FFCP PHASE1:Hg19::chr1:40627108..40627113,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=6018 | |EntrezGene=6018 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10025 | |HGNC=10025 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=36bp_to_HQ258544_5end | |association_with_transcript=36bp_to_HQ258544_5end | ||
|cluster_id=chr1:40627108..40627113,+ | |||
|coexpression_cluster_id=C17 | |||
|description=CAGE_peak_3_at_RLF_5end | |description=CAGE_peak_3_at_RLF_5end | ||
|id=chr1:40627108..40627113,+ | |id=chr1:40627108..40627113,+ | ||
|ontology_enrichment_celltype=CL:0000738!1.66e-17!140;CL:0000766!8.42e-16!76;CL:0002031!2.10e-15!124;CL:0000557!1.10e-14!71;CL:0000860!5.46e-14!45;CL:0002057!7.09e-14!42;CL:0000988!3.37e-13!182;CL:0002032!4.06e-13!165;CL:0000837!4.06e-13!165;CL:0000037!7.21e-13!172;CL:0000566!7.21e-13!172;CL:0000839!3.08e-12!70;CL:0002009!3.03e-11!65;CL:0002087!4.76e-11!119;CL:0000763!5.94e-11!112;CL:0000049!5.94e-11!112;CL:0002194!2.77e-09!63;CL:0000576!2.77e-09!63;CL:0000040!2.77e-09!63;CL:0000559!2.77e-09!63;CL:0002274!1.78e-07!5;CL:0000457!1.78e-07!5;CL:0002191!1.78e-07!5;CL:0000097!1.78e-07!5;CL:0000831!1.78e-07!5;CL:0002028!1.78e-07!5 | |ontology_enrichment_celltype=CL:0000738!1.66e-17!140;CL:0000766!8.42e-16!76;CL:0002031!2.10e-15!124;CL:0000557!1.10e-14!71;CL:0000860!5.46e-14!45;CL:0002057!7.09e-14!42;CL:0000988!3.37e-13!182;CL:0002032!4.06e-13!165;CL:0000837!4.06e-13!165;CL:0000037!7.21e-13!172;CL:0000566!7.21e-13!172;CL:0000839!3.08e-12!70;CL:0002009!3.03e-11!65;CL:0002087!4.76e-11!119;CL:0000763!5.94e-11!112;CL:0000049!5.94e-11!112;CL:0002194!2.77e-09!63;CL:0000576!2.77e-09!63;CL:0000040!2.77e-09!63;CL:0000559!2.77e-09!63;CL:0002274!1.78e-07!5;CL:0000457!1.78e-07!5;CL:0002191!1.78e-07!5;CL:0000097!1.78e-07!5;CL:0000831!1.78e-07!5;CL:0002028!1.78e-07!5 | ||
|ontology_enrichment_celltype_v019=CL:0000097;1.33e-32;5!CL:0001014;5.15e-21;2!CL:0001016;5.15e-21;2!CL:0000163;1.18e-18;9!CL:0000453;3.10e-09;5!CL:0000840;6.55e-08;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0000097,1.70e-32,5;CL:0002028,1.70e-32,5;CL:0001014,4.66e-21,2;CL:0001016,4.66e-21,2;CL:0000163,1.35e-18,9;CL:0000557,3.48e-15,67;CL:0000839,3.87e-10,66;CL:0000763,1.03e-09,108;CL:0000049,1.03e-09,108;CL:0000766,2.34e-09,72;CL:0000453,2.97e-09,5;CL:0002031,8.28e-09,120;CL:0000840,6.34e-08,5;CL:0001029,6.34e-08,5;CL:0000738,7.64e-08,136 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001474!3.32e-14!86;UBERON:0002371!1.79e-13!80;UBERON:0002390!1.94e-12!102;UBERON:0003061!1.94e-12!102;UBERON:0002193!2.16e-11!112;UBERON:0004765!6.63e-11!101;UBERON:0001434!6.63e-11!101;UBERON:0002405!3.26e-09!115 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,1.72e-13,76;UBERON:0001474,1.45e-12,82;UBERON:0004765,1.62e-11,90;UBERON:0002405,3.61e-11,93;UBERON:0002390,1.23e-10,98;UBERON:0003061,1.23e-10,98;UBERON:0001434,1.95e-10,100;UBERON:0002193,1.03e-09,108 | |||
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| ||
|short_description=p3@RLF | |short_description=p3@RLF | ||
}} | }} |
Latest revision as of 00:50, 18 September 2015
Short description: | p3@RLF |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_RLF_5end |
Coexpression cluster: | C17_Mast_CD14_Monocytederived_Lymphatic_Smooth_mesenchymal_Macrophage |
Association with transcript: | 36bp_to_HQ258544_5end |
EntrezGene: | RLF |
HGNC: | 10025 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mast cell | 1.70e-32 | 5 |
basophil mast progenitor cell | 1.70e-32 | 5 |
CD1a-positive Langerhans cell | 4.66e-21 | 2 |
immature CD1a-positive Langerhans cell | 4.66e-21 | 2 |
endocrine cell | 1.35e-18 | 9 |
granulocyte monocyte progenitor cell | 3.48e-15 | 67 |
myeloid lineage restricted progenitor cell | 3.87e-10 | 66 |
myeloid cell | 1.03e-09 | 108 |
common myeloid progenitor | 1.03e-09 | 108 |
myeloid leukocyte | 2.34e-09 | 72 |
Langerhans cell | 2.97e-09 | 5 |
hematopoietic lineage restricted progenitor cell | 8.28e-09 | 120 |
immature conventional dendritic cell | 6.34e-08 | 5 |
common dendritic progenitor | 6.34e-08 | 5 |
leukocyte | 7.64e-08 | 136 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 1.72e-13 | 76 |
bone element | 1.45e-12 | 82 |
skeletal element | 1.62e-11 | 90 |
immune system | 3.61e-11 | 93 |
hematopoietic system | 1.23e-10 | 98 |
blood island | 1.23e-10 | 98 |
skeletal system | 1.95e-10 | 100 |
hemolymphoid system | 1.03e-09 | 108 |