FFCP PHASE1:Hg19::chr8:49833948..49833973,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr8:49833948..49833973,-
|short_description=p2@SNAI2
|description=CAGE_peak_2_at_SNAI2_5end
|association_with_transcript=14bp_to_ENST00000020945,uc003xqp.2_5en...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=6591 | |EntrezGene=6591 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11094 | |HGNC=11094 | ||
|TSSclassifier=strong | |||
|UniProt=O43623 | |UniProt=O43623 | ||
|association_with_transcript=14bp_to_ENST00000020945,uc003xqp.2_5end | |||
|cluster_id=chr8:49833948..49833973,- | |||
|coexpression_cluster_id=C4759 | |||
|description=CAGE_peak_2_at_SNAI2_5end | |||
|id=chr8:49833948..49833973,- | |||
|ontology_enrichment_celltype=CL:0000055!1.44e-32!180;CL:0000057!6.06e-16!75;CL:0000220!5.84e-14!246;CL:0002321!1.11e-13!248;CL:0000680!1.42e-11!57;CL:0000056!1.42e-11!57;CL:0000355!1.42e-11!57;CL:0000183!5.64e-11!59;CL:0000187!2.44e-10!54;CL:0000393!1.96e-08!60;CL:0000211!1.96e-08!60;CL:0000221!3.24e-08!71;CL:0002371!1.30e-07!591;CL:0002077!2.36e-07!33 | |||
|ontology_enrichment_celltype_v019=CL:0000134;8.67e-09;55!CL:0000723;1.40e-08;61!CL:0000048;4.33e-08;58!CL:0002077;1.74e-07;34!CL:0000349;1.81e-07;19!CL:0002320;3.85e-07;188!CL:0000187;4.03e-07;55 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,6.21e-16,76;CL:0002321,1.76e-12,250;CL:0000680,1.86e-12,58;CL:0000056,1.86e-12,58;CL:0000355,1.86e-12,58;CL:0000187,3.65e-11,55;CL:0000393,7.39e-09,61;CL:0000211,7.39e-09,61;CL:0000221,3.42e-08,72;CL:0002077,3.60e-08,34;CL:0000349,1.85e-07,19;CL:0000192,8.32e-07,43;CL:0000514,8.32e-07,43 | |||
|ontology_enrichment_development_v019=CL:0000355;1.97e-07;58 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000486!3.77e-18!82;UBERON:0000475!1.14e-17!365;UBERON:0000914!7.43e-17!83;UBERON:0002329!7.43e-17!83;UBERON:0003077!7.43e-17!83;UBERON:0003059!7.43e-17!83;UBERON:0007282!7.43e-17!83;UBERON:0009618!7.43e-17!83;UBERON:0007285!7.43e-17!83;UBERON:0003102!9.76e-17!95;UBERON:0004290!1.15e-13!70;UBERON:0002100!3.14e-12!216;UBERON:0005256!6.24e-12!143;UBERON:0000481!8.39e-12!347;UBERON:0000468!1.76e-11!659;UBERON:0002199!2.86e-11!45;UBERON:0002416!2.86e-11!45;UBERON:0001134!3.56e-11!61;UBERON:0002036!3.56e-11!61;UBERON:0003082!3.56e-11!61;UBERON:0002385!7.43e-11!63;UBERON:0001015!7.43e-11!63;UBERON:0000383!7.43e-11!63;UBERON:0003104!1.84e-10!238;UBERON:0009142!1.84e-10!238;UBERON:0002097!6.08e-10!40;UBERON:0004923!8.73e-09!57;UBERON:0000467!1.17e-08!625;UBERON:0000480!1.92e-08!626;UBERON:0002050!5.31e-07!605;UBERON:0005423!5.31e-07!605;UBERON:0000922!5.99e-07!612;UBERON:0000923!9.31e-07!604;UBERON:0005291!9.31e-07!604;UBERON:0006598!9.31e-07!604;UBERON:0002532!9.31e-07!604;UBERON:0000119!9.92e-07!312 | |||
