FFCP PHASE1:Hg19::chr1:31882617..31882630,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=347735 | |EntrezGene=347735 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=23231 | |HGNC=23231 | ||
|TSSclassifier=strong | |||
|UniProt=E7EUZ9,Q96IM8,Q96SA4 | |UniProt=E7EUZ9,Q96IM8,Q96SA4 | ||
|association_with_transcript=205bp_to_ENST00000373710,NM_001199038_5end | |association_with_transcript=205bp_to_ENST00000373710,NM_001199038_5end | ||
|cluster_id=chr1:31882617..31882630,+ | |||
|coexpression_cluster_id=C108 | |coexpression_cluster_id=C108 | ||
|description=CAGE_peak_4_at_SERINC2_5end | |description=CAGE_peak_4_at_SERINC2_5end | ||
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|ontology_enrichment_celltype=CL:0000055!2.28e-18!180;CL:0000057!6.43e-12!75;CL:0000680!1.06e-10!57;CL:0000056!1.06e-10!57;CL:0000355!1.06e-10!57;CL:0000183!2.49e-09!59;CL:0000187!4.01e-09!54;CL:0000393!3.57e-08!60;CL:0000211!3.57e-08!60;CL:0002556!1.85e-07!6;CL:0002371!3.20e-07!591;CL:0000144!5.26e-07!625 | |ontology_enrichment_celltype=CL:0000055!2.28e-18!180;CL:0000057!6.43e-12!75;CL:0000680!1.06e-10!57;CL:0000056!1.06e-10!57;CL:0000355!1.06e-10!57;CL:0000183!2.49e-09!59;CL:0000187!4.01e-09!54;CL:0000393!3.57e-08!60;CL:0000211!3.57e-08!60;CL:0002556!1.85e-07!6;CL:0002371!3.20e-07!591;CL:0000144!5.26e-07!625 | ||
|ontology_enrichment_celltype_v019=CL:0002552;1.05e-13;5!CL:0002367;9.32e-10;2!CL:0002561;3.60e-09;2!CL:0002559;7.64e-08;5 | |ontology_enrichment_celltype_v019=CL:0002552;1.05e-13;5!CL:0002367;9.32e-10;2!CL:0002561;3.60e-09;2!CL:0002559;7.64e-08;5 | ||
|ontology_enrichment_celltype_v019_2=CL:0002552,1.39e-13,5;CL:0002367,1.09e-09,2;CL:0002561,2.14e-09,2;CL:0002559,5.74e-08,5;CL:0000192,1.01e-07,43;CL:0000514,1.01e-07,43;CL:0000680,1.19e-07,58;CL:0000056,1.19e-07,58;CL:0000355,1.19e-07,58;CL:0000187,7.20e-07,55 | |||
|ontology_enrichment_development_v019= | |ontology_enrichment_development_v019= | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003102!2.00e-17!95;UBERON:0000914!1.06e-15!83;UBERON:0002329!1.06e-15!83;UBERON:0003077!1.06e-15!83;UBERON:0003059!1.06e-15!83;UBERON:0007282!1.06e-15!83;UBERON:0009618!1.06e-15!83;UBERON:0007285!1.06e-15!83;UBERON:0001444!3.96e-15!48;UBERON:0000486!1.05e-13!82;UBERON:0000475!4.92e-12!365;UBERON:0004290!3.21e-11!70;UBERON:0000165!4.70e-11!28;UBERON:0000930!4.70e-11!28;UBERON:0002385!1.65e-09!63;UBERON:0001015!1.65e-09!63;UBERON:0000383!1.65e-09!63;UBERON:0001134!2.00e-09!61;UBERON:0002036!2.00e-09!61;UBERON:0003082!2.00e-09!61;UBERON:0000161!1.95e-08!35;UBERON:0005256!2.60e-08!143;UBERON:0001758!1.85e-07!6;UBERON:0003672!1.85e-07!6 | |ontology_enrichment_uberon=UBERON:0003102!2.00e-17!95;UBERON:0000914!1.06e-15!83;UBERON:0002329!1.06e-15!83;UBERON:0003077!1.06e-15!83;UBERON:0003059!1.06e-15!83;UBERON:0007282!1.06e-15!83;UBERON:0009618!1.06e-15!83;UBERON:0007285!1.06e-15!83;UBERON:0001444!3.96e-15!48;UBERON:0000486!1.05e-13!82;UBERON:0000475!4.92e-12!365;UBERON:0004290!3.21e-11!70;UBERON:0000165!4.70e-11!28;UBERON:0000930!4.70e-11!28;UBERON:0002385!1.65e-09!63;UBERON:0001015!1.65e-09!63;UBERON:0000383!1.65e-09!63;UBERON:0001134!2.00e-09!61;UBERON:0002036!2.00e-09!61;UBERON:0003082!2.00e-09!61;UBERON:0000161!1.95e-08!35;UBERON:0005256!2.60e-08!143;UBERON:0001758!1.85e-07!6;UBERON:0003672!1.85e-07!6 | ||
