FFCP PHASE1:Hg19::chr10:33246874..33246907,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr10:33246874..33246907,- to FFCP PHASE1:Hg19::chr10:33246874..33246907,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=3688 | |EntrezGene=3688 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6153 | |HGNC=6153 | ||
|TSSclassifier=strong | |||
|UniProt=P05556 | |UniProt=P05556 | ||
|association_with_transcript=-52bp_to_ENST00000396033,NM_133376,uc001iws.3_5end | |||
|cluster_id=chr10:33246874..33246907,- | |||
|coexpression_cluster_id=C2058 | |||
|description=CAGE_peak_2_at_ITGB1_5end | |||
|id=chr10:33246874..33246907,- | |||
|ontology_enrichment_celltype=CL:0000548!9.23e-26!679;CL:0000004!9.23e-26!679;CL:0000255!9.23e-26!679;CL:0000055!2.01e-25!180;CL:0000012!8.88e-25!682;CL:0000220!1.12e-23!246;CL:0002321!2.15e-23!248;CL:0000144!9.82e-18!625;CL:0000222!2.11e-17!119;CL:0002371!1.11e-16!591;CL:0000680!5.16e-16!57;CL:0000056!5.16e-16!57;CL:0000355!5.16e-16!57;CL:0000359!1.69e-15!32;CL:0000057!4.10e-15!75;CL:0000187!6.73e-15!54;CL:0000192!8.73e-14!42;CL:0000514!8.73e-14!42;CL:0000066!1.02e-13!254;CL:0000183!1.43e-13!59;CL:0000393!1.69e-12!60;CL:0000211!1.69e-12!60;CL:0000003!4.39e-12!722;CL:0000063!2.67e-09!578;CL:0002494!7.75e-07!16 | |||
|ontology_enrichment_celltype_v019=CL:0000359;8.49e-15;32!CL:0000192;5.17e-10;43!CL:0000187;3.19e-08;55!CL:0002494;6.32e-07;16!CL:0002334;9.99e-07;12 | |||
|ontology_enrichment_celltype_v019_2=CL:0002321,1.36e-23,250;CL:0000222,1.60e-17,121;CL:0000680,5.95e-16,58;CL:0000056,5.95e-16,58;CL:0000355,5.95e-16,58;CL:0000057,8.86e-16,76;CL:0000359,1.25e-15,32;CL:0000187,7.87e-15,55;CL:0000066,6.83e-14,253;CL:0000192,1.15e-13,43;CL:0000514,1.15e-13,43;CL:0000393,1.72e-12,61;CL:0000211,1.72e-12,61;CL:0002494,6.90e-07,16;CL:0002334,9.57e-07,12 | |||
|ontology_enrichment_development_v019=CL:0000514;5.17e-10;43!CL:0000355;2.39e-08;58 | |||
|ontology_enrichment_disease=DOID:2394!1.47e-08!14;DOID:193!5.52e-07!29;DOID:120!6.10e-07!27 | |||
|ontology_enrichment_disease_v019=DOID:2394;1.24e-08;14!DOID:193;3.75e-07;29!DOID:120;4.13e-07;27 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,1.26e-08,14;DOID:193,4.89e-07,29;DOID:120,5.41e-07,27 | |||
|ontology_enrichment_uberon=UBERON:0002100!1.22e-18!216;UBERON:0005256!1.07e-17!143;UBERON:0000914!1.22e-17!83;UBERON:0002329!1.22e-17!83;UBERON:0003077!1.22e-17!83;UBERON:0003059!1.22e-17!83;UBERON:0007282!1.22e-17!83;UBERON:0009618!1.22e-17!83;UBERON:0007285!1.22e-17!83;UBERON:0000486!2.97e-17!82;UBERON:0003914!7.72e-17!118;UBERON:0001637!7.49e-16!42;UBERON:0003509!7.49e-16!42;UBERON:0004572!7.49e-16!42;UBERON:0000490!1.38e-15!138;UBERON:0004290!2.71e-15!70;UBERON:0003104!3.25e-15!238;UBERON:0009142!3.25e-15!238;UBERON:0004872!5.08e-15!84;UBERON:0000926!7.80e-15!448;UBERON:0004120!7.80e-15!448;UBERON:0006603!7.80e-15!448;UBERON:0002049!2.05e-14!79;UBERON:0007798!2.05e-14!79;UBERON:0001981!6.25e-14!60;UBERON:0007500!6.25e-14!60;UBERON:0004537!6.25e-14!60;UBERON:0006965!6.25e-14!60;UBERON:0004573!7.40e-14!33;UBERON:0004571!7.40e-14!33;UBERON:0001134!1.19e-13!61;UBERON:0002036!1.19e-13!61;UBERON:0003082!1.19e-13!61;UBERON:0002385!3.07e-13!63;UBERON:0001015!3.07e-13!63;UBERON:0000383!3.07e-13!63;UBERON:0000055!2.75e-12!69;UBERON:0004535!9.16e-11!110;UBERON:0001009!3.22e-10!113;UBERON:0003102!2.55e-09!95;UBERON:0000467!5.16e-09!625;UBERON:0000468!6.38e-09!659;UBERON:0000480!8.29e-09!626;UBERON:0000947!1.43e-07!21;UBERON:0010191!1.43e-07!21;UBERON:0002199!3.94e-07!45;UBERON:0002416!3.94e-07!45;UBERON:0000475!4.63e-07!365 | |||
|ontology_enrichment_uberon_v019=UBERON:0004573;9.58e-13;33!UBERON:0004571;9.58e-13;33!UBERON:0001637;2.68e-11;42!UBERON:0003509;2.68e-11;42!UBERON:0004572;2.68e-11;42!UBERON:0007500;2.42e-08;56!UBERON:0001981;2.42e-08;56!UBERON:0004537;2.42e-08;56!UBERON:0000947;1.26e-07;21!UBERON:0010191;1.26e-07;21!UBERON:0000055;6.83e-07;65!UBERON:0002049;7.22e-07;75!UBERON:0007798;7.22e-07;75 | |||
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| ||
|short_description=p2@ITGB1 | |||
}} | }} |
Latest revision as of 00:38, 18 September 2015
Short description: | p2@ITGB1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_ITGB1_5end |
Coexpression cluster: | C2058_Smooth_basal_mesenchymal_tubular_Renal_lung_Urothelial |
Association with transcript: | -52bp_to_ENST00000396033, NM_133376, uc001iws.3_5end |
EntrezGene: | ITGB1 |
HGNC: | 6153 |
UniProt: | P05556 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic cell | 1.36e-23 | 250 |
mesodermal cell | 1.60e-17 | 121 |
muscle precursor cell | 5.95e-16 | 58 |
myoblast | 5.95e-16 | 58 |
multi-potent skeletal muscle stem cell | 5.95e-16 | 58 |
fibroblast | 8.86e-16 | 76 |
vascular associated smooth muscle cell | 1.25e-15 | 32 |
muscle cell | 7.87e-15 | 55 |
epithelial cell | 6.83e-14 | 253 |
smooth muscle cell | 1.15e-13 | 43 |
smooth muscle myoblast | 1.15e-13 | 43 |
electrically responsive cell | 1.72e-12 | 61 |
electrically active cell | 1.72e-12 | 61 |
cardiocyte | 6.90e-07 | 16 |
preadipocyte | 9.57e-07 | 12 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 1.26e-08 | 14 |
reproductive organ cancer | 4.89e-07 | 29 |
female reproductive organ cancer | 5.41e-07 | 27 |