FFCP PHASE1:Hg19::chr1:154941364..154941368,-: Difference between revisions
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m (moved FFCP PHASE1 hg19::chr1:154941364..154941368,- to FFCP PHASE1:Hg19::chr1:154941364..154941368,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=6464 | |EntrezGene=6464 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10840 | |HGNC=10840 | ||
|TSSclassifier=strong | |||
|UniProt=Q5T188 | |UniProt=Q5T188 | ||
|association_with_transcript=0bp_to_ENST00000414115_5end | |||
|cluster_id=chr1:154941364..154941368,- | |||
|coexpression_cluster_id=C38 | |||
|description=CAGE_peak_29_at_SHC1_5end | |||
|id=chr1:154941364..154941368,- | |||
|ontology_enrichment_celltype=CL:0000242!2.29e-13!2;CL:0000039!8.26e-08!7;CL:0000586!8.26e-08!7 | |||
|ontology_enrichment_celltype_v019=CL:0000123;2.86e-79;2!CL:0000242;2.86e-79;2!CL:0000312;1.57e-32;5!CL:0000240;2.54e-27;6!CL:0000311;2.54e-27;6!CL:0000079;2.54e-27;6!CL:0000237;2.54e-27;6!CL:0000362;1.29e-18;9!CL:0002159;2.31e-12;14!CL:0000095;2.21e-09;17!CL:0000333;2.97e-09;5!CL:0000138;5.92e-08;6!CL:0002319;6.92e-07;25 | |||
|ontology_enrichment_celltype_v019_2=CL:0000242,2.34e-79,2;CL:0000312,1.44e-32,5;CL:0000240,2.38e-27,6;CL:0000311,2.38e-27,6;CL:0000079,2.38e-27,6;CL:0000237,2.38e-27,6;CL:0000036,2.38e-27,6;CL:0000357,2.38e-27,6;CL:0000114,2.38e-27,6;CL:0000362,1.24e-18,9;CL:0002159,2.24e-12,14;CL:0000095,2.17e-09,17;CL:0000123,2.17e-09,17;CL:0000333,4.09e-09,41;CL:0000058,5.92e-08,6;CL:0000138,5.92e-08,6;CL:0002319,6.82e-07,25 | |||
|ontology_enrichment_development_v019=CL:0000357;2.54e-27;6!CL:0000114;2.54e-27;6 | |||
|ontology_enrichment_disease=DOID:169!2.96e-09!6;DOID:3095!7.87e-09!22;DOID:2994!7.87e-09!22;DOID:0050687!4.00e-08!143;DOID:3371!1.55e-07!1;DOID:4549!1.55e-07!1;DOID:5861!1.55e-07!1;DOID:6496!1.55e-07!1;DOID:1115!4.69e-07!20 | |||
|ontology_enrichment_disease_v019=DOID:3371;9.91e-41;1!DOID:4549;9.91e-41;1!DOID:5861;9.91e-41;1!DOID:6496;9.91e-41;1!DOID:201;5.92e-08;6!DOID:0060100;5.92e-08;6!DOID:169;6.34e-08;6 | |||
|ontology_enrichment_disease_v019_2=DOID:3371,9.91e-41,1;DOID:4549,9.91e-41,1;DOID:5861,9.91e-41,1;DOID:6496,9.91e-41,1;DOID:201,5.92e-08,6;DOID:0060100,5.92e-08,6;DOID:169,6.34e-08,6 | |||
|ontology_enrichment_uberon=UBERON:0001905!5.96e-13!2;UBERON:0002757!5.96e-13!2;UBERON:0010134!5.96e-13!2;UBERON:0002784!5.96e-13!2;UBERON:0005408!5.96e-13!2;UBERON:0001899!5.96e-13!2;UBERON:0000013!5.18e-11!5;UBERON:0002410!5.18e-11!5;UBERON:0000029!2.84e-07!1;UBERON:0003296!6.90e-07!4;UBERON:0010133!6.90e-07!4;UBERON:0000473!6.91e-07!8 | |||
