FFCP PHASE1:Hg19::chr21:15918672..15918683,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |DHSsupport=supported | ||
|DPIdataset=robust | |DPIdataset=robust | ||
|EntrezGene=64092 | |EntrezGene=64092 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | ||
|HGNC=10528 | |HGNC=10528 | ||
|TSSclassifier= | |TSSclassifier=strong | ||
|UniProt=Q9NSI8 | |UniProt=Q9NSI8 | ||
|association_with_transcript=-8bp_to_ENST00000400566,NM_022136,uc002yju.1,uc010gky.1_5end | |association_with_transcript=-8bp_to_ENST00000400566,NM_022136,uc002yju.1,uc010gky.1_5end | ||
|cluster_id=chr21:15918672..15918683,- | |||
|coexpression_cluster_id=C1875 | |coexpression_cluster_id=C1875 | ||
|description=CAGE_peak_2_at_SAMSN1_5end | |description=CAGE_peak_2_at_SAMSN1_5end | ||
Latest revision as of 18:27, 17 September 2015
| Short description: | p2@SAMSN1 |
|---|---|
| Species: | Human (Homo sapiens) |
| DPI dataset: | Robust |
| TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
| DHS support(Yes/No): | Yes |
| Description: | CAGE_peak_2_at_SAMSN1_5end |
| Coexpression cluster: | C1875_migratory_CD14_CD14CD16_CD4_Basophils_NK_acute |
| Association with transcript: | -8bp_to_ENST00000400566, NM_022136, uc002yju.1, uc010gky.1_5end |
| EntrezGene: | SAMSN1 |
| HGNC: | 10528 |
| UniProt: | Q9NSI8 |
| Genome view: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
| Sample | p2@SAMSN1 |
|---|
0
25
50
75
100
125
150
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| hematopoietic stem cell | 9.57e-104 | 168 |
| hematopoietic oligopotent progenitor cell | 3.18e-100 | 161 |
| hematopoietic multipotent progenitor cell | 3.18e-100 | 161 |
| hematopoietic cell | 2.83e-97 | 177 |
| leukocyte | 2.44e-91 | 136 |
| nongranular leukocyte | 9.34e-74 | 115 |
| hematopoietic lineage restricted progenitor cell | 1.36e-73 | 120 |
| myeloid cell | 2.65e-70 | 108 |
| common myeloid progenitor | 2.65e-70 | 108 |
| myeloid leukocyte | 2.01e-58 | 72 |
Showing 1 to 10 of 45 entries
| Ontology term | p-value | n |
|---|---|---|
| hematopoietic system | 2.64e-55 | 98 |
| blood island | 2.64e-55 | 98 |
| hemolymphoid system | 7.07e-50 | 108 |
| bone marrow | 1.07e-44 | 76 |
| immune system | 1.69e-42 | 93 |
| bone element | 1.44e-39 | 82 |
| skeletal element | 7.76e-34 | 90 |
| skeletal system | 5.00e-28 | 100 |
| connective tissue | 2.25e-21 | 371 |
| lateral plate mesoderm | 9.20e-16 | 203 |
Showing 1 to 10 of 14 entries
| Ontology term | p-value | n |
|---|---|---|
| hematologic cancer | 3.60e-10 | 51 |
| immune system cancer | 3.60e-10 | 51 |
| leukemia | 1.02e-09 | 39 |
| myeloid leukemia | 5.17e-09 | 31 |
Showing 1 to 4 of 4 entries
