FFCP PHASE1:Hg19::chr2:176032843..176032941,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DPIdataset= | |DHSsupport=supported | ||
|DPIdataset=robust | |||
|EntrezGene=1386 | |EntrezGene=1386 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | ||
|HGNC=784 | |HGNC=784 | ||
|TSSclassifier= | |TSSclassifier=strong | ||
|UniProt=P15336,Q3B7B7,A4D7U5,Q96JT8,Q8TAR1,F2Z2K2,E9PBF9,E9PEK8,A4D7V1,F5H629,B3KY57,A4D7V5 | |UniProt=P15336,Q3B7B7,A4D7U5,Q96JT8,Q8TAR1,F2Z2K2,E9PBF9,E9PEK8,A4D7V1,F5H629,B3KY57,A4D7V5 | ||
|association_with_transcript=0bp_to_ENST00000264110,ENST00000345739,ENST00000392543,ENST00000392544,ENST00000409499,ENST00000409635,ENST00000409833,ENST00000413123,ENST00000415955,ENST00000417080,ENST00000421438,ENST00000426833,ENST00000428760,ENST00000429579,ENST00000435231,ENST00000456655,ENST00000487334,ENST00000538946,ENST00000542046,NM_001880,uc002ujl.2,uc002ujm.2,uc002ujn.2,uc002ujo.2,uc002ujp.2,uc002ujq.2,uc002ujr.2,uc002ujs.2,uc002ujt.2,uc002uju.2,uc002ujv.2,uc002ujw.1,uc002ujx.1,uc002ujy.1,uc010fqu.2,uc010fqv.2_5end | |association_with_transcript=0bp_to_ENST00000264110,ENST00000345739,ENST00000392543,ENST00000392544,ENST00000409499,ENST00000409635,ENST00000409833,ENST00000413123,ENST00000415955,ENST00000417080,ENST00000421438,ENST00000426833,ENST00000428760,ENST00000429579,ENST00000435231,ENST00000456655,ENST00000487334,ENST00000538946,ENST00000542046,NM_001880,uc002ujl.2,uc002ujm.2,uc002ujn.2,uc002ujo.2,uc002ujp.2,uc002ujq.2,uc002ujr.2,uc002ujs.2,uc002ujt.2,uc002uju.2,uc002ujv.2,uc002ujw.1,uc002ujx.1,uc002ujy.1,uc010fqu.2,uc010fqv.2_5end | ||
|cluster_id=chr2:176032843..176032941,- | |||
|description=CAGE_peak_1_at_ATF2_5end | |description=CAGE_peak_1_at_ATF2_5end | ||
|id=chr2:176032843..176032941,- | |id=chr2:176032843..176032941,- | ||
Latest revision as of 08:18, 18 September 2015
| Short description: | p1@ATF2 |
|---|---|
| Species: | Human (Homo sapiens) |
| DPI dataset: | Robust |
| TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
| DHS support(Yes/No): | Yes |
| Description: | CAGE_peak_1_at_ATF2_5end |
| Coexpression cluster: | NA |
| Association with transcript: | 0bp_to_ENST00000264110, ENST00000345739, ENST00000392543, ENST00000392544, ENST00000409499, ENST00000409635, ENST00000409833, ENST00000413123, ENST00000415955, ENST00000417080, ENST00000421438, ENST00000426833, ENST00000428760, ENST00000429579, ENST00000435231, ENST00000456655, ENST00000487334, ENST00000538946, ENST00000542046, NM_001880, uc002ujl.2, uc002ujm.2, uc002ujn.2, uc002ujo.2, uc002ujp.2, uc002ujq.2, uc002ujr.2, uc002ujs.2, uc002ujt.2, uc002uju.2, uc002ujv.2, uc002ujw.1, uc002ujx.1, uc002ujy.1, uc010fqu.2, uc010fqv.2_5end |
| EntrezGene: | ATF2 |
| HGNC: | 784 |
| UniProt: | P15336Q3B7B7A4D7U5Q96JT8Q8TAR1F2Z2K2E9PBF9E9PEK8A4D7V1F5H629B3KY57A4D7V5 |
| Genome view: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| hematopoietic stem cell | 5.08e-10 | 168 |
| leukocyte | 6.85e-10 | 136 |
| hematopoietic oligopotent progenitor cell | 1.07e-09 | 161 |
| hematopoietic multipotent progenitor cell | 1.07e-09 | 161 |
| hematopoietic cell | 3.13e-09 | 177 |
| hematopoietic lineage restricted progenitor cell | 3.79e-08 | 120 |
| lymphocyte | 1.50e-07 | 53 |
| common lymphoid progenitor | 1.50e-07 | 53 |
| lymphoid lineage restricted progenitor cell | 2.25e-07 | 52 |
| nongranular leukocyte | 3.60e-07 | 115 |
| Ontology term | p-value | n |
|---|---|---|
| adult organism | 4.74e-11 | 114 |
| regional part of forebrain | 5.36e-11 | 41 |
| forebrain | 5.36e-11 | 41 |
| anterior neural tube | 5.36e-11 | 41 |
| future forebrain | 5.36e-11 | 41 |
| central nervous system | 5.57e-11 | 81 |
| nervous system | 8.87e-11 | 89 |
| cerebral hemisphere | 1.41e-10 | 32 |
| telencephalon | 1.80e-10 | 34 |
| regional part of cerebral cortex | 4.87e-10 | 22 |
| regional part of telencephalon | 6.60e-10 | 32 |
| neocortex | 8.27e-10 | 20 |
| brain | 9.65e-10 | 68 |
| future brain | 9.65e-10 | 68 |
| regional part of nervous system | 1.16e-09 | 53 |
| regional part of brain | 1.16e-09 | 53 |
| brain grey matter | 1.34e-09 | 34 |
| gray matter | 1.34e-09 | 34 |
| neural tube | 1.50e-09 | 56 |
| neural rod | 1.50e-09 | 56 |
| future spinal cord | 1.50e-09 | 56 |
| neural keel | 1.50e-09 | 56 |
| cerebral cortex | 1.86e-09 | 25 |
| pallium | 1.86e-09 | 25 |