|ontology_enrichment_uberon_v019=UBERON:0002097;1.31e-08;41!UBERON:0002199;2.10e-08;46!UBERON:0002416;2.10e-08;46!UBERON:0003102;2.14e-08;50!UBERON:0004923;2.93e-07;55!UBERON:0002385;2.93e-07;31!UBERON:0001015;2.93e-07;31!UBERON:0000383;2.93e-07;31!UBERON:0002204;3.00e-07;70!UBERON:0002384;4.93e-07;198 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000486,2.70e-19,83;UBERON:0003102,4.21e-19,99;UBERON:0002329,1.27e-14,71;UBERON:0003059,1.27e-14,71;UBERON:0007282,1.27e-14,71;UBERON:0004290,1.27e-14,71;UBERON:0009618,1.27e-14,71;UBERON:0007524,1.49e-14,73;UBERON:0007503,2.48e-14,78;UBERON:0003077,5.18e-14,72;UBERON:0007285,5.18e-14,72;UBERON:0002199,2.89e-12,46;UBERON:0002416,2.89e-12,46;UBERON:0001134,5.01e-12,62;UBERON:0002036,5.01e-12,62;UBERON:0003082,5.01e-12,62;UBERON:0002385,1.10e-11,64;UBERON:0001015,1.10e-11,64;UBERON:0000383,1.10e-11,64;UBERON:0004923,4.78e-11,66;UBERON:0002097,6.96e-11,41;UBERON:0005256,1.27e-10,122;UBERON:0003104,5.16e-10,160;UBERON:0009142,5.16e-10,160;UBERON:0002100,2.47e-09,199;UBERON:0004119,1.36e-07,160;UBERON:0000925,1.36e-07,160;UBERON:0006595,1.36e-07,160 | |||
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| ||
|short_description=p2@SNAI2 | |||
}} | }} |
Latest revision as of 10:32, 18 September 2015
Short description: | p2@SNAI2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_SNAI2_5end |
Coexpression cluster: | C4759_Placental_Amniotic_Mesenchymal_bone_Myoblast_Sebocyte_glioma |
Association with transcript: | 14bp_to_ENST00000020945, uc003xqp.2_5end |
EntrezGene: | SNAI2 |
HGNC: | 11094 |
UniProt: | O43623 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 6.21e-16 | 76 |
embryonic cell | 1.76e-12 | 250 |
muscle precursor cell | 1.86e-12 | 58 |
myoblast | 1.86e-12 | 58 |
multi-potent skeletal muscle stem cell | 1.86e-12 | 58 |
muscle cell | 3.65e-11 | 55 |
electrically responsive cell | 7.39e-09 | 61 |
electrically active cell | 7.39e-09 | 61 |
ectodermal cell | 3.42e-08 | 72 |
ecto-epithelial cell | 3.60e-08 | 34 |
extraembryonic cell | 1.85e-07 | 19 |
smooth muscle cell | 8.32e-07 | 43 |
smooth muscle myoblast | 8.32e-07 | 43 |
Ontology term | p-value | n |
---|---|---|
multilaminar epithelium | 2.70e-19 | 83 |
surface structure | 4.21e-19 | 99 |
somite | 1.27e-14 | 71 |
presomitic mesoderm | 1.27e-14 | 71 |
presumptive segmental plate | 1.27e-14 | 71 |
dermomyotome | 1.27e-14 | 71 |
trunk paraxial mesoderm | 1.27e-14 | 71 |
dense mesenchyme tissue | 1.49e-14 | 73 |
epithelial vesicle | 2.48e-14 | 78 |
paraxial mesoderm | 5.18e-14 | 72 |
presumptive paraxial mesoderm | 5.18e-14 | 72 |
integument | 2.89e-12 | 46 |
integumental system | 2.89e-12 | 46 |
skeletal muscle tissue | 5.01e-12 | 62 |
striated muscle tissue | 5.01e-12 | 62 |
myotome | 5.01e-12 | 62 |
muscle tissue | 1.10e-11 | 64 |
musculature | 1.10e-11 | 64 |
musculature of body | 1.10e-11 | 64 |
organ component layer | 4.78e-11 | 66 |
skin of body | 6.96e-11 | 41 |
trunk mesenchyme | 1.27e-10 | 122 |
mesenchyme | 5.16e-10 | 160 |
entire embryonic mesenchyme | 5.16e-10 | 160 |
trunk | 2.47e-09 | 199 |
endoderm-derived structure | 1.36e-07 | 160 |
endoderm | 1.36e-07 | 160 |
presumptive endoderm | 1.36e-07 | 160 |