FFCP PHASE1:Hg19::chr6:33111201..33111222,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(5 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene= | |EntrezGene= | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |||
|HGNC=19393 | |HGNC=19393 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-99bp_to_ENST00000454398_5end | |association_with_transcript=-99bp_to_ENST00000454398_5end | ||
|cluster_id=chr6:33111201..33111222,- | |||
|coexpression_cluster_id=C166 | |coexpression_cluster_id=C166 | ||
|description=CAGE_peak_1_at_HLA-DPA3_5end | |description=CAGE_peak_1_at_HLA-DPA3_5end | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype=CL:0002009!9.30e-23!65;CL:0000763!8.18e-22!112;CL:0000049!8.18e-22!112;CL:0002194!5.86e-21!63;CL:0000576!5.86e-21!63;CL:0000040!5.86e-21!63;CL:0000559!5.86e-21!63;CL:0000557!1.72e-20!71;CL:0000990!1.34e-19!8;CL:0000839!1.76e-18!70;CL:0000766!1.03e-16!76;CL:0000453!1.61e-16!5;CL:0000451!6.31e-16!10;CL:0002619!1.14e-15!3;CL:0002032!2.69e-14!165;CL:0000837!2.69e-14!165;CL:0000037!1.76e-13!172;CL:0000566!1.76e-13!172;CL:0000738!2.67e-13!140;CL:0000235!8.54e-13!10;CL:0000988!2.01e-12!182;CL:0002031!3.32e-11!124;CL:0002087!1.73e-10!119;CL:0000840!5.24e-08!5;CL:0001029!5.24e-08!5 | |ontology_enrichment_celltype=CL:0002009!9.30e-23!65;CL:0000763!8.18e-22!112;CL:0000049!8.18e-22!112;CL:0002194!5.86e-21!63;CL:0000576!5.86e-21!63;CL:0000040!5.86e-21!63;CL:0000559!5.86e-21!63;CL:0000557!1.72e-20!71;CL:0000990!1.34e-19!8;CL:0000839!1.76e-18!70;CL:0000766!1.03e-16!76;CL:0000453!1.61e-16!5;CL:0000451!6.31e-16!10;CL:0002619!1.14e-15!3;CL:0002032!2.69e-14!165;CL:0000837!2.69e-14!165;CL:0000037!1.76e-13!172;CL:0000566!1.76e-13!172;CL:0000738!2.67e-13!140;CL:0000235!8.54e-13!10;CL:0000988!2.01e-12!182;CL:0002031!3.32e-11!124;CL:0002087!1.73e-10!119;CL:0000840!5.24e-08!5;CL:0001029!5.24e-08!5 | ||
|ontology_enrichment_celltype_v019=CL:0000235;4.49e-91;6!CL:0000453;1.85e-18;5!CL:0000473;9.65e-14;39!CL:0000234;9.65e-14;39!CL:0000990;1.04e-10;8!CL:0000451;6.23e-09;10!CL:0002619;8.96e-09;3 | |ontology_enrichment_celltype_v019=CL:0000235;4.49e-91;6!CL:0000453;1.85e-18;5!CL:0000473;9.65e-14;39!CL:0000234;9.65e-14;39!CL:0000990;1.04e-10;8!CL:0000451;6.23e-09;10!CL:0002619;8.96e-09;3 | ||
|ontology_enrichment_celltype_v019_2=CL:0000235,5.41e-91,6;CL:0000453,1.62e-18,5;CL:0000763,3.81e-16,108;CL:0000049,3.81e-16,108;CL:0002194,2.90e-13,59;CL:0000576,2.90e-13,59;CL:0000040,2.90e-13,59;CL:0000559,2.90e-13,59;CL:0002009,7.76e-13,61;CL:0000839,7.03e-12,66;CL:0000557,1.05e-11,67;CL:0000473,1.15e-11,48;CL:0000234,1.15e-11,48;CL:0000766,6.67e-11,72;CL:0002032,8.68e-11,161;CL:0000837,8.68e-11,161;CL:0000990,9.69e-11,8;CL:0000037,2.50e-10,168;CL:0000738,4.28e-10,136;CL:0000988,8.62e-10,177;CL:0000451,5.87e-09,10;CL:0002619,8.96e-09,3;CL:0002087,7.83e-07,115 | |||
|ontology_enrichment_development_v019=CL:0000049;6.84e-08;108 | |ontology_enrichment_development_v019=CL:0000049;6.84e-08;108 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002371!1.01e-17!80;UBERON:0001474!3.39e-16!86;UBERON:0002390!1.41e-14!102;UBERON:0003061!1.41e-14!102;UBERON:0002193!2.37e-14!112;UBERON:0002405!7.42e-14!115;UBERON:0004765!3.57e-13!101;UBERON:0001434!3.57e-13!101;UBERON:0002204!3.89e-08!167 | |ontology_enrichment_uberon=UBERON:0002371!1.01e-17!80;UBERON:0001474!3.39e-16!86;UBERON:0002390!1.41e-14!102;UBERON:0003061!1.41e-14!102;UBERON:0002193!2.37e-14!112;UBERON:0002405!7.42e-14!115;UBERON:0004765!3.57e-13!101;UBERON:0001434!3.57e-13!101;UBERON:0002204!3.89e-08!167 | ||
|ontology_enrichment_uberon_v019= | |ontology_enrichment_uberon_v019= | ||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,2.46e-10,76;UBERON:0001474,1.38e-09,82;UBERON:0004765,9.75e-09,90;UBERON:0002405,1.86e-08,93;UBERON:0002390,5.03e-08,98;UBERON:0003061,5.03e-08,98;UBERON:0001434,7.28e-08,100;UBERON:0002193,2.80e-07,108 