FFCP PHASE1:Hg19::chr17:76354759..76354810,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr17:76354759..76354810,- to FFCP PHASE1:Hg19::chr17:76354759..76354810,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=9021 | |EntrezGene=9021 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=19391 | |HGNC=19391 | ||
|TSSclassifier=strong | |||
|UniProt=O14543,Q5U0H7,Q6FI39 | |UniProt=O14543,Q5U0H7,Q6FI39 | ||
|association_with_transcript=365bp_to_AB006967,AF159854,BT019544,CR536497,CR541694_5end | |||
|cluster_id=chr17:76354759..76354810,- | |||
|coexpression_cluster_id=C0 | |||
|description=CAGE_peak_3_at_SOCS3_5end | |||
|id=chr17:76354759..76354810,- | |||
|ontology_enrichment_celltype=CL:0002057!3.31e-20!42;CL:0000860!2.88e-18!45;CL:0000766!1.76e-14!76;CL:0000738!1.01e-12!140;CL:0000557!2.57e-11!71;CL:0002009!4.02e-11!65;CL:0002194!1.80e-10!63;CL:0000576!1.80e-10!63;CL:0000040!1.80e-10!63;CL:0000559!1.80e-10!63;CL:0000839!3.01e-10!70;CL:0002087!2.59e-08!119;CL:0002031!3.28e-08!124;CL:0002320!2.05e-07!365;CL:0000763!4.70e-07!112;CL:0000049!4.70e-07!112;CL:0000037!9.60e-07!172;CL:0000566!9.60e-07!172 | |||
|ontology_enrichment_celltype_v019=CL:0000860;4.94e-37;33!CL:0002057;4.94e-37;33!CL:0000473;2.03e-26;39!CL:0000234;2.03e-26;39!CL:0000576;2.66e-20;48!CL:0000766;3.19e-16;69!CL:0002087;1.83e-08;104!CL:0000094;5.98e-08;8!CL:0000763;1.21e-07;100!CL:0000775;8.10e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,3.50e-38,42;CL:0002057,3.50e-38,42;CL:0000766,5.72e-34,72;CL:0000473,5.95e-34,48;CL:0000234,5.95e-34,48;CL:0000839,1.84e-26,66;CL:0000557,6.74e-26,67;CL:0002194,6.00e-25,59;CL:0000576,6.00e-25,59;CL:0000040,6.00e-25,59;CL:0000559,6.00e-25,59;CL:0000738,1.10e-24,136;CL:0002009,8.54e-24,61;CL:0002087,9.53e-20,115;CL:0002031,1.09e-19,120;CL:0000763,2.65e-18,108;CL:0000049,2.65e-18,108;CL:0000037,6.15e-17,168;CL:0000988,6.81e-17,177;CL:0002032,1.90e-16,161;CL:0000837,1.90e-16,161;CL:0002320,1.23e-13,361;CL:0000134,5.98e-11,354;CL:0000219,9.22e-09,386;CL:0000048,2.51e-08,427;CL:0000094,5.90e-08,8;CL:0000723,6.21e-08,433;CL:0000034,1.98e-07,441;CL:0000775,7.81e-07,3 | |||
|ontology_enrichment_development_v019=CL:0002057;3.82e-27;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002371!5.41e-09!80;UBERON:0002193!8.22e-09!112;UBERON:0002390!1.77e-08!102;UBERON:0003061!1.77e-08!102;UBERON:0001474!2.30e-08!86;UBERON:0002405!3.52e-08!115;UBERON:0004765!7.33e-08!101;UBERON:0001434!7.33e-08!101;UBERON:0002384!5.60e-07!375 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004765,1.67e-23,90;UBERON:0002371,8.41e-23,76;UBERON:0001434,2.26e-22,100;UBERON:0001474,1.25e-21,82;UBERON:0002405,4.25e-20,93;UBERON:0002193,4.43e-19,108;UBERON:0002390,1.06e-18,98;UBERON:0003061,1.06e-18,98;UBERON:0002384,2.51e-13,371;UBERON:0002204,4.60e-13,167;UBERON:0003081,4.51e-08,203 | |||
|phase1_expression=0,0,0.140954404095971,1.0007329835313,0,0,2.53299878168311,0.631719873426831,0.261185628199839,0,0,0,0,1.60896258848061,1.65698687863958,0.672325146451775,0,0,0,0.61560529038394,0.408001382488506,0.626909442956176,0.85870796139317,0.821246550437305,0.627713197974014,0.152826811495903,0,0.0787107813136792,0.393364276848904,1.15148819429164,0.309632246632152,0,0.30120591877825,0.369754010166788,0,0,0,3.32397245119126,3.00816671205213,2.38711957787437,0.223915474239924,0,0,1.16318591023652