FFCP PHASE1:Hg19::chr2:176969179..176969226,+: Difference between revisions
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(Created page with "{{FFCP
|id=chr2:176969179..176969226,+
|short_description=p2@HOXD11
|description=CAGE_peak_2_at_HOXD11_5end
|association_with_transcript=-23bp_to_uc010fqx.2_5end
|EntrezG...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=3237 | |EntrezGene=3237 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=5134 | |HGNC=5134 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-23bp_to_uc010fqx.2_5end | |||
|cluster_id=chr2:176969179..176969226,+ | |||
|description=CAGE_peak_2_at_HOXD11_5end | |||
|id=chr2:176969179..176969226,+ | |||
|ontology_enrichment_celltype=CL:0002620!1.65e-09!23;CL:1000497!6.71e-07!18;CL:0002518!6.71e-07!18 | |||
|ontology_enrichment_celltype_v019=CL:0002620;1.13e-07;23!CL:0000244;1.65e-07;4!CL:0000731;1.65e-07;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0002620,1.23e-07,23;CL:0000244,1.46e-07,4;CL:0000731,1.46e-07,4 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:0050687!4.55e-12!143;DOID:1749!1.00e-10!14;DOID:14566!2.51e-09!239;DOID:162!1.76e-08!235 | |||
|ontology_enrichment_disease_v019=DOID:1749;3.19e-12;14!DOID:17;1.18e-07;5!DOID:450;1.18e-07;5!DOID:66;1.18e-07;5!DOID:423;1.18e-07;5!DOID:0080000;1.18e-07;5!DOID:11722;1.18e-07;5 | |||
|ontology_enrichment_disease_v019_2=DOID:1749,3.20e-12,14;DOID:0050687,1.06e-08,143;DOID:14566,1.86e-08,239;DOID:162,7.31e-08,235;DOID:17,1.28e-07,5;DOID:450,1.28e-07,5;DOID:66,1.28e-07,5;DOID:423,1.28e-07,5;DOID:0080000,1.28e-07,5;DOID:11722,1.28e-07,5 | |||
|ontology_enrichment_uberon=UBERON:0006554!1.76e-16!44;UBERON:0001008!6.68e-16!45;UBERON:0000489!1.36e-10!32;UBERON:0003064!1.50e-10!37;UBERON:0002113!1.83e-09!27;UBERON:0003918!1.83e-09!27;UBERON:0005095!1.83e-09!27;UBERON:0007687!1.83e-09!27;UBERON:0005156!1.65e-08!59;UBERON:0000990!1.65e-08!59;UBERON:0005910!1.69e-08!6;UBERON:0004876!4.54e-08!20;UBERON:0003886!6.41e-08!63;UBERON:0000080!8.62e-08!18;UBERON:0002120!8.62e-08!18;UBERON:0004875!8.62e-08!18;UBERON:0005721!8.62e-08!18;UBERON:0005754!8.62e-08!18;UBERON:0007297!8.62e-08!18;UBERON:0002331!1.75e-07!10;UBERON:0000358!1.75e-07!10;UBERON:0000307!1.75e-07!10;UBERON:0000091!1.75e-07!10;UBERON:0000087!1.75e-07!10;UBERON:0007806!1.75e-07!10;UBERON:0008780!1.75e-07!10;UBERON:0005728!1.75e-07!10;UBERON:0000365!1.90e-07!5;UBERON:0000059!3.42e-07!11;UBERON:0000478!3.83e-07!24;UBERON:0006555!3.90e-07!17;UBERON:0005103!3.90e-07!17;UBERON:0000083!3.90e-07!17;UBERON:0009201!3.90e-07!17;UBERON:0004819!3.90e-07!17;UBERON:0006553!3.90e-07!17;UBERON:0003074!3.90e-07!17;UBERON:0003060!3.90e-07!17 | |||
|ontology_enrichment_uberon_v019=UBERON:0006554;5.53e-13;30!UBERON:0001008;5.53e-13;30!UBERON:0005910;1.33e-10;6!UBERON:0002331;1.52e-09;10!UBERON:0000365;3.08e-09;5!UBERON:0000059;1.64e-07;11!UBERON:0000489;1.91e-07;29!UBERON:0002113;7.25e-07;24!UBERON:0011143;7.25e-07;24!UBERON:0002075;9.50e-07;18 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0006554,3.89e-13,47;UBERON:0001008,1.01e-12,48;UBERON:0005910,1.15e-10,6;UBERON:0002331,1.30e-09,10;UBERON:0000358,1.30e-09,10;UBERON:0000307,1.30e-09,10;UBERON:0000091,1.30e-09,10;UBERON:0000087,1.30e-09,10;UBERON:0007010,1.30e-09,10;UBERON:0007806,1.30e-09,10;UBERON:0008780,1.30e-09,10;UBERON:0005728,1.30e-09,10;UBERON:0000365,2.73e-09,5;UBERON:0000489,8.69e-08,31;UBERON:0000059,1.53e-07,11;UBERON:0002113,3.56e-07,26;UBERON:0003918,3.56e-07,26;UBERON:0011143,3.56e-07,26;UBERON:0005095,3.56e-07,26;UBERON:0007687,3.56e-07,26;UBERON:0002075,9.02e-07,18 | |||
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| ||
|short_description=p2@HOXD11 | |||
}} | }} |
Latest revision as of 08:39, 18 September 2015
Short description: | p2@HOXD11 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_HOXD11_5end |
Coexpression cluster: | NA |
Association with transcript: | -23bp_to_uc010fqx.2_5end |
EntrezGene: | HOXD11 |
HGNC: | 5134 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
skin fibroblast | 1.23e-07 | 23 |
transitional epithelial cell | 1.46e-07 | 4 |
urothelial cell | 1.46e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
urinary system structure | 3.89e-13 | 47 |
renal system | 1.01e-12 | 48 |
transitional epithelium | 1.15e-10 | 6 |
umbilical cord | 1.30e-09 | 10 |
blastocyst | 1.30e-09 | 10 |
blastula | 1.30e-09 | 10 |
bilaminar disc | 1.30e-09 | 10 |
inner cell mass | 1.30e-09 | 10 |
cleaving embryo | 1.30e-09 | 10 |
connecting stalk | 1.30e-09 | 10 |
inner cell mass derived epiblast | 1.30e-09 | 10 |
extraembryonic mesoderm | 1.30e-09 | 10 |
urothelium | 2.73e-09 | 5 |
cavitated compound organ | 8.69e-08 | 31 |
large intestine | 1.53e-07 | 11 |
kidney | 3.56e-07 | 26 |
kidney mesenchyme | 3.56e-07 | 26 |
upper urinary tract | 3.56e-07 | 26 |
kidney rudiment | 3.56e-07 | 26 |
kidney field | 3.56e-07 | 26 |
viscus | 9.02e-07 | 18 |
Ontology term | p-value | n |
---|---|---|
squamous cell carcinoma | 3.20e-12 | 14 |
cell type cancer | 1.06e-08 | 143 |
disease of cellular proliferation | 1.86e-08 | 239 |
cancer | 7.31e-08 | 235 |
musculoskeletal system disease | 1.28e-07 | 5 |
myotonic disease | 1.28e-07 | 5 |
muscle tissue disease | 1.28e-07 | 5 |
myopathy | 1.28e-07 | 5 |
muscular disease | 1.28e-07 | 5 |
myotonic dystrophy | 1.28e-07 | 5 |