoma | 2.90e-07 | 25 |