FFCP PHASE1:Hg19::chr1:31882617..31882630,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(9 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=347735 | |EntrezGene=347735 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=23231 | |HGNC=23231 | ||
|TSSclassifier=strong | |||
|UniProt=E7EUZ9,Q96IM8,Q96SA4 | |UniProt=E7EUZ9,Q96IM8,Q96SA4 | ||
|association_with_transcript=205bp_to_ENST00000373710,NM_001199038_5end | |association_with_transcript=205bp_to_ENST00000373710,NM_001199038_5end | ||
|cluster_id=chr1:31882617..31882630,+ | |||
|coexpression_cluster_id=C108 | |||
|description=CAGE_peak_4_at_SERINC2_5end | |description=CAGE_peak_4_at_SERINC2_5end | ||
|id=chr1:31882617..31882630,+ | |id=chr1:31882617..31882630,+ | ||
|ontology_enrichment_celltype=CL:0000055!2.28e-18!180;CL:0000057!6.43e-12!75;CL:0000680!1.06e-10!57;CL:0000056!1.06e-10!57;CL:0000355!1.06e-10!57;CL:0000183!2.49e-09!59;CL:0000187!4.01e-09!54;CL:0000393!3.57e-08!60;CL:0000211!3.57e-08!60;CL:0002556!1.85e-07!6;CL:0002371!3.20e-07!591;CL:0000144!5.26e-07!625 | |ontology_enrichment_celltype=CL:0000055!2.28e-18!180;CL:0000057!6.43e-12!75;CL:0000680!1.06e-10!57;CL:0000056!1.06e-10!57;CL:0000355!1.06e-10!57;CL:0000183!2.49e-09!59;CL:0000187!4.01e-09!54;CL:0000393!3.57e-08!60;CL:0000211!3.57e-08!60;CL:0002556!1.85e-07!6;CL:0002371!3.20e-07!591;CL:0000144!5.26e-07!625 | ||
|ontology_enrichment_celltype_v019=CL:0002552;1.05e-13;5!CL:0002367;9.32e-10;2!CL:0002561;3.60e-09;2!CL:0002559;7.64e-08;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0002552,1.39e-13,5;CL:0002367,1.09e-09,2;CL:0002561,2.14e-09,2;CL:0002559,5.74e-08,5;CL:0000192,1.01e-07,43;CL:0000514,1.01e-07,43;CL:0000680,1.19e-07,58;CL:0000056,1.19e-07,58;CL:0000355,1.19e-07,58;CL:0000187,7.20e-07,55 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003102!2.00e-17!95;UBERON:0000914!1.06e-15!83;UBERON:0002329!1.06e-15!83;UBERON:0003077!1.06e-15!83;UBERON:0003059!1.06e-15!83;UBERON:0007282!1.06e-15!83;UBERON:0009618!1.06e-15!83;UBERON:0007285!1.06e-15!83;UBERON:0001444!3.96e-15!48;UBERON:0000486!1.05e-13!82;UBERON:0000475!4.92e-12!365;UBERON:0004290!3.21e-11!70;UBERON:0000165!4.70e-11!28;UBERON:0000930!4.70e-11!28;UBERON:0002385!1.65e-09!63;UBERON:0001015!1.65e-09!63;UBERON:0000383!1.65e-09!63;UBERON:0001134!2.00e-09!61;UBERON:0002036!2.00e-09!61;UBERON:0003082!2.00e-09!61;UBERON:0000161!1.95e-08!35;UBERON:0005256!2.60e-08!143;UBERON:0001758!1.85e-07!6;UBERON:0003672!1.85e-07!6 | |ontology_enrichment_uberon=UBERON:0003102!2.00e-17!95;UBERON:0000914!1.06e-15!83;UBERON:0002329!1.06e-15!83;UBERON:0003077!1.06e-15!83;UBERON:0003059!1.06e-15!83;UBERON:0007282!1.06e-15!83;UBERON:0009618!1.06e-15!83;UBERON:0007285!1.06e-15!83;UBERON:0001444!3.96e-15!48;UBERON:0000486!1.05e-13!82;UBERON:0000475!4.92e-12!365;UBERON:0004290!3.21e-11!70;UBERON:0000165!4.70e-11!28;UBERON:0000930!4.70e-11!28;UBERON:0002385!1.65e-09!63;UBERON:0001015!1.65e-09!63;UBERON:0000383!1.65e-09!63;UBERON:0001134!2.00e-09!61;UBERON:0002036!2.00e-09!61;UBERON:0003082!2.00e-09!61;UBERON:0000161!1.95e-08!35;UBERON:0005256!2.60e-08!143;UBERON:0001758!1.85e-07!6;UBERON:0003672!1.85e-07!6 | ||