,0.755751887377619,0,1.16214518452842,3.70051099219643,1.54853185447552,8.63077176966451,3.84241059793651,4.25668013799453,18.2715210790408,7.10033151942209,8.12558919566051,3.9530891303947,3.82068610080984,1.34834090667051,37.9544026539919,17.9720255162612,37.7208904221434,5.60747210317417,6.98122801675712,10.2293940127847,12.1887880224005,3.97169657283798,8.09668923694247,6.53246529667532,6.25779502104242,6.08128765174327,10.2917915447673,4.78760926783834,1.89877432464531,0.211255286311942,0.850417199860174,0.838634582033504,0.786300418025466,2.25265339262259,0.32145117339416,0,0,0,0,0,0,0,0,0,0,0,0.569212969109448,1.17447437874188,1.52909291250092,0,0.560508562981536,0,1.37696839079683,1.96505381374582,3.08402248499264,0.501559486172034,0.32592226663359,0,0,0.891283655081389,1.47302953737419,1.10766947291811,0,0.768547918354051,0.780356085359269,0,0,0,1.18629250529648,0.802622484269139,0,0.113309342697566,0,0.68725489096526,0.759059076058509,0.637130828648193,0,0,0.301150238155546,0,0,0,0.821127996921047,0.80642697289893,1.33720097891754,0.434473211648397,0,2.68280343881454,0,0.722878304769133,2.50668955317945,1.15877215168659,0.795285947051099,0.973269740605272,0.472674085820339,0.665188192387692,0.175669571386252,0.654895377488563,0,0,0,0,0.398873881556595,0.953962497221368,0.571994910780128,0.74291500265913,0,0,0,0,0,0.275118041940067,0.208994966536811,0,0,0,0,0,0.732186172644509,0,0,0.0892997282840798,0,0,0,0,0.183201743930407,2.63560834872127,3.87780264148325,0,0,0.25326102332916,0.264818361626438,0.860509862246441,1.06400514659507,0,1.06748995729705,0.24666754841716,0,0.269421344139376,0,0.454072282934794,0.576175924479999,0,0.936480230490962,0,0.149448680551801,0,0,0.280901613404497,0,0.122834317311768,0.103325781175765,0,0.741800787835671,0,1.43723628363248,0,0,0,0,0.30648779579902,0.150238058906597,0,0.179389635688862,0,0.211931901159562,0.300091096084402,0,0,0,0,0.0974370051611986,0,0.184099797284599,0.323292113637624,0,0.10075209822764,0,0.57978255948989,0.545492241181669,0,0,0,0,0.10366105501537,0,0,0,0.643240938192885,0,0,0.721879481669586,0.118306800039844,0,0.241011029883482,0.110293972732394,0.653638332277218,0,0,0,0,0.738155454624648,0,0,0,1.26755034821831,0.982827216677626,1.77236972004421,0,0,0,0,0,0,0.0925884451585296,0,0,0,0,0,0.144366447761074,1.38895653772983,0.761016608938393,0,0,0,0.234004265139238,0,0,0,0.141775097242386,0,0,0,0,0,5.1832028885193,4.90007841617669,6.312121671319,0.063497894292169,0,0,1.71072446022705,0,0,0,0,0,0,0.129271715757778,0,0,0,0,0.257207374262142,0,0,0.142977993658148,0,0.823240336780769,0,0,0.791951872933429,0,0,0.099972991182057,0,1.00451418286425,0,0,0,0,0,0,0.179060963239896,0.224170287987055,1.97030760201927,1.50939302401662,1.28343036279748,1.27047312111232,0,0,0.335032530668698,0.637938751653163,3.74503511973591,14.9580729602012,9.11714129559278,0.613457458595699,1.00034104211935,1.08506009479894,0,0,0.157702415033935,0.117141414992713,0,4.5481500811197,1.03473071292505,0,0,0.260650843404249,2.15381273209015,1.02943027143257,0.82707210449155,2.80428461064202,2.66818894508611,0,0,0.30239029332968,0,0,0.280660094433074,0.128139149255701,0,0,0,0,0.532685175939381,0.410635780069046,0.519254429183621,0.813472649219715,0.120859449591622,0,0.276242966807689,1.14814448164607,0.182091168006717,1.18011973463482,0.451199612