FFCP PHASE1:Hg19::chr2:65593835..65593877,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=200734 | |EntrezGene=200734 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=17722 | |HGNC=17722 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=8bp_to_ENST00000474228_5end | |association_with_transcript=8bp_to_ENST00000474228_5end | ||
|cluster_id=chr2:65593835..65593877,- | |||
|coexpression_cluster_id=C1444 | |coexpression_cluster_id=C1444 | ||
|description=CAGE_peak_4_at_SPRED2_5end | |description=CAGE_peak_4_at_SPRED2_5end | ||
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|ontology_enrichment_celltype=CL:0000055!2.88e-08!180;CL:0000680!2.07e-07!57;CL:0000056!2.07e-07!57;CL:0000355!2.07e-07!57;CL:0002057!2.49e-07!42;CL:0000359!3.37e-07!32;CL:0000187!6.49e-07!54;CL:0000183!6.65e-07!59 | |ontology_enrichment_celltype=CL:0000055!2.88e-08!180;CL:0000680!2.07e-07!57;CL:0000056!2.07e-07!57;CL:0000355!2.07e-07!57;CL:0002057!2.49e-07!42;CL:0000359!3.37e-07!32;CL:0000187!6.49e-07!54;CL:0000183!6.65e-07!59 | ||
|ontology_enrichment_celltype_v019=CL:0000860;8.43e-14;33!CL:0002057;8.43e-14;33!CL:0000473;4.09e-11;39!CL:0000234;4.09e-11;39!CL:0000453;3.17e-08;5!CL:0000359;4.93e-07;32!CL:0000990;7.78e-07;8 | |ontology_enrichment_celltype_v019=CL:0000860;8.43e-14;33!CL:0002057;8.43e-14;33!CL:0000473;4.09e-11;39!CL:0000234;4.09e-11;39!CL:0000453;3.17e-08;5!CL:0000359;4.93e-07;32!CL:0000990;7.78e-07;8 | ||
|ontology_enrichment_celltype_v019_2=CL:0000860,1.90e-10,42;CL:0002057,1.90e-10,42;CL:0000473,5.36e-10,48;CL:0000234,5.36e-10,48;CL:0002009,4.26e-09,61;CL:0000557,2.30e-08,67;CL:0000453,3.28e-08,5;CL:0002194,9.85e-08,59;CL:0000576,9.85e-08,59;CL:0000040,9.85e-08,59;CL:0000559,9.85e-08,59;CL:0000723,2.61e-07,433;CL:0000048,4.07e-07,427;CL:0000359,4.26e-07,32;CL:0000839,6.97e-07,66 | |||
|ontology_enrichment_development_v019=CL:0002057;6.65e-08;42 | |ontology_enrichment_development_v019=CL:0002057;6.65e-08;42 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002204!2.91e-11!167;UBERON:0000923!1.22e-09!604;UBERON:0005291!1.22e-09!604;UBERON:0006598!1.22e-09!604;UBERON:0002532!1.22e-09!604;UBERON:0002050!1.77e-09!605;UBERON:0005423!1.77e-09!605;UBERON:0001950!4.19e-09!20;UBERON:0000467!4.55e-09!625;UBERON:0000480!6.55e-09!626;UBERON:0000956!8.22e-09!25;UBERON:0000203!8.22e-09!25;UBERON:0002619!1.09e-08!22;UBERON:0000922!1.29e-08!612;UBERON:0000468!3.34e-08!659;UBERON:0000914!1.13e-07!83;UBERON:0002329!1.13e-07!83;UBERON:0003077!1.13e-07!83;UBERON:0003059!1.13e-07!83;UBERON:0007282!1.13e-07!83;UBERON:0009618!1.13e-07!83;UBERON:0007285!1.13e-07!83;UBERON:0000479!1.61e-07!787;UBERON:0000486!1.65e-07!82;UBERON:0001869!2.52e-07!32;UBERON:0004290!6.36e-07!70;UBERON:0001893!9.05e-07!34 | |ontology_enrichment_uberon=UBERON:0002204!2.91e-11!167;UBERON:0000923!1.22e-09!604;UBERON:0005291!1.22e-09!604;UBERON:0006598!1.22e-09!604;UBERON:0002532!1.22e-09!604;UBERON:0002050!1.77e-09!605;UBERON:0005423!1.77e-09!605;UBERON:0001950!4.19e-09!20;UBERON:0000467!4.55e-09!625;UBERON:0000480!6.55e-09!626;UBERON:0000956!8.22e-09!25;UBERON:0000203!8.22e-09!25;UBERON:0002619!1.09e-08!22;UBERON:0000922!1.29e-08!612;UBERON:0000468!3.34e-08!659;UBERON:0000914!1.13e-07!83;UBERON:0002329!1.13e-07!83;UBERON:0003077!1.13e-07!83;UBERON:0003059!1.13e-07!83;UBERON:0007282!1.13e-07!83;UBERON:0009618!1.13e-07!83;UBERON:0007285!1.13e-07!83;UBERON:0000479!1.61e-07!787;UBERON:0000486!1.65e-07!82;UBERON:0001869!2.52e-07!32;UBERON:0004290!6.36e-07!70;UBERON:0001893!9.05e-07!34 | ||
