FFCP PHASE1:Hg19::chr2:177001290..177001315,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3232 | |EntrezGene=3232 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=5137 | |HGNC=5137 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-24bp_to_ENST00000459979,uc002ukr.2_5end | |association_with_transcript=-24bp_to_ENST00000459979,uc002ukr.2_5end | ||
|cluster_id=chr2:177001290..177001315,+ | |||
|description=CAGE_peak_1_at_HOXD3_5end | |description=CAGE_peak_1_at_HOXD3_5end | ||
|id=chr2:177001290..177001315,+ | |id=chr2:177001290..177001315,+ | ||
|ontology_enrichment_celltype=CL:0002620!1.24e-07!23;CL:1000449!4.69e-07!16 | |ontology_enrichment_celltype=CL:0002620!1.24e-07!23;CL:1000449!4.69e-07!16 | ||
|ontology_enrichment_celltype_v019=CL:1000449;1.90e-09;15!CL:0002139;4.34e-08;24!CL:1000497;6.50e-08;17!CL:0002518;6.50e-08;17!CL:0002681;1.70e-07;12!CL:0002584;1.70e-07;12!CL:0002078;3.09e-07;45!CL:1000507;4.39e-07;10!CL:1000494;4.39e-07;10 | |||
|ontology_enrichment_celltype_v019_2=CL:0002078,2.73e-10,45;CL:1000449,1.45e-09,15;CL:0002139,3.03e-08,24;CL:1000497,5.15e-08,17;CL:0002518,5.15e-08,17;CL:0002681,1.26e-07,12;CL:0002584,1.26e-07,12;CL:0000115,2.15e-07,36;CL:1000507,4.03e-07,10;CL:1000494,4.03e-07,10 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000489!1.49e-11!32;UBERON:0004876!5.51e-10!20;UBERON:0002113!2.80e-09!27;UBERON:0003918!2.80e-09!27;UBERON:0005095!2.80e-09!27;UBERON:0007687!2.80e-09!27;UBERON:0003887!7.38e-09!21;UBERON:0000080!1.32e-08!18;UBERON:0002120!1.32e-08!18;UBERON:0004875!1.32e-08!18;UBERON:0005721!1.32e-08!18;UBERON:0005754!1.32e-08!18;UBERON:0007297!1.32e-08!18;UBERON:0003064!1.65e-08!37;UBERON:0001008!7.13e-08!45;UBERON:0006555!7.91e-08!17;UBERON:0005103!7.91e-08!17;UBERON:0000083!7.91e-08!17;UBERON:0009201!7.91e-08!17;UBERON:0004819!7.91e-08!17;UBERON:0006553!7.91e-08!17;UBERON:0003074!7.91e-08!17;UBERON:0003060!7.91e-08!17;UBERON:0003886!1.25e-07!63;UBERON:0006554!2.51e-07!44;UBERON:0003133!2.91e-07!48;UBERON:0002097!3.73e-07!40;UBERON:0004211!4.69e-07!16;UBERON:0001285!4.69e-07!16;UBERON:0007684!4.69e-07!16;UBERON:0003220!4.69e-07!16;UBERON:0004208!4.69e-07!16;UBERON:0005156!5.37e-07!59;UBERON:0000990!5.37e-07!59;UBERON:0000058!6.12e-07!26;UBERON:0002553!6.80e-07!70 | |||
|ontology_enrichment_uberon_v019=UBERON:0000489;1.06e-12;29!UBERON:0002113;3.81e-10;24!UBERON:0011143;3.81e-10;24!UBERON:0006555;1.90e-09;15!UBERON:0004819;1.90e-09;15!UBERON:0001285;1.90e-09;15!UBERON:0007684;1.90e-09;15!UBERON:0006554;4.73e-08;30!UBERON:0001008;4.73e-08;30!UBERON:0001225;1.70e-07;12!UBERON:0008987;1.70e-07;12!UBERON:0001473;3.43e-07;8!UBERON:0004536;3.43e-07;8!UBERON:0006558;3.43e-07;8!UBERON:0004211;4.39e-07;10!UBERON:0009773;4.39e-07;10!UBERON:0001231;4.39e-07;10!UBERON:0004810;4.39e-07;10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000489,6.34e-15,31;UBERON:0002113,2.12e-12,26;UBERON:0003918,2.12e-12,26;UBERON:0011143,2.12e-12,26;UBERON:0005095,2.12e-12,26;UBERON:0007687,2.12e-12,26;UBERON:0006555,1.12e-10,16;UBERON:0004819,1.12e-10,16;UBERON:0004876,6.55e-10,11;UBERON:0004211,1.45e-09,15;UBERON:0009773,1.45e-09,15;UBERON:0001231,1.45e-09,15;UBERON:0001285,1.45e-09,15;UBERON:0007684,1.45e-09,15;UBERON:0004208,1.45e-09,