FFCP PHASE1:Hg19::chr3:23986876..23986885,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=9975 | |EntrezGene=9975 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=7963 | |HGNC=7963 | ||
|TSSclassifier=strong | |||
|UniProt=Q6NSM0 | |UniProt=Q6NSM0 | ||
|association_with_transcript=10bp_to_ENST00000383773_5end | |association_with_transcript=10bp_to_ENST00000383773_5end | ||
|cluster_id=chr3:23986876..23986885,+ | |||
|coexpression_cluster_id=C123 | |||
|description=CAGE_peak_4_at_NR1D2_5end | |description=CAGE_peak_4_at_NR1D2_5end | ||
|id=chr3:23986876..23986885,+ | |id=chr3:23986876..23986885,+ | ||
|ontology_enrichment_celltype=CL:0000791!1.22e-08!18;CL:0000789!1.22e-08!18;CL:0002420!1.22e-08!18;CL:0002419!1.22e-08!18;CL:0000790!1.22e-08!18;CL:0000738!1.71e-07!140 | |ontology_enrichment_celltype=CL:0000791!1.22e-08!18;CL:0000789!1.22e-08!18;CL:0002420!1.22e-08!18;CL:0002419!1.22e-08!18;CL:0000790!1.22e-08!18;CL:0000738!1.71e-07!140 | ||
|ontology_enrichment_celltype_v019=CL:0000791;3.56e-11;18!CL:0000789;3.56e-11;18!CL:0002419;3.56e-11;18!CL:0000624;1.23e-09;6!CL:0000084;3.14e-09;25 | |||
|ontology_enrichment_celltype_v019_2=CL:0000791,4.01e-11,18;CL:0000789,4.01e-11,18;CL:0002420,4.01e-11,18;CL:0002419,4.01e-11,18;CL:0000790,4.01e-11,18;CL:0000624,1.38e-09,6;CL:0000084,5.72e-09,25;CL:0000827,5.72e-09,25;CL:0000838,4.00e-08,52;CL:0000542,7.58e-08,53;CL:0000051,7.58e-08,53;CL:0000738,1.14e-07,136 | |||
|ontology_enrichment_development_v019=CL:0000790;3.56e-11;18 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!3.24e-11!115;UBERON:0001049!3.68e-08!57;UBERON:0005068!3.68e-08!57;UBERON:0006241!3.68e-08!57;UBERON:0007135!3.68e-08!57;UBERON:0002619!6.03e-07!22;UBERON:0003080!7.66e-07!42;UBERON:0002780!9.99e-07!41;UBERON:0001890!9.99e-07!41;UBERON:0006240!9.99e-07!41 | |ontology_enrichment_uberon=UBERON:0007023!3.24e-11!115;UBERON:0001049!3.68e-08!57;UBERON:0005068!3.68e-08!57;UBERON:0006241!3.68e-08!57;UBERON:0007135!3.68e-08!57;UBERON:0002619!6.03e-07!22;UBERON:0003080!7.66e-07!42;UBERON:0002780!9.99e-07!41;UBERON:0001890!9.99e-07!41;UBERON:0006240!9.99e-07!41 | ||
|ontology_enrichment_uberon_v019=UBERON:0002619;1.11e-09;22!UBERON:0001950;2.26e-09;20!UBERON:0000956;4.55e-08;25!UBERON:0000203;4.55e-08;25 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002619,2.90e-10,22;UBERON:0001950,5.64e-10,20;UBERON:0000956,1.46e-08,25;UBERON:0000203,1.46e-08,25;UBERON:0001869,6.65e-08,32;UBERON:0003528,3.29e-07,34;UBERON:0002020,3.29e-07,34;UBERON:0001893,3.53e-07,34;UBERON:0001049,4.79e-07,56;UBERON:0005068,4.79e-07,56;UBERON:0006241,4.79e-07,56;UBERON:0007135,4.79e-07,56;UBERON:0002780,6.86e-07,41;UBERON:0001890,6.86e-07,41;UBERON:0003080,6.86e-07,41;UBERON:0006240,6.86e-07,41;UBERON:0002791,8.21e-07,32 | |||