|ontology_enrichment_uberon_v019=UBERON:0005969;9.32e-10;2!UBERON:0003956;9.32e-10;2!UBERON:0005933;3.60e-09;2!UBERON:0005942;3.60e-09;2!UBERON:0005932;3.60e-09;2!UBERON:0001828;1.37e-08;8!UBERON:0002073;7.64e-08;5!UBERON:0001444;1.68e-07;48!UBERON:0000033;1.85e-07;50 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001444,8.62e-10,49;UBERON:0005969,1.09e-09,2;UBERON:0003956,1.09e-09,2;UBERON:0002329,1.52e-09,71;UBERON:0003059,1.52e-09,71;UBERON:0007282,1.52e-09,71;UBERON:0004290,1.52e-09,71;UBERON:0009618,1.52e-09,71;UBERON:0005085,1.91e-09,31;UBERON:0005933,2.14e-09,2;UBERON:0005942,2.14e-09,2;UBERON:0005932,2.14e-09,2;UBERON:0003077,2.29e-09,72;UBERON:0007285,2.29e-09,72;UBERON:0003102,2.29e-09,99;UBERON:0007524,3.41e-09,73;UBERON:0000486,6.41e-09,83;UBERON:0001828,1.62e-08,8;UBERON:0007503,2.12e-08,78;UBERON:0000033,2.92e-08,56;UBERON:0002073,5.74e-08,5;UBERON:0005086,5.74e-08,5;UBERON:0000153,3.14e-07,62;UBERON:0007811,3.14e-07,62;UBERON:0001134,5.24e-07,62;UBERON:0002036,5.24e-07,62;UBERON:0003082,5.24e-07,62 | |||
|phase1_expression=0.363356758541113,0,0.704772020479856,0,0,0,7.59899634504932,0.631719873426831,0,0.245733936501509,0,0,0,0.247532705920093,0,0,0.602694528023977,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.272906150057846,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.283604451492204,0.665188192387692,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.993943903390637,0,0.132409180813219,0,0,0,0,0,0,0,0,0,0,0,7.80400192075801,1.1409436430889,0.149448680551801,0,0,0.280901613404497,4.69554593886255,7.73856199064138,1.23990937410919,1.18800285728205,0,0.910161361938026,5.03032699271367,0.673344455816265,0.500474079487857,7.20366700258876,0.877955241761676,1.5324389789951,0.150238058906597,0,0,0,0,0.600182192168805,0,0.257640540045629,0,0.337552664482532,0.0974370051611986,0,0.184099797284599,0,0.355009592516614,0,0.169560592310488,0,0.272746120590835,0.286804595389004,0.243947412259191,0.132529768321485,0.348581828608555,4.35376431064556,0.756962552626885,0,0,0,1.38134921352481,1.85747171212792,2.88751792667834,0.118306800039844,0,0.241011029883482,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.857839051492628,0.109750285408626,0,0,0.185176890317059,0,7.27954349695705,2.88662684050547,0.231860809950154,0,0,0,0,0,0,0,0,0,0,0,0.992425680696705,0,0,0,0,0,0,0,0,0,0,0,0,0.102827492703324,0,0,0,0,0,0.129271715757778,3.57656445851882,0,0.26593811658487,0,10.5455023447478,0,4.79559922228979,0.285955987316295,0.542621605391443,0,0,0.355391948742546,0,0,0,0,0,0,0,0,0,1.42636905040718,0.144781306667579,1.02738161275192,0.179060963239896,0.112085143993527,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.356857977594324,0.315404830067869,0,0,0,0,0,0,0.0868836144680828,0.195801157462741,1.37257369524342,0,0,0,0,0,0,0,0.153461973288062,0,0.384417447767103,0.511707249066704,0.64341568457443,0,1.3878872442239,0.355123450626254,0.328508624055237,1.55776328755086,0.232420756919918,0,0.200506470303285,0,0.459257792658427,1.0925470080403