FFCP PHASE1:Hg19::chr19:38865399..38865435,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=5714 | |EntrezGene=5714 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9566 | |HGNC=9566 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-213bp_to_uc010efx.1_5end | |association_with_transcript=-213bp_to_uc010efx.1_5end | ||
|cluster_id=chr19:38865399..38865435,+ | |||
|coexpression_cluster_id=C534 | |||
|description=CAGE_peak_1_at_PSMD8_5end | |description=CAGE_peak_1_at_PSMD8_5end | ||
|id=chr19:38865399..38865435,+ | |id=chr19:38865399..38865435,+ | ||
|ontology_enrichment_celltype=CL:0000548!5.18e-27!679;CL:0000004!5.18e-27!679;CL:0000255!5.18e-27!679;CL:0000012!7.76e-26!682;CL:0000144!9.07e-25!625;CL:0000220!2.07e-24!246;CL:0002321!3.98e-24!248;CL:0000222!2.12e-23!119;CL:0002371!3.23e-22!591;CL:0000055!1.01e-18!180;CL:0000183!1.18e-18!59;CL:0000680!3.50e-17!57;CL:0000056!3.50e-17!57;CL:0000355!3.50e-17!57;CL:0000187!2.32e-16!54;CL:0000393!1.28e-15!60;CL:0000211!1.28e-15!60;CL:0000192!3.69e-15!42;CL:0000514!3.69e-15!42;CL:0000003!4.06e-13!722;CL:0000359!1.45e-12!32;CL:0000066!2.77e-10!254;CL:0000325!4.68e-09!39;CL:1000497!1.09e-07!18;CL:0002518!1.09e-07!18;CL:1000449!1.22e-07!16;CL:0000213!2.79e-07!57;CL:0000215!2.79e-07!57;CL:0000063!4.59e-07!578 | |ontology_enrichment_celltype=CL:0000548!5.18e-27!679;CL:0000004!5.18e-27!679;CL:0000255!5.18e-27!679;CL:0000012!7.76e-26!682;CL:0000144!9.07e-25!625;CL:0000220!2.07e-24!246;CL:0002321!3.98e-24!248;CL:0000222!2.12e-23!119;CL:0002371!3.23e-22!591;CL:0000055!1.01e-18!180;CL:0000183!1.18e-18!59;CL:0000680!3.50e-17!57;CL:0000056!3.50e-17!57;CL:0000355!3.50e-17!57;CL:0000187!2.32e-16!54;CL:0000393!1.28e-15!60;CL:0000211!1.28e-15!60;CL:0000192!3.69e-15!42;CL:0000514!3.69e-15!42;CL:0000003!4.06e-13!722;CL:0000359!1.45e-12!32;CL:0000066!2.77e-10!254;CL:0000325!4.68e-09!39;CL:1000497!1.09e-07!18;CL:0002518!1.09e-07!18;CL:1000449!1.22e-07!16;CL:0000213!2.79e-07!57;CL:0000215!2.79e-07!57;CL:0000063!4.59e-07!578 | ||
|ontology_enrichment_celltype_v019=CL:0000359;9.75e-12;32!CL:0000192;4.98e-11;43!CL:0000187;1.88e-09;55!CL:0000393;3.19e-08;61!CL:0000211;3.19e-08;61!CL:1000497;1.32e-07;17!CL:0002518;1.32e-07;17!CL:1000449;1.43e-07;15 | |||
|ontology_enrichment_celltype_v019_2=CL:0002321,1.41e-24,250;CL:0000222,8.05e-24,121;CL:0000680,2.60e-17,58;CL:0000056,2.60e-17,58;CL:0000355,2.60e-17,58;CL:0000187,1.73e-16,55;CL:0000393,9.30e-16,61;CL:0000211,9.30e-16,61;CL:0000192,2.89e-15,43;CL:0000514,2.89e-15,43;CL:0000359,1.45e-12,32;CL:0000066,3.76e-10,253;CL:1000497,1.33e-07,17;CL:0002518,1.33e-07,17;CL:1000449,1.43e-07,15;CL:0000213,1.77e-07,58;CL:0000215,1.77e-07,58 | |||