15;UBERON:0005172,1.41e-08,54;UBERON:0005173,1.41e-08,54;UBERON:0002417,2.11e-08,60;UBERON:0000916,2.11e-08,60;UBERON:0003887,2.27e-08,12;UBERON:0000080,6.85e-08,9;UBERON:0002120,6.85e-08,9;UBERON:0004875,6.85e-08,9;UBERON:0005721,6.85e-08,9;UBERON:0005754,6.85e-08,9;UBERON:0007297,6.85e-08,9;UBERON:0001225,1.26e-07,12;UBERON:0008987,1.26e-07,12;UBERON:0009569,1.58e-07,112;UBERON:0001473,3.26e-07,8;UBERON:0004536,3.26e-07,8;UBERON:0006558,3.26e-07,8;UBERON:0004810,4.03e-07,10;UBERON:0001008,8.13e-07,48;UBERON:0005103,9.77e-07,8;UBERON:0000083,9.77e-07,8;UBERON:0009201,9.77e-07,8;UBERON:0006553,9.77e-07,8;UBERON:0003074,9.77e-07,8;UBERON:0003060,9.77e-07,8 | |||
|phase1_expression=4.54195948176392,3.42560838225573,0.140954404095971,3.00219895059391,0,2.61701557230111,0,0,0,0.245733936501509,0,0,0,0.247532705920093,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.619264493264304,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.43806866313962,0,0,0.722878304769133,1.50401373190767,1.73815822752988,0,1.94653948121054,0,0,0,7.53129684111848,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.208994966536811,12.4040044401278,7.82685777910763,11.3805008339988,2.81980521976403,3.80136052859256,5.85748938115607,2.20597848207521,1.62028389576352,5.89378206674926,6.96041055141126,2.92789849256638,3.06633274931766,4.74632829784064,1.46561395144326,0,0,0,0.496971951695318,0,0,0,0.709336764396714,0,0,0,0,0,0,0,0,0,0,0.570471821544449,0.448346041655403,1.64408298101271,1.13311061057692,0.702254033511242,0,0,0,0,0,6.37112953356618,5.03032699271367,0,0,0,0,0,0,0,21.7061459183523,4.27114777637135,1.48352330811693,2.40072876867522,0.824420233907511,10.8209026819164,2.23340227597908,7.59493495085698,3.31285817548075,9.59248342127635,2.11714766877288,0,10.6502877754984,1.91428986632517,0.339121184620975,0,0,0,0,0,0.348581828608555,0,0,0,7.8224766164908,1.28648187638577,5.52539685409922,0.928735856063958,0.721879481669586,0.354920400119532,0,0,0.220587945464788,0.653638332277218,0,0.674156540800822,0.196221465125346,0,0,0,0,0,0,0,0.590789906681404,0,0.491953754172454,0,0,0,0,0,0,0,0,0,0,2.7429625074604,0.462985512576611,6.46864117597634,0,0,0,0,0,0,0,0,0,0,0,0,0,0.414656231081544,0.144119953416961,0,0.507983154337352,2.67391897890794,2.34434894420094,0,0.411309970813294,3.60411669412701,2.28661146104463,0,0,0,0.904902010304444,7.15312891703765,0.845302752556,6.38251479803689,14.5610411675913,0.771622122786426,0,0.532844358032199,0,0.542621605391443,0.823240336780769,0,0,0,0,0,0,0,0,0,0,0,1.42636905040718,0.434343920002738,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.500170521059677,0,0,0,0,0,3.61135319673263,0,1.03473071292505,1.32845119707087,2.02806085395873,0,0,0,0,0,0,0,0,0,2.48107807818777,7.67309866440312,1.40330047216537,0.128139149255701,3.07024349440022,0.160853921143607,2.96836132889982,0.462629081407967,0.710246901252508,0.328508624055237,0,0.348631135379878,1.57117284469109,0.200506470303285,0.276242966807689,0,0,0.131124414959424,3.60959690325929,0.616122696835318,2.35304930753057,4.38417673959782,1.47772280450026,6.8240030442538,2.72149928442425,2.80690690932781,12.3381802152231,2.98041081298238,4.51520796469368,2.29388645740534,2.49322802678617,5.37299411