,0.393373244878272,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.261435451024901,1.02580050046556,0.328014645699706,0,0.515205058238611,0,0.082509499920588,0,0,0,0,0.154048617114644,0.15350367472613,0.413509717453592,0.214840489736547,0.145016693914229,0.340906509664404,0.712256285173899,0,0,0,0,0,0.31481234683064,0,0,0,0,1.48259375283136,0,0.744316738719335,0,2.85945290885737,2.303080121802,0,0,0,5.21630126991613,0.54907405947211,1.7671860351853,0,3.17020642346017,0,1.95053495635836,0,0,0.272999822815972,1.55545975149084,0,0,0.66343897524122,1.31535265576129,1.73632660280006,0.655894752046633,0,0,0,0,0.196498082026242,0,0.354761064070598,0,0,2.27683904259429,7.34862912514464,0,0,0,0.282431402330337,0.43050537267123,1.68471475667626,0.443430153536676,0.229723400206959,0,0,0,0,0,0,0,0,2.35012956480441,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.334330152832435,3.69376990848337,0,0,0,0,0,0,0,0,0,0,0,0.102268682502155,0,0,0,0,0,0.0986434056369336,0,0,0,0,0,0,72.854179996831,0,0,0,0.236387681767936,0.344743373241465,0,0,0,0,0,0,0.295547618953547,0,0,0.278847488557207,0,0,0,0.0897576444097721,0,0.31900115973192,0.0915975934018623,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.832048038078832,0.173559738335131,0,0,0,0,0,0,0,0,0,0,0.274083849293502,0.19871461170299,0,0,0,0,0.19980960958213,0,0,0.171594997861965,0,0,0,0,0,0.101998217636322,0,0,0,0,0,0,0,0,0,0,0,0,0,0.360299883542404,0,0,0,0,0,0.0846733320657845,0,0,0,0.275078873194468,0,0,0,0,0,0.0788057072991982,0,0,0,0,0,0,0,0,0.864221491201268,0,0,0,0,0.339936274560377,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.124980407962107,0,0,0.235265819698172,0,0.144921028610825,0.298509605773748,0,0,0,0,0,0,0,0,0,0.159296767163702,0.449803112163605,0.155262956876259,0,0,0,0,0.380805212168795,0,3.27327586564607,0,0,0,1.20008329398946,0,0,0,0,0,0,0.226705925512272,1.15761237161917,0,0,0,0,0.530067437837643,0,0,0,0,0,0,0,0,0,0,0,0.211312123358627,0,0,0,0,0.184105950251841,0,0,0,0,0,0,0,0,0,0,0,0,0,0.705351887381368,1.2249819094128,0,0,0.638535436228605,0,0,0.138314504928436,0,0,0.294443155503077,0,0.550285795565037,0.115525666150338,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.443511850813194,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.801711364730253,0,0.51215543128185,2.76503864725637,0,0.354996002191696,0.681707238073262,0,0,0,0,0,0,0,0,0,0,3.88568794447312,0,0,0,0,0,0.150962843566674,0.0771741581079447,0.218559560503957,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0757786982182394,0,0,0,0,0,0.0645889098360061,0.186224142887574,0,0,0,0,0.342233301085281,0,0,0,0.488419611665847,0,1.9307228228694,0,0,0,0,0,0,0 | |phase1_expression=0.363356758541113,0,0.704772020479856,0,0,0,7.59899634504932,0.631719873426831,0,0.245733936501509,0,0,0,0.247532705920093,0,0,0.602694528023977,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.272906150057846,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.283604451492204,0.665188192387692,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.993943903390637,0,0.132409180813219,0,0,0,0,0,0,0,0,0,0,0,7.80400192075801,1.1409436430889,0.149448680551801,0,0,0.280901613404497,4.69554593886255,7.73856199064138,1.23990937410919,1.18800285728205,0,0.910161361938026,5.03032699271367,0.673344455816265,0.500474079487857,7.20366700258876,0.877955241761676,1.5324389789951,0.150238058906597,0,0,0,0,0.600182192168805,0,0.257640540045629,0,0.337552664482532,0.0974370051611986,0,0.184099797284599,0,0.355009592516614,0,0.169560592310488,0,0.272746120590835,0.286804595389004,0.243947412259191,0.132529768321485,0.348581828608555,4.35376431064556,0.756962552626885,0,0,0,1.38134921352481,1.85747171212792,2.88751792667834,0.118306800039844,0,0.241011029883482,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.857839051492628,0.109750285408626,0,0,0.185176890317059,0,7.27954349695705,2.88662684050547,0.231860809950154,0,0,0,0,0,0,0,0,0,0,0,0.992425680696705,0,0,0,0,0,0,0,0,0,0,0,0,0.102827492703324,0,0,0,0,0,0.129271715757778,3.57656445851882,0,0.26593811658487,0,10.5455023447478,0,4.79559922228979,0.285955987316295,0.542621605391443,0,0,0.355391948742546,0,0,0,0,0,0,0,0,0,1.42636905040718,0.144781306667579,1.02738161275192,0.179060963239896,0.112085143993527,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.356857977594324,0.315404830067869,0,0,0,0,0,0,0.0868836144680828,0.195801157462741,1.37257369524342,0,0,0,0,0,0,0,0.153461973288062,0,0.384417447767103,0.511707249066704,0.64341568457443,0,1.3878872442239,0.355123450626254,0.328508624055237,1.55776328755086,0.232420756919918,0,0.200506470303285,0,0.459257792658427,1.0925470080403,0.393373244878272,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.261435451024901,1.02580050046556,0.328014645699706,0,0.515205058238611,0,0.082509499920588,0,0,0,0,0.154048617114644,0.15350367472613,0.413509717453592,0.214840489736547,0.145016693914229,0.340906509664404,0.712256285173899,0,0,0,0,0,0.31481234683064,0,0,0,0,1.48259375283136,0,0.744316738719335,0,2.85945290885737,2.303080121802,0,0,0,5.21630126991613,0.54907405947211,1.7671860351853,0,3.17020642346017,0,1.95053495635836,0,0,0.272999822815972,1.55545975149084,0,0,0.66343897524122,1.31535265576129,1.73632660280006,0.655894752046633,0,0,0,0,0.196498082026242,0,0.354761064070598,0,0,2.27683904259429,7.34862912514464,0,0,0,0.282431402330337,0.43050537267123,1.68471475667626,0.443430153536676,0.229723400206959,0,0,0,0,0,0,0,0,2.35012956480441,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.334330152832435,3.69376990848337,0,0,0,0,0,0,0,0,0,0,0,0.102268682502155,0,0,0,0,0,0.0986434056369336,0,0,0,0,0,0,72.854179996831,0,0,0,0.236387681767936,0.344743373241465,0,0,0,0,0,0,0.295547618953547,0,0,0.278847488557207,0,0,0,0.0897576444097721,0,0.31900115973192,0.0915975934018623,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.832048038078832,0.173559738335131,0,0,0,0,0,0,0,0,0,0,0.274083849293502,0.19871461170299,0,0,0,0,0.19980960958213,0,0,0.171594997861965,0,0,0,0,0,0.101998217636322,0,0,0,0,0,0,0,0,0,0,0,0,0,0.360299883542404,0,0,0,0,0,0.0846733320657845,0,0,0,0.275078873194468,0,0,0,0,0,0.0788057072991982,0,0,0,0,0,0,0,0,0.