|ontology_enrichment_development_v019=CL:0000514;4.98e-11;43!CL:0000355;1.16e-09;58!CL:0000222;7.07e-07;121 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004290!3.97e-18!70;UBERON:0000486!9.06e-18!82;UBERON:0002100!1.12e-17!216;UBERON:0005256!1.57e-17!143;UBERON:0001134!4.77e-17!61;UBERON:0002036!4.77e-17!61;UBERON:0003082!4.77e-17!61;UBERON:0000914!4.91e-17!83;UBERON:0002329!4.91e-17!83;UBERON:0003077!4.91e-17!83;UBERON:0003059!4.91e-17!83;UBERON:0007282!4.91e-17!83;UBERON:0009618!4.91e-17!83;UBERON:0007285!4.91e-17!83;UBERON:0002385!1.94e-15!63;UBERON:0001015!1.94e-15!63;UBERON:0000383!1.94e-15!63;UBERON:0003914!1.98e-15!118;UBERON:0004872!4.60e-14!84;UBERON:0000490!5.34e-14!138;UBERON:0002049!2.20e-13!79;UBERON:0007798!2.20e-13!79;UBERON:0003104!1.15e-12!238;UBERON:0009142!1.15e-12!238;UBERON:0001637!2.66e-12!42;UBERON:0003509!2.66e-12!42;UBERON:0004572!2.66e-12!42;UBERON:0000055!4.06e-12!69;UBERON:0001981!7.19e-12!60;UBERON:0007500!7.19e-12!60;UBERON:0004537!7.19e-12!60;UBERON:0006965!7.19e-12!60;UBERON:0001009!8.16e-10!113;UBERON:0000119!2.76e-09!312;UBERON:0000483!5.09e-09!309;UBERON:0004535!6.47e-09!110;UBERON:0004573!9.86e-09!33;UBERON:0004571!9.86e-09!33;UBERON:0004211!1.22e-07!16;UBERON:0001285!1.22e-07!16;UBERON:0007684!1.22e-07!16;UBERON:0003220!1.22e-07!16;UBERON:0004208!1.22e-07!16;UBERON:0000353!1.42e-07!17;UBERON:0009569!1.71e-07!113;UBERON:0000475!3.33e-07!365;UBERON:0003103!7.84e-07!69;UBERON:0006555!9.57e-07!17;UBERON:0005103!9.57e-07!17;UBERON:0000083!9.57e-07!17;UBERON:0009201!9.57e-07!17;UBERON:0004819!9.57e-07!17;UBERON:0006553!9.57e-07!17;UBERON:0003074!9.57e-07!17;UBERON:0003060!9.57e-07!17 | |||
|ontology_enrichment_uberon_v019=UBERON:0001637;1.53e-08;42!UBERON:0003509;1.53e-08;42!UBERON:0004572;1.53e-08;42!UBERON:0003914;5.20e-08;74!UBERON:0007500;7.99e-08;56!UBERON:0001981;7.99e-08;56!UBERON:0004537;7.99e-08;56!UBERON:0004573;8.45e-08;33!UBERON:0004571;8.45e-08;33!UBERON:0006555;1.43e-07;15!UBERON:0004819;1.43e-07;15!UBERON:0001285;1.43e-07;15!UBERON:0007684;1.43e-07;15!UBERON:0000353;2.26e-07;15 | |||
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| ||
|short_description=p1@PSMD8 | |short_description=p1@PSMD8 | ||
}} | }} |
Latest revision as of 19:32, 17 September 2015
Short description: | p1@PSMD8 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_PSMD8_5end |
Coexpression cluster: | C534_Mesenchymal_Alveolar_Renal_Placental_Fibroblast_Smooth_Tracheal |
Association with transcript: | -213bp_to_uc010efx.1_5end |
EntrezGene: | PSMD8 |
HGNC: | 9566 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic cell | 1.41e-24 | 250 |
mesodermal cell | 8.05e-24 | 121 |
muscle precursor cell | 2.60e-17 | 58 |
myoblast | 2.60e-17 | 58 |
multi-potent skeletal muscle stem cell | 2.60e-17 | 58 |
muscle cell | 1.73e-16 | 55 |
electrically responsive cell | 9.30e-16 | 61 |
electrically active cell | 9.30e-16 | 61 |
smooth muscle cell | 2.89e-15 | 43 |
smooth muscle myoblast | 2.89e-15 | 43 |
vascular associated smooth muscle cell | 1.45e-12 | 32 |
epithelial cell | 3.76e-10 | 253 |
kidney cell | 1.33e-07 | 17 |
kidney epithelial cell | 1.33e-07 | 17 |
epithelial cell of nephron | 1.43e-07 | 15 |
lining cell | 1.77e-07 | 58 |
barrier cell | 1.77e-07 | 58 |