907412,0.0770153371044148,0,1.46139224653261,0.105551628892876,0,0,0.431831832204279,1.54227252690289,0,0,0,0.831076008928724,0.447749509444357,0,0,0,0,0.325378394664303,3.19427136107939,0.0915694648183434,0,0,0,1.6068392984416,0.676695028044854,0.462145851343933,0.614014698904518,0.413509717453592,0.859361958946189,0.145016693914229,0.0852266274161009,0.267096106940212,1.81813406897076,0.384380134730212,0,0.2023155617111,0,0,0,0,0,0,0,0,0.372158369359667,0.316379424718726,0.953150969619124,0,0.42793898803392,0.318203247925937,0,0.179872457583315,0.274537029736055,0.117812402345686,0,0,0,0.48763373908959,0.487426979262569,0,0.136499911407986,2.54529777516683,0,0,0,0,1.15755106853338,0.655894752046633,0.202910376962704,0,0.281695602532241,0,0.0982490410131212,1.07001315444375,0,2.11107635297664,1.97576935775941,0,0,0,0,0,3.20088922641049,0,0,0,0,0.507447609232169,0,0,0,0,0,0,0,0.106824071127473,0,0,0,0,0,0,0.199579371432817,0.383010740264733,0.211673582723883,0,0,0,0,0,0.338583555603207,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.51619630252546,0,0,0,0,0,0,0,0.140669416410513,0.333926115068718,1.81284261649436,0,0.996239941255349,2.21027132424918,0,0,0.4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| ||
|short_description=p3@SOCS3 | |||
}} | }} |
Latest revision as of 21:20, 17 September 2015
Short description: | p3@SOCS3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_SOCS3_5end |
Coexpression cluster: | C0_CD14_Eosinophils_Neutrophils_Basophils_CD34_immature_Peripheral |
Association with transcript: | 365bp_to_AB006967, AF159854, BT019544, CR536497, CR541694_5end |
EntrezGene: | SOCS3 |
HGNC: | 19391 |
UniProt: | O14543Q5U0H7Q6FI39 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 3.50e-38 | 42 |
CD14-positive, CD16-negative classical monocyte | 3.50e-38 | 42 |
myeloid leukocyte | 5.72e-34 | 72 |
defensive cell | 5.95e-34 | 48 |
phagocyte | 5.95e-34 | 48 |
myeloid lineage restricted progenitor cell | 1.84e-26 | 66 |
granulocyte monocyte progenitor cell | 6.74e-26 | 67 |
monopoietic cell | 6.00e-25 | 59 |
monocyte | 6.00e-25 | 59 |
monoblast | 6.00e-25 | 59 |
promonocyte | 6.00e-25 | 59 |
leukocyte | 1.10e-24 | 136 |
macrophage dendritic cell progenitor | 8.54e-24 | 61 |
nongranular leukocyte | 9.53e-20 | 115 |
hematopoietic lineage restricted progenitor cell | 1.09e-19 | 120 |
myeloid cell | 2.65e-18 | 108 |
common myeloid progenitor | 2.65e-18 | 108 |
hematopoietic stem cell | 6.15e-17 | 168 |
hematopoietic cell | 6.81e-17 | 177 |
hematopoietic oligopotent progenitor cell | 1.90e-16 | 161 |
hematopoietic multipotent progenitor cell | 1.90e-16 | 161 |
connective tissue cell | 1.23e-13 | 361 |
mesenchymal cell | 5.98e-11 | 354 |
motile cell | 9.22e-09 | 386 |
multi fate stem cell | 2.51e-08 | 427 |
granulocyte | 5.90e-08 | 8 |
somatic stem cell | 6.21e-08 | 433 |
stem cell | 1.98e-07 | 441 |
neutrophil | 7.81e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
skeletal element | 1.67e-23 | 90 |
bone marrow | 8.41e-23 | 76 |
skeletal system | 2.26e-22 | 100 |
bone element | 1.25e-21 | 82 |
immune system | 4.25e-20 | 93 |
hemolymphoid system | 4.43e-19 | 108 |
hematopoietic system | 1.06e-18 | 98 |
blood island | 1.06e-18 | 98 |
connective tissue | 2.51e-13 | 371 |
musculoskeletal system | 4.60e-13 | 167 |
lateral plate mesoderm | 4.51e-08 | 203 |