333228,0,0,0,0,0,2.7821073144885,0.54941678891006,0.660075999364704,0,0,8.03419649220798,1.06337790121334,2.46477787383431,0.921022048356777,0.827019434907183,2.68550612170684,1.16013355131383,1.70453254832202,1.15741646340759,0,0,0,0,0,0,0,0.308033580176089,0,0,0,0,0,0,0,0,0,0,0,0.359744915166629,0.54907405947211,0.706874414074119,0,0,0,0,0.487426979262569,0,0.136499911407986,0,0,0,0,0,0,0,0,0,0.281695602532241,0.286822704408103,0.0982490410131212,0,0,1.68886108238131,1.97576935775941,0,0,0,0,0,1.60044461320525,0,0,0,0.229723400206959,0,0,0,0,0,0,0,0,1.70918513803957,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.73937624650712,0,0,0.852408440419239,0,0,0,0,0,0,0,0,4.5827037297746,2.48655523978033,1.51159648712566,0.306806047506464,0,0,0,0,0,2.17015492401254,0,0,0,0,0,0,0,24.649985564783,0,0,15.6015869966838,1.37897349296586,9.91455685503065,7.11862479226498,0,0,0,0,0,0,0,0.41827123283581,9.92658334698982,0,0,0,2.7161842980502,0.31900115973192,3.57230614267263,0,0,0,0,0,0,0,0,0,0,0.326465616318295,0.141353071433941,21.2060866947249,19.9052386215701,3.44984501563023,20.1639947828096,0,0,0,0.134802265961354,7.2231988256891,0,0,0,0,27.6209081994573,9.67925728389311,0,0.442306057399416,1.80388103297391,3.5253985075064,0,0,0,0,2.84609546029793,0.970722711091971,1.04135843001079,0.0979923974143777,0.261177619741208,37.0420536673104,3.26773461696071,0,0,0,1.55182426381471,11.2085280898205,0.90392296312213,0,0,0,1.17330829640882,0,2.34798294213288,0,1.44090417154106,0,0,0,0,0.235694034616795,0.407712618220842,0.313808538937,0.305994652908965,0,0,0,0,0,0,0.558564802544508,1.60412296808179,0.717873024576814,0.599037001496973,0.429226048136571,0.446342914883745,0.403100834920358,1.08089965062721,8.15471646692177,0,0,0,4.33080918664895,0,0,0,0,0,0,0,0,0,0.335434687599266,8.19579355911661,55.444499658693,0,0,0.383830394638891,2.1440859791201,0,0,4.3439968140297,0,2.61269888087527,0,0,2.04465626142506,0.226624183040251,0.146552233678082,1.32506888912221,0.129282956361551,0,0,0,0.106787412567695,0.471612915298998,1.24271716604159,0.496166021811951,0,0,1.27668251554036,3.26410682021684,1.7548292581589,1.22538230705385,1.96723578425883,0.314108192500469,0,0,0,0,0.221858103073705,1.30402446176905,0,0.249960815924213,0.606596470166591,0,0,3.27834434064817,2.75349954360568,0.447764408660622,2.33713309847224,3.88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| ||
|short_description=p1@HOXD3 | |short_description=p1@HOXD3 | ||
}} | }} |
Latest revision as of 09:20, 18 September 2015
Short description: | p1@HOXD3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_HOXD3_5end |
Coexpression cluster: | NA |
Association with transcript: | -24bp_to_ENST00000459979, uc002ukr.2_5end |
EntrezGene: | HOXD3 |
HGNC: | 5137 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
meso-epithelial cell | 2.73e-10 | 45 |
epithelial cell of nephron | 1.45e-09 | 15 |
endothelial cell of vascular tree | 3.03e-08 | 24 |
kidney cell | 5.15e-08 | 17 |
kidney epithelial cell | 5.15e-08 | 17 |
kidney cortical cell | 1.26e-07 | 12 |
renal cortical epithelial cell | 1.26e-07 | 12 |
endothelial cell | 2.15e-07 | 36 |
kidney tubule cell | 4.03e-07 | 10 |
nephron tubule epithelial cell | 4.03e-07 | 10 |