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.447830948479849,5.18229865630367,0.515151135268373,0,0,0,0,0,0,0,0.256160706529101,0,0,0,0,0.188242339542605,0,0,0,0.641858054152187,0,0,0,0,0.580418477257168,0.56738522469114,0,0.251248665256743,0,0,0.605399502633369,0.368277635987565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.560508562981536,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0.696518949197069,0.26591592103773,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.23108503043699,6.55211942389866,1.48631162288728,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.64871341923571,3.51579964002488,0,0,0,0,0,0,0,0,0,0,0.128343036279748,0,0,0,0.335032530668698,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.202182481573316,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.59873811429845,0,0,0,0,0,0,2.50634477090067,0,0,0,0,0,0,0,0,0.390776190804081,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.140669416410513,0,0,0,0.19924798825107,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0969890164884194,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.77380195455795,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106787412567695,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.53318401491205,0.531459361253452,1.79921933681429,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.425149840203366,0.123935764259002,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0752103283492573,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.102662806856247,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.187967835959707,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0636471582781649,0,0,0,0.0673520530145875,0.0717222053926763,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.447830948479849,5.18229865630367,0.515151135268373,0,0,0,0,0,0,0,0.256160706529101,0,0,0,0,0.188242339542605,0,0,0,0.641858054152187,0,0,0,0,0.580418477257168,0.56738522469114,0,0.251248665256743,0,0,0.605399502633369,0.368277635987565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.560508562981536,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0.696518949197069,0.26591592103773,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.23108503043699,6.55211942389866,1.48631162288728,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.64871341923571,3.51579964002488,0,0,0,0,0,0,0,0,0,0,0.128343036279748,0,0,0,0.335032530668698,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.202182481573316,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.59873811429845,0,0,0,0,0,0,2.50634477090067,0,0,0,0,0,0,0,0,0.390776190804081,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.140669416410513,0,0,0,0.19924798825107,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0969890164884194,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.77380195455795,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106787412567695,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.53318401491205,0.531459361253452,1.79921933681429,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.425149840203366,0.123935764259002,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0752103283492573,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.102662806856247,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.187967835959707,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0636471582781649,0,0,0,0.0673520530145875,0.0717222053926763,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p1@HLA-DPA3 | |short_description=p1@HLA-DPA3 | ||
}} | }} |
Latest revision as of 05:53, 18 September 2015
Short description: | p1@HLA-DPA3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_HLA-DPA3_5end |
Coexpression cluster: | C166_Macrophage_Monocytederived_Dendritic_adipose_lymph_CD14_lung |
Association with transcript: | -99bp_to_ENST00000454398_5end |
EntrezGene: | NA |
HGNC: | 19393 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
macrophage | 5.41e-91 | 6 |
Langerhans cell | 1.62e-18 | 5 |
myeloid cell | 3.81e-16 | 108 |
common myeloid progenitor | 3.81e-16 | 108 |
monopoietic cell | 2.90e-13 | 59 |
monocyte | 2.90e-13 | 59 |
monoblast | 2.90e-13 | 59 |
promonocyte | 2.90e-13 | 59 |
macrophage dendritic cell progenitor | 7.76e-13 | 61 |
myeloid lineage restricted progenitor cell | 7.03e-12 | 66 |
granulocyte monocyte progenitor cell | 1.05e-11 | 67 |
defensive cell | 1.15e-11 | 48 |
phagocyte | 1.15e-11 | 48 |
myeloid leukocyte | 6.67e-11 | 72 |
hematopoietic oligopotent progenitor cell | 8.68e-11 | 161 |
hematopoietic multipotent progenitor cell | 8.68e-11 | 161 |
conventional dendritic cell | 9.69e-11 | 8 |
hematopoietic stem cell | 2.50e-10 | 168 |
leukocyte | 4.28e-10 | 136 |
hematopoietic cell | 8.62e-10 | 177 |
dendritic cell | 5.87e-09 | 10 |
adult endothelial progenitor cell | 8.96e-09 | 3 |
nongranular leukocyte | 7.83e-07 | 115 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 2.46e-10 | 76 |
bone element | 1.38e-09 | 82 |
skeletal element | 9.75e-09 | 90 |
immune system | 1.86e-08 | 93 |
hematopoietic system | 5.03e-08 | 98 |
blood island | 5.03e-08 | 98 |
skeletal system | 7.28e-08 | 100 |
hemolymphoid system | 2.80e-07 | 108 |