|ontology_enrichment_uberon_v019=UBERON:0001950;1.61e-15;20!UBERON:0002619;3.60e-15;22!UBERON:0000956;1.07e-12;25!UBERON:0000203;1.07e-12;25!UBERON:0001869;2.87e-10;32!UBERON:0001893;2.22e-09;34!UBERON:0002791;6.44e-09;32!UBERON:0003528;2.99e-08;34!UBERON:0002020;2.99e-08;34!UBERON:0000200;3.74e-08;6 | |ontology_enrichment_uberon_v019=UBERON:0001950;1.61e-15;20!UBERON:0002619;3.60e-15;22!UBERON:0000956;1.07e-12;25!UBERON:0000203;1.07e-12;25!UBERON:0001869;2.87e-10;32!UBERON:0001893;2.22e-09;34!UBERON:0002791;6.44e-09;32!UBERON:0003528;2.99e-08;34!UBERON:0002020;2.99e-08;34!UBERON:0000200;3.74e-08;6 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0001950,5.55e-16,20;UBERON:0002619,1.12e-15,22;UBERON:0000956,3.97e-13,25;UBERON:0000203,3.97e-13,25;UBERON:0002204,4.79e-12,167;UBERON:0001869,1.06e-11,32;UBERON:0001893,1.20e-10,34;UBERON:0002791,2.60e-10,32;UBERON:0003528,2.27e-09,34;UBERON:0002020,2.27e-09,34;UBERON:0004765,1.08e-08,90;UBERON:0002371,1.26e-08,76;UBERON:0000200,3.73e-08,6;UBERON:0001434,5.93e-08,100;UBERON:0001474,6.51e-08,82;UBERON:0002780,8.11e-08,41;UBERON:0001890,8.11e-08,41;UBERON:0003080,8.11e-08,41;UBERON:0006240,8.11e-08,41;UBERON:0000923,7.46e-07,560;UBERON:0010316,7.46e-07,560;UBERON:0005291,7.46e-07,560;UBERON:0006598,7.46e-07,560;UBERON:0010317,7.46e-07,560;UBERON:0002532,7.46e-07,560 | |||
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| ||
|short_description=p4@SPRED2 | |short_description=p4@SPRED2 | ||
}} | }} |
Latest revision as of 00:52, 18 September 2015
Short description: | p4@SPRED2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_SPRED2_5end |
Coexpression cluster: | C1444_immature_migratory_CD14_amniotic_Eosinophils_CD19_Neutrophils |
Association with transcript: | 8bp_to_ENST00000474228_5end |
EntrezGene: | SPRED2 |
HGNC: | 17722 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 1.90e-10 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.90e-10 | 42 |
defensive cell | 5.36e-10 | 48 |
phagocyte | 5.36e-10 | 48 |
macrophage dendritic cell progenitor | 4.26e-09 | 61 |
granulocyte monocyte progenitor cell | 2.30e-08 | 67 |
Langerhans cell | 3.28e-08 | 5 |
monopoietic cell | 9.85e-08 | 59 |
monocyte | 9.85e-08 | 59 |
monoblast | 9.85e-08 | 59 |
promonocyte | 9.85e-08 | 59 |
somatic stem cell | 2.61e-07 | 433 |
multi fate stem cell | 4.07e-07 | 427 |
vascular associated smooth muscle cell | 4.26e-07 | 32 |
myeloid lineage restricted progenitor cell | 6.97e-07 | 66 |
Ontology term | p-value | n |
---|---|---|
neocortex | 5.55e-16 | 20 |
regional part of cerebral cortex | 1.12e-15 | 22 |
cerebral cortex | 3.97e-13 | 25 |
pallium | 3.97e-13 | 25 |
musculoskeletal system | 4.79e-12 | 167 |
cerebral hemisphere | 1.06e-11 | 32 |
telencephalon | 1.20e-10 | 34 |
regional part of telencephalon | 2.60e-10 | 32 |
brain grey matter | 2.27e-09 | 34 |
gray matter | 2.27e-09 | 34 |
skeletal element | 1.08e-08 | 90 |
bone marrow | 1.26e-08 | 76 |
gyrus | 3.73e-08 | 6 |
skeletal system | 5.93e-08 | 100 |
bone element | 6.51e-08 | 82 |
regional part of forebrain | 8.11e-08 | 41 |
forebrain | 8.11e-08 | 41 |
anterior neural tube | 8.11e-08 | 41 |
future forebrain | 8.11e-08 | 41 |
germ layer | 7.46e-07 | 560 |
germ layer / neural crest | 7.46e-07 | 560 |
embryonic tissue | 7.46e-07 | 560 |
presumptive structure | 7.46e-07 | 560 |
germ layer / neural crest derived structure | 7.46e-07 | 560 |
epiblast (generic) | 7.46e-07 | 560 |