FFCP PHASE1:Hg19::chr12:16761117..16761128,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=55885 | |EntrezGene=55885 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6643 | |HGNC=6643 | ||
|TSSclassifier=strong | |||
|UniProt=F5H2N9,B4DG90,Q8TAP4,Q9NYC6 | |UniProt=F5H2N9,B4DG90,Q8TAP4,Q9NYC6 | ||
|association_with_transcript=19bp_to_ENST00000538051,NM_001001395,NM_001243609,NR_045012,NR_045013,NR_045014_5end | |association_with_transcript=19bp_to_ENST00000538051,NM_001001395,NM_001243609,NR_045012,NR_045013,NR_045014_5end | ||
|cluster_id=chr12:16761117..16761128,- | |||
|coexpression_cluster_id=C10 | |||
|description=CAGE_peak_25_at_LMO3_5end | |description=CAGE_peak_25_at_LMO3_5end | ||
|id=chr12:16761117..16761128,- | |id=chr12:16761117..16761128,- | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0000047;9.01e-07;2 | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0009847;1.53e-15;3!UBERON:0003353;1.53e-15;3 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
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|ontology_enrichment_uberon_v019=UBERON:0001950;9.14e-19;20!UBERON:0002619;4.16e-17;22!UBERON:0000956;4.27e-15;25!UBERON:0000203;4.27e-15;25!UBERON:0002022;2.75e-12;1!UBERON:0002791;6.59e-11;32!UBERON:0001869;9.29e-11;32!UBERON:0003528;2.73e-10;34!UBERON:0002020;2.73e-10;34!UBERON:0001893;4.56e-09;34!UBERON:0002780;3.11e-08;41!UBERON:0001890;3.11e-08;41!UBERON:0001016;5.82e-08;83!UBERON:0001871;2.48e-07;6!UBERON:0001255;9.01e-07;2!UBERON:0001876;9.01e-07;2!UBERON:0001556;9.01e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001950,1.02e-18,20;UBERON:0002619,4.60e-17,22;UBERON:0000956,4.67e-15,25;UBERON:0000203,4.67e-15,25;UBERON:0002022,3.85e-12,1;UBERON:0001017,4.65e-12,81;UBERON:0002791,8.66e-12,32;UBERON:0001869,8.66e-12,32;UBERON:0003528,4.29e-11,34;UBERON:0002020,4.29e-11,34;UBERON:0001893,4.29e-11,34;UBERON:0001016,9.52e-11,89;UBERON:0000955,2.56e-09,68;UBERON:0006238,2.56e-09,68;UBERON:0002780,3.52e-09,41;UBERON:0001890,3.52e-09,41;UBERON:0003080,3.52e-09,41;UBERON:0006240,3.52e-09,41;UBERON:0000162,1.25e-07,14;UBERON:0001353,1.25e-07,14;UBERON:0000163,1.25e-07,14;UBERON:0006866,1.25e-07,14;UBERON:0000164,1.25e-07,14;UBERON:0000931,1.25e-07,14;UBERON:0011216,1.42e-07,223;UBERON:0001871,2.15e-07,6;UBERON:0004122,3.74e-07,15;UBERON:0000073,4.77e-07,53;UBERON:0002616,4.77e-07,53;UBERON:0001876,7.20e-07,2;UBERON:0001255,7.61e-07,2;UBERON:0001556,7.61e-07,2 | |||
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| ||
|short_description=p25@LMO3 | |short_description=p25@LMO3 | ||
}} | }} |
Latest revision as of 16:34, 17 September 2015
Short description: | p25@LMO3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_25_at_LMO3_5end |
Coexpression cluster: | C10_occipital_temporal_parietal_brain_duodenum_Neurons_Neural |
Association with transcript: | 19bp_to_ENST00000538051, NM_001001395, NM_001243609, NR_045012, NR_045013, NR_045014_5end |
EntrezGene: | LMO3 |
HGNC: | 6643 |
UniProt: | F5H2N9B4DG90Q8TAP4Q9NYC6 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neocortex | 1.02e-18 | 20 |
regional part of cerebral cortex | 4.60e-17 | 22 |
cerebral cortex | 4.67e-15 | 25 |
pallium | 4.67e-15 | 25 |
insula | 3.85e-12 | 1 |
central nervous system | 4.65e-12 | 81 |
regional part of telencephalon | 8.66e-12 | 32 |
cerebral hemisphere | 8.66e-12 | 32 |
brain grey matter | 4.29e-11 | 34 |
gray matter | 4.29e-11 | 34 |
telencephalon | 4.29e-11 | 34 |
nervous system | 9.52e-11 | 89 |
brain | 2.56e-09 | 68 |
future brain | 2.56e-09 | 68 |
regional part of forebrain | 3.52e-09 | 41 |
forebrain | 3.52e-09 | 41 |
anterior neural tube | 3.52e-09 | 41 |
future forebrain | 3.52e-09 | 41 |
cloaca | 1.25e-07 | 14 |
anal region | 1.25e-07 | 14 |
embryonic cloaca | 1.25e-07 | 14 |
terminal part of digestive tract | 1.25e-07 | 14 |
primitive urogenital sinus | 1.25e-07 | 14 |
proctodeum | 1.25e-07 | 14 |
organ system subdivision | 1.42e-07 | 223 |
temporal lobe | 2.15e-07 | 6 |
genitourinary system | 3.74e-07 | 15 |
regional part of nervous system | 4.77e-07 | 53 |
regional part of brain | 4.77e-07 | 53 |
amygdala | 7.20e-07 | 2 |
urinary bladder | 7.61e-07 | 2 |
lower urinary tract | 7.61e-07 | 2 |