|ontology_enrichment_uberon_v019=UBERON:0001905;6.30e-21;2!UBERON:0002757;6.30e-21;2!UBERON:0010134;6.30e-21;2!UBERON:0005408;6.30e-21;2!UBERON:0001899;6.30e-21;2!UBERON:0002418;1.40e-14;3!UBERON:0004755;1.40e-14;3!UBERON:0001003;1.31e-11;15!UBERON:0007376;1.31e-11;15!UBERON:0003296;3.60e-11;4!UBERON:0010133;3.60e-11;4!UBERON:0002784;3.60e-11;4!UBERON:0000013;2.97e-09;5!UBERON:0002410;2.97e-09;5!UBERON:0001894;6.21e-07;7 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001905,6.96e-21,2;UBERON:0002757,6.96e-21,2;UBERON:0010134,6.96e-21,2;UBERON:0005408,6.96e-21,2;UBERON:0001899,6.96e-21,2;UBERON:0002418,1.40e-14,3;UBERON:0004755,1.40e-14,3;UBERON:0001003,1.27e-11,15;UBERON:0007376,1.27e-11,15;UBERON:0007383,1.27e-11,15;UBERON:0003296,3.79e-11,4;UBERON:0010133,3.79e-11,4;UBERON:0002784,3.79e-11,4;UBERON:0000013,2.97e-09,5;UBERON:0002410,2.97e-09,5;UBERON:0001894,6.39e-07,7;UBERON:0006222,6.39e-07,7 | |||
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|short_description=p29@SHC1 | |||
}} | }} |
Latest revision as of 10:39, 17 September 2015
Short description: | p29@SHC1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_29_at_SHC1_5end |
Coexpression cluster: | C38_extraskeletal_rhabdomyosarcoma_adrenal_rectal_mesothelioma_lung_Wilms |
Association with transcript: | 0bp_to_ENST00000414115_5end |
EntrezGene: | SHC1 |
HGNC: | 10840 |
UniProt: | Q5T188 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
Merkel cell | 2.34e-79 | 2 |
keratinocyte | 1.44e-32 | 5 |
stratified squamous epithelial cell | 2.38e-27 | 6 |
keratin accumulating cell | 2.38e-27 | 6 |
stratified epithelial cell | 2.38e-27 | 6 |
keratinizing barrier epithelial cell | 2.38e-27 | 6 |
epithelial fate stem cell | 2.38e-27 | 6 |
stratified epithelial stem cell | 2.38e-27 | 6 |
surface ectodermal cell | 2.38e-27 | 6 |
epidermal cell | 1.24e-18 | 9 |
general ecto-epithelial cell | 2.24e-12 | 14 |
neuron associated cell | 2.17e-09 | 17 |
neuron associated cell (sensu Vertebrata) | 2.17e-09 | 17 |
migratory neural crest cell | 4.09e-09 | 41 |
chondroblast | 5.92e-08 | 6 |
chondrocyte | 5.92e-08 | 6 |
neural cell | 6.82e-07 | 25 |
Ontology term | p-value | n |
---|---|---|
pineal body | 6.96e-21 | 2 |
regional part of epithalamus | 6.96e-21 | 2 |
secretory circumventricular organ | 6.96e-21 | 2 |
circumventricular organ | 6.96e-21 | 2 |
epithalamus | 6.96e-21 | 2 |
cartilage tissue | 1.40e-14 | 3 |
skeletal tissue | 1.40e-14 | 3 |
skin epidermis | 1.27e-11 | 15 |
outer epithelium | 1.27e-11 | 15 |
enveloping layer of ectoderm | 1.27e-11 | 15 |
gland of diencephalon | 3.79e-11 | 4 |
neuroendocrine gland | 3.79e-11 | 4 |
regional part of diencephalon | 3.79e-11 | 4 |
sympathetic nervous system | 2.97e-09 | 5 |
autonomic nervous system | 2.97e-09 | 5 |
diencephalon | 6.39e-07 | 7 |
future diencephalon | 6.39e-07 | 7 |
Ontology term | p-value | n |
---|---|---|
chondrosarcoma | 9.91e-41 | 1 |
extraosseous chondrosarcoma | 9.91e-41 | 1 |
myxoid chondrosarcoma | 9.91e-41 | 1 |
extraskeletal myxoid chondrosarcoma | 9.91e-41 | 1 |
connective tissue cancer | 5.92e-08 | 6 |
musculoskeletal system cancer | 5.92e-08 | 6 |
neuroendocrine tumor | 6.34e-08 | 6 |