|ontology_enrichment_uberon_v019=UBERON:0005969;9.32e-10;2!UBERON:0003956;9.32e-10;2!UBERON:0005933;3.60e-09;2!UBERON:0005942;3.60e-09;2!UBERON:0005932;3.60e-09;2!UBERON:0001828;1.37e-08;8!UBERON:0002073;7.64e-08;5!UBERON:0001444;1.68e-07;48!UBERON:0000033;1.85e-07;50 | |ontology_enrichment_uberon_v019=UBERON:0005969;9.32e-10;2!UBERON:0003956;9.32e-10;2!UBERON:0005933;3.60e-09;2!UBERON:0005942;3.60e-09;2!UBERON:0005932;3.60e-09;2!UBERON:0001828;1.37e-08;8!UBERON:0002073;7.64e-08;5!UBERON:0001444;1.68e-07;48!UBERON:0000033;1.85e-07;50 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0001444,8.62e-10,49;UBERON:0005969,1.09e-09,2;UBERON:0003956,1.09e-09,2;UBERON:0002329,1.52e-09,71;UBERON:0003059,1.52e-09,71;UBERON:0007282,1.52e-09,71;UBERON:0004290,1.52e-09,71;UBERON:0009618,1.52e-09,71;UBERON:0005085,1.91e-09,31;UBERON:0005933,2.14e-09,2;UBERON:0005942,2.14e-09,2;UBERON:0005932,2.14e-09,2;UBERON:0003077,2.29e-09,72;UBERON:0007285,2.29e-09,72;UBERON:0003102,2.29e-09,99;UBERON:0007524,3.41e-09,73;UBERON:0000486,6.41e-09,83;UBERON:0001828,1.62e-08,8;UBERON:0007503,2.12e-08,78;UBERON:0000033,2.92e-08,56;UBERON:0002073,5.74e-08,5;UBERON:0005086,5.74e-08,5;UBERON:0000153,3.14e-07,62;UBERON:0007811,3.14e-07,62;UBERON:0001134,5.24e-07,62;UBERON:0002036,5.24e-07,62;UBERON:0003082,5.24e-07,62 | |||
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| ||
|short_description=p4@SERINC2 | |short_description=p4@SERINC2 | ||
}} | }} |
Latest revision as of 13:07, 17 September 2015
Short description: | p4@SERINC2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_SERINC2_5end |
Coexpression cluster: | C108_breast_hepatoblastoma_MCF7_parotid_salivary_submaxillary_prostate |
Association with transcript: | 205bp_to_ENST00000373710, NM_001199038_5end |
EntrezGene: | SERINC2 |
HGNC: | 23231 |
UniProt: | E7EUZ9Q96IM8Q96SA4 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast of gingiva | 1.39e-13 | 5 |
trabecular meshwork cell | 1.09e-09 | 2 |
outer root sheath cell | 2.14e-09 | 2 |
hair follicle cell | 5.74e-08 | 5 |
smooth muscle cell | 1.01e-07 | 43 |
smooth muscle myoblast | 1.01e-07 | 43 |
muscle precursor cell | 1.19e-07 | 58 |
myoblast | 1.19e-07 | 58 |
multi-potent skeletal muscle stem cell | 1.19e-07 | 58 |
muscle cell | 7.20e-07 | 55 |
Ontology term | p-value | n |
---|---|---|
subdivision of head | 8.62e-10 | 49 |
reticulum trabeculare | 1.09e-09 | 2 |
aqueous drainage system | 1.09e-09 | 2 |
somite | 1.52e-09 | 71 |
presomitic mesoderm | 1.52e-09 | 71 |
presumptive segmental plate | 1.52e-09 | 71 |
dermomyotome | 1.52e-09 | 71 |
trunk paraxial mesoderm | 1.52e-09 | 71 |
ectodermal placode | 1.91e-09 | 31 |
hair root sheath | 2.14e-09 | 2 |
hair outer root sheath | 2.14e-09 | 2 |
bulb of hair follicle | 2.14e-09 | 2 |
paraxial mesoderm | 2.29e-09 | 72 |
presumptive paraxial mesoderm | 2.29e-09 | 72 |
surface structure | 2.29e-09 | 99 |
dense mesenchyme tissue | 3.41e-09 | 73 |
multilaminar epithelium | 6.41e-09 | 83 |
gingiva | 1.62e-08 | 8 |
epithelial vesicle | 2.12e-08 | 78 |
head | 2.92e-08 | 56 |
hair follicle | 5.74e-08 | 5 |
hair follicle placode | 5.74e-08 | 5 |
anterior region of body | 3.14e-07 | 62 |
craniocervical region | 3.14e-07 | 62 |
skeletal muscle tissue | 5.24e-07 | 62 |
striated muscle tissue | 5.24e-07 | 62 |
myotome | 5.24e-07 | 62 |