864221491201268,0,0,0,0,0.339936274560377,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.124980407962107,0,0,0.235265819698172,0,0.144921028610825,0.298509605773748,0,0,0,0,0,0,0,0,0,0.159296767163702,0.449803112163605,0.155262956876259,0,0,0,0,0.380805212168795,0,3.27327586564607,0,0,0,1.20008329398946,0,0,0,0,0,0,0.226705925512272,1.15761237161917,0,0,0,0,0.530067437837643,0,0,0,0,0,0,0,0,0,0,0,0.211312123358627,0,0,0,0,0.184105950251841,0,0,0,0,0,0,0,0,0,0,0,0,0,0.705351887381368,1.2249819094128,0,0,0.638535436228605,0,0,0.138314504928436,0,0,0.294443155503077,0,0.550285795565037,0.115525666150338,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.443511850813194,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.801711364730253,0,0.51215543128185,2.76503864725637,0,0.354996002191696,0.681707238073262,0,0,0,0,0,0,0,0,0,0,3.88568794447312,0,0,0,0,0,0.150962843566674,0.0771741581079447,0.218559560503957,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0757786982182394,0,0,0,0,0,0.0645889098360061,0.186224142887574,0,0,0,0,0.342233301085281,0,0,0,0.488419611665847,0,1.9307228228694,0,0,0,0,0,0,0 | ||
|short_description=p4@SERINC2 | |short_description=p4@SERINC2 | ||
}} | }} |
Latest revision as of 13:07, 17 September 2015
Short description: | p4@SERINC2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_SERINC2_5end |
Coexpression cluster: | C108_breast_hepatoblastoma_MCF7_parotid_salivary_submaxillary_prostate |
Association with transcript: | 205bp_to_ENST00000373710, NM_001199038_5end |
EntrezGene: | SERINC2 |
HGNC: | 23231 |
UniProt: | E7EUZ9Q96IM8Q96SA4 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast of gingiva | 1.39e-13 | 5 |
trabecular meshwork cell | 1.09e-09 | 2 |
outer root sheath cell | 2.14e-09 | 2 |
hair follicle cell | 5.74e-08 | 5 |
smooth muscle cell | 1.01e-07 | 43 |
smooth muscle myoblast | 1.01e-07 | 43 |
muscle precursor cell | 1.19e-07 | 58 |
myoblast | 1.19e-07 | 58 |
multi-potent skeletal muscle stem cell | 1.19e-07 | 58 |
muscle cell | 7.20e-07 | 55 |
Ontology term | p-value | n |
---|---|---|
subdivision of head | 8.62e-10 | 49 |
reticulum trabeculare | 1.09e-09 | 2 |
aqueous drainage system | 1.09e-09 | 2 |
somite | 1.52e-09 | 71 |
presomitic mesoderm | 1.52e-09 | 71 |
presumptive segmental plate | 1.52e-09 | 71 |
dermomyotome | 1.52e-09 | 71 |
trunk paraxial mesoderm | 1.52e-09 | 71 |
ectodermal placode | 1.91e-09 | 31 |
hair root sheath | 2.14e-09 | 2 |
hair outer root sheath | 2.14e-09 | 2 |
bulb of hair follicle | 2.14e-09 | 2 |
paraxial mesoderm | 2.29e-09 | 72 |
presumptive paraxial mesoderm | 2.29e-09 | 72 |
surface structure | 2.29e-09 | 99 |
dense mesenchyme tissue | 3.41e-09 | 73 |
multilaminar epithelium | 6.41e-09 | 83 |
gingiva | 1.62e-08 | 8 |
epithelial vesicle | 2.12e-08 | 78 |
head | 2.92e-08 | 56 |
hair follicle | 5.74e-08 | 5 |
hair follicle placode | 5.74e-08 | 5 |
anterior region of body | 3.14e-07 | 62 |
craniocervical region | 3.14e-07 | 62 |
skeletal muscle tissue | 5.24e-07 | 62 |
striated muscle tissue | 5.24e-07 | 62 |
myotome | 5.24e-07 | 62 |