FFCP PHASE1:Hg19::chr6:36646510..36646519,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr6:36646510..36646519,+
|short_description=p2@CDKN1A
|description=CAGE_peak_2_at_CDKN1A_5end
|association_with_transcript=7bp_to_ENST00000478800_5end
|Entrez...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=1026 | |EntrezGene=1026 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1784 | |HGNC=1784 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=7bp_to_ENST00000478800_5end | |||
|cluster_id=chr6:36646510..36646519,+ | |||
|coexpression_cluster_id=C672 | |||
|description=CAGE_peak_2_at_CDKN1A_5end | |||
|id=chr6:36646510..36646519,+ | |||
|ontology_enrichment_celltype=CL:0002057!2.30e-23!42;CL:0002371!5.54e-23!591;CL:0000860!1.45e-20!45;CL:0000144!2.57e-20!625;CL:0000766!3.13e-19!76;CL:0002009!1.20e-18!65;CL:0000557!1.44e-18!71;CL:0000012!5.51e-18!682;CL:0000548!1.37e-17!679;CL:0000004!1.37e-17!679;CL:0000255!1.37e-17!679;CL:0002194!1.45e-17!63;CL:0000576!1.45e-17!63;CL:0000040!1.45e-17!63;CL:0000559!1.45e-17!63;CL:0000839!1.71e-16!70;CL:0000063!4.26e-14!578;CL:0000048!2.23e-13!430;CL:0000003!4.18e-13!722;CL:0000723!4.98e-13!436;CL:0000034!4.67e-12!444;CL:0002320!3.86e-11!365;CL:0000134!1.14e-10!358;CL:0000738!3.34e-10!140;CL:0000219!5.64e-08!390;CL:0000451!2.63e-07!10;CL:0000763!9.59e-07!112;CL:0000049!9.59e-07!112;CL:0002087!9.86e-07!119 | |||
|ontology_enrichment_celltype_v019=CL:0000860;7.62e-20;33!CL:0002057;7.62e-20;33!CL:0000473;3.75e-16;39!CL:0000234;3.75e-16;39!CL:0000576;4.77e-12;48!CL:0000766;2.33e-09;69!CL:0000451;1.89e-07;10 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,1.38e-23,42;CL:0002057,1.38e-23,42;CL:0000473,2.62e-23,48;CL:0000234,2.62e-23,48;CL:0000766,4.45e-21,72;CL:0002009,1.24e-20,61;CL:0000557,2.57e-20,67;CL:0002194,1.70e-19,59;CL:0000576,1.70e-19,59;CL:0000040,1.70e-19,59;CL:0000559,1.70e-19,59;CL:0000839,4.77e-18,66;CL:0000048,1.53e-14,427;CL:0000723,3.12e-14,433;CL:0000034,3.28e-13,441;CL:0002320,2.19e-12,361;CL:0000134,6.87e-12,354;CL:0000738,3.83e-11,136;CL:0000219,5.41e-09,386;CL:0000763,1.09e-07,108;CL:0000049,1.09e-07,108;CL:0002087,2.11e-07,115;CL:0000451,2.29e-07,10;CL:0002031,2.34e-07,120 | |||
|ontology_enrichment_development_v019=CL:0002057;3.85e-17;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003081!1.03e-23!216;UBERON:0002204!3.30e-17!167;UBERON:0002371!1.55e-16!80;UBERON:0001474!2.24e-16!86;UBERON:0002390!2.40e-15!102;UBERON:0003061!2.40e-15!102;UBERON:0004765!2.46e-14!101;UBERON:0001434!2.46e-14!101;UBERON:0002193!3.38e-14!112;UBERON:0000926!4.01e-14!448;UBERON:0004120!4.01e-14!448;UBERON:0006603!4.01e-14!448;UBERON:0002384!1.79e-10!375;UBERON:0002405!6.84e-10!115 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003081,5.91e-23,203;UBERON:0000926,1.88e-18,315;UBERON:0004120,1.88e-18,315;UBERON:0006603,1.88e-18,315;UBERON:0002371,4.69e-18,76;UBERON:0001474,8.33e-18,82;UBERON:0004765,1.34e-17,90;UBERON:0002204,2.30e-17,167;UBERON:0002390,1.43e-16,98;UBERON:0003061,1.43e-16,98;UBERON:0002193,2.97e-15,108;UBERON:0001434,1.04e-14,100;UBERON:0002405,3.65e-13,93;UBERON:0002384,1.14e-11,371 | |||
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| ||
|short_description=p2@CDKN1A | |||
}} | }} |
Latest revision as of 12:47, 18 September 2015
Short description: | p2@CDKN1A |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_CDKN1A_5end |
Coexpression cluster: | C672_CD14_Smooth_Mesenchymal_Placental_Fibroblast_mesenchymal_Alveolar |
Association with transcript: | 7bp_to_ENST00000478800_5end |
EntrezGene: | CDKN1A |
HGNC: | 1784 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 1.38e-23 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.38e-23 | 42 |
defensive cell | 2.62e-23 | 48 |
phagocyte | 2.62e-23 | 48 |
myeloid leukocyte | 4.45e-21 | 72 |
macrophage dendritic cell progenitor | 1.24e-20 | 61 |
granulocyte monocyte progenitor cell | 2.57e-20 | 67 |
monopoietic cell | 1.70e-19 | 59 |
monocyte | 1.70e-19 | 59 |
monoblast | 1.70e-19 | 59 |
promonocyte | 1.70e-19 | 59 |
myeloid lineage restricted progenitor cell | 4.77e-18 | 66 |
multi fate stem cell | 1.53e-14 | 427 |
somatic stem cell | 3.12e-14 | 433 |
stem cell | 3.28e-13 | 441 |
connective tissue cell | 2.19e-12 | 361 |
mesenchymal cell | 6.87e-12 | 354 |
leukocyte | 3.83e-11 | 136 |
motile cell | 5.41e-09 | 386 |
myeloid cell | 1.09e-07 | 108 |
common myeloid progenitor | 1.09e-07 | 108 |
nongranular leukocyte | 2.11e-07 | 115 |
dendritic cell | 2.29e-07 | 10 |
hematopoietic lineage restricted progenitor cell | 