FFCP PHASE1:Hg19::chr3:193853927..193853944,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3280 | |EntrezGene=3280 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=5192 | |HGNC=5192 | ||
|TSSclassifier=strong | |||
|UniProt=Q14469 | |UniProt=Q14469 | ||
|association_with_transcript=0bp_to_ENST00000232424,ENST00000476918,NM_005524,uc003ftq.1,uc011bst.1_5end | |association_with_transcript=0bp_to_ENST00000232424,ENST00000476918,NM_005524,uc003ftq.1,uc011bst.1_5end | ||
|cluster_id=chr3:193853927..193853944,+ | |||
|description=CAGE_peak_1_at_HES1_5end | |description=CAGE_peak_1_at_HES1_5end | ||
|id=chr3:193853927..193853944,+ | |id=chr3:193853927..193853944,+ | ||
|ontology_enrichment_celltype=CL:0000066!4.46e-23!254;CL:0000223!3.30e-14!59;CL:0002076!2.05e-10!43;CL:0002057!1.15e-07!42;CL:0000860!3.56e-07!45 | |ontology_enrichment_celltype=CL:0000066!4.46e-23!254;CL:0000223!3.30e-14!59;CL:0002076!2.05e-10!43;CL:0002057!1.15e-07!42;CL:0000860!3.56e-07!45 | ||
|ontology_enrichment_celltype_v019=CL:0000860;4.07e-10;33!CL:0002057;4.07e-10;33!CL:0002076;8.36e-09;42 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,1.25e-23,253;CL:0000223,4.66e-15,58;CL:0002076,3.01e-11,42;CL:0000860,1.17e-07,42;CL:0002057,1.17e-07,42 | |||
|ontology_enrichment_development_v019=CL:0000223;2.75e-08;58!UBERON:0003104;8.41e-07;31 | |||
|ontology_enrichment_disease=DOID:305!5.69e-14!106;DOID:0050687!1.86e-13!143;DOID:1749!4.65e-08!14 | |ontology_enrichment_disease=DOID:305!5.69e-14!106;DOID:0050687!1.86e-13!143;DOID:1749!4.65e-08!14 | ||
|ontology_enrichment_disease_v019=DOID:1749;4.52e-08;14 | |||
|ontology_enrichment_disease_v019_2=DOID:305,5.85e-14,106;DOID:0050687,1.77e-13,143;DOID:1749,4.56e-08,14 | |||
|ontology_enrichment_uberon=UBERON:0000468!1.42e-11!659;UBERON:0000922!3.13e-11!612;UBERON:0000062!8.36e-11!511;UBERON:0000466!2.32e-10!126;UBERON:0002050!4.57e-10!605;UBERON:0005423!4.57e-10!605;UBERON:0000923!7.21e-10!604;UBERON:0005291!7.21e-10!604;UBERON:0006598!7.21e-10!604;UBERON:0002532!7.21e-10!604;UBERON:0000467!1.98e-09!625;UBERON:0000480!3.20e-09!626;UBERON:0001048!9.61e-09!168;UBERON:0005177!1.58e-08!107;UBERON:0004921!2.97e-08!129;UBERON:0004185!2.97e-08!129;UBERON:0004119!7.94e-08!169;UBERON:0000925!7.94e-08!169;UBERON:0006595!7.94e-08!169;UBERON:0005911!1.22e-07!82;UBERON:0001007!3.33e-07!155;UBERON:0001555!3.33e-07!155;UBERON:0007026!3.33e-07!155;UBERON:0001041!6.48e-07!98;UBERON:0005172!7.97e-07!55;UBERON:0005173!7.97e-07!55;UBERON:0000464!9.14e-07!104 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000922,1.41e-11,592;UBERON:0005423,5.52e-10,581;UBERON:0005177,1.73e-09,101;UBERON:0004921,2.95e-08,118;UBERON:0002050,4.19e-08,564;UBERON:0001048,7.35e-08,160;UBERON:0000923,1.05e-07,560;UBERON:0010316,1.05e-07,560;UBERON:0005291,1.05e-07,560;UBERON:0006598,1.05e-07,560;UBERON:0010317,1.05e-07,560;UBERON:0002532,1.05e-07,560;UBERON:0004119,1.10e-07,160;UBERON:0000925,1.10e-07,160;UBERON:0006595,1.10e-07,160;UBERON:0005911,1.11e-07,82;UBERON:0005172,1.95e-07,54;UBERON:0005173,1.95e-07,54;UBERON:0001007,2.19e-07,145;UBERON:0001555,2.19e-07,145;UBERON:0007026,2.19e-07,145;UBERON:0009569,4.59e-07,112;UBERON:0001041,5.64e-07,87 | |||
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| ||
|short_description=p1@HES1 | |short_description=p1@HES1 | ||
}} | }} |
Latest revision as of 12:08, 17 September 2015
Short description: | p1@HES1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_HES1_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000232424, ENST00000476918, NM_005524, uc003ftq.1, uc011bst.1_5end |
EntrezGene: | HES1 |
HGNC: | 5192 |
UniProt: | Q14469 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 1.25e-23 | 253 |
endodermal cell | 4.66e-15 | 58 |
endo-epithelial cell | 3.01e-11 | 42 |
classical monocyte | 1.17e-07 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.17e-07 | 42 |
Ontology term | p-value | n |
---|---|---|
embryo | 1.41e-11 | 592 |
developing anatomical structure | 5.52e-10 | 581 |
trunk region element | 1.73e-09 | 101 |
subdivision of digestive tract | 2.95e-08 | 118 |
embryonic structure | 4.19e-08 | 564 |
primordium | 7.35e-08 | 160 |
germ layer | 1.05e-07 | 560 |
germ layer / neural crest | 1.05e-07 | 560 |
embryonic tissue | 1.05e-07 | 560 |
presumptive structure | 1.05e-07 | 560 |
germ layer / neural crest derived structure | 1.05e-07 | 560 |
epiblast (generic) | 1.05e-07 | 560 |
endoderm-derived structure | 1.10e-07 | 160 |
endoderm | 1.10e-07 | 160 |
presumptive endoderm | 1.10e-07 | 160 |
endo-epithelium | 1.11e-07 | 82 |
abdomen element | 1.95e-07 | 54 |
abdominal segment element | 1.95e-07 | 54 |
digestive system | 2.19e-07 | 145 |
digestive tract | 2.19e-07 | 145 |
primitive gut | 2.19e-07 | 145 |
subdivision of trunk | 4.59e-07 | 112 |
foregut | 5.64e-07 | 87 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 5.85e-14 | 106 |
cell type cancer | 1.77e-13 | 143 |
squamous cell carcinoma | 4.56e-08 | 14 |