|phase1_expression=2.54349730978779,0.214100523890983,0.422863212287913,0,0,0.872338524100369,0,0,0,0,0,0.218441372130172,0,0.123766352960047,0.331397375727916,0,0,0,0.975865597581014,0.246242116153576,0,0.313454721478088,0,0.410623275218653,0.125542639594803,0.0764134057479513,0.0821005894499457,0,2.75354993794233,9.97956435052753,4.33485145285013,0.919421224478927,0,0,0.387336002901508,0.426507697462265,0.880801318004542,3.32397245119126,3.40925560699241,3.03815219002193,0.223915474239924,0.32389366601898,0.257575567634187,0.145398238779565,0.377875943688809,0.242584061187816,0.929716147622738,0.822335776043652,0.619412741790207,0.863077176966451,0.512321413058201,0.236482229888585,0,0.645484683583826,0,0.564727018627814,0.272906150057846,0,0.306083892370903,1.60464513538047,1.27867425159808,0.659702600373432,0.398927315243264,0.426224750532694,0.870627715885752,0.56738522469114,0.622822248995575,1.00499466102697,0,0.434377689410233,0.605399502633369,1.47311054395026,0.316462387440884,0.633765858935825,0.850417199860174,0.838634582033504,0.22465726229299,0.450530678524519,0.803627933485401,0.570025487482497,0.79566670879636,0.365328307529268,0,0.546138611262131,1.77901850772711,1.28019066769952,0.800791974072025,0.574752439954483,0,0,6.26134266020393,8.22132065119314,8.02773779062981,3.96513985737078,5.04457706683382,0.263384084775077,4.91774425284583,11.7903228824749,9.66327045297693,0.501559486172034,3.58514493296949,3.78758244587787,1.94826728407911,0.222820913770347,4.71369451959739,3.76607620792156,0.812411591295047,0.128091319725675,0.390178042679635,0.328875809207352,1.10540007114339,1.44901542867526,2.37258501059297,2.67540828089713,0,0.339928028092699,3.06576394881537,2.06176467289578,1.77113784413652,0.637130828648193,0.651083453856419,2.85135613334512,1.05402583354441,0.76791966692651,1.24930726552346,0.710331756132051,1.64225599384209,8.87069670188823,14.1743303765259,8.54463982908514,0,0,0,1.0843174571537,1.50401373190767,0.724232594804119,1.5905718941022,1.45990461090791,0.189069634328136,0.221729397462564,0.087834785693126,0.392937226493138,0,0,0,0.174129737299267,0,1.43094374583205,1.71598473234038,2.22874500797739,0,0,0.347140501607594,0,0.419499436209906,0.550236083880135,0,0.775250277507987,0.35576626268671,0.66944122552934,0,0,0,0.735326160691737,0,0.535798369704479,1.12264686313085,0.225222960966644,0,0.949265659568129,0.732806975721629,0,0,0,2.48485975847659,1.01304409331664,1.05927344650575,0.573673241497627,0.354668382198357,0.560677600142307,0,0.49333509683432,0,0.134710672069688,0.326923806226917,0.151357427644931,0,0.234321431833797,0,0,0.149448680551801,0,0,0,0,0.368502951935304,0.309977343527296,0,0.247266929278557,0,0,0,0.250237039743928,0.277064115484183,0.877955241761676,1.22595118319608,0.751190294532984,0,2.33206526395521,0.640672166455702,0.847727604638247,0,0.206105058476878,0.515281080091258,0.558350568994769,1.0126579934476,1.65642908774038,1.7670364197088,0.184099797284599,0.161646056818812,1.06502877754984,0.705264687593482,1.01736355386293,0.193260853163297,0,0.286804595389004,0.121973706129595,0,0.116193942869518,0.207322110030741,0,0,0,0,0,0,0,0,0,0,0.330881918197182,0.217879444092406,0.237270619111097,0.269662616320329,0.196221465125346,0,0,0,0,0,0,0,0,0.882926198829301,0,0.343135620597051,0,0,0.301586917234893,0,0,0,0,0.927443239800615,0.469634776943287,1.01056513432752,0,0,0,0,0.246217006087397,0.468008530278475,0.148631162288728,0,0.503946384596579,0.141775097242386,0.53735113621709,0.290633938513962,0,0,0.616339038092582,1.03664057770386,0.144119953416961,1.00993946741104,0.126995788584338,0.381988425558278,1.17217447210047,0,0,0,0.285826432630578,0,0.43596006883328,0.22001485746285,0.387815147273333,0,0.845302752556,0.26593811658487,0,0,0,0,0,0,0,0.325736184293735,0,0,0,0,0.299918973546171,1.2162378064119,1.00451418286425,0,0.239624855491583,1.14861935834114,0,0.434343920002738,0.61642896765115,1.07436577943937,0.448340575974109,7.48716888767323,10.3501235932568,6.80218092282666,0,0,0.773288812777695,0,0,0.749007023947182,0,0.828831026872071,0.12269149171914,0,0,0.831883446123229,0.713715955188647,0.473107245101804,0,0.300946099727719,2.27407504055985,0,0,0,0.347534457872331,0,0.343143423810856,4.75566460082641,3.45142721309787,6.61710858381355,0,0,0,1.24053903909388,1.68808170616869,1.12264037773229,0.896974044789907,0.511707249066704,0.64341568457443,0,0.308419387605311,0.177561725313127,0.492762936082855,1.03850885836724,0.929683027679674,0.120859449591622,0.40101294060657,0.460404944679482,0.918515585316854,0,0.262248829918848,0,0,0.784349769176855,0,0.422206515571503,0,0.340187410553031,0.647747748306418,0,0,0,0,0,0.223874754722178,0,0,0.256450125116389,0,0.325378394664303,0.412164046590889,0.457847324091717,0.82509499920588,0,0,1.6068392984416,0.386682873168488,0.154048617114644,0,0,0.107420244868274,0,0,0.623224249527161,0.165284915360978,0.960950336825531,0.127612712494584,0.910420027699949,1.85938219718914,0.62962469366128,0,0.308033580176089,0.532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| ||
|short_description=p4@NR1D2 | |short_description=p4@NR1D2 | ||
}} | }} |
Latest revision as of 19:57, 17 September 2015
Short description: | p4@NR1D2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_NR1D2_5end |
Coexpression cluster: | C123_CD19_Natural_CD8_CD4_CD14_Peripheral_Basophils |
Association with transcript: | 10bp_to_ENST00000383773_5end |
EntrezGene: | NR1D2 |
HGNC: | 7963 |
UniProt: | Q6NSM0 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mature alpha-beta T cell | 4.01e-11 | 18 |
alpha-beta T cell | 4.01e-11 | 18 |
immature T cell | 4.01e-11 | 18 |
mature T cell | 4.01e-11 | 18 |
immature alpha-beta T cell | 4.01e-11 | 18 |
CD4-positive, alpha-beta T cell | 1.38e-09 | 6 |
T cell | 5.72e-09 | 25 |
pro-T cell | 5.72e-09 | 25 |
lymphoid lineage restricted progenitor cell | 4.00e-08 | 52 |
lymphocyte | 7.58e-08 | 53 |
common lymphoid progenitor | 7.58e-08 | 53 |
leukocyte | 1.14e-07 | 136 |
Ontology term | p-value | n |
---|---|---|
regional part of cerebral cortex | 2.90e-10 | 22 |
neocortex | 5.64e-10 | 20 |
cerebral cortex | 1.46e-08 | 25 |
pallium | 1.46e-08 | 25 |
cerebral hemisphere | 6.65e-08 | 32 |
brain grey matter | 3.29e-07 | 34 |
gray matter | 3.29e-07 | 34 |
telencephalon | 3.53e-07 | 34 |
neural tube | 4.79e-07 | 56 |
neural rod | 4.79e-07 | 56 |
future spinal cord | 4.79e-07 | 56 |
neural keel | 4.79e-07 | 56 |
regional part of forebrain | 6.86e-07 | 41 |
forebrain | 6.86e-07 | 41 |
anterior neural tube | 6.86e-07 | 41 |
future forebrain | 6.86e-07 | 41 |
regional part of telencephalon | 8.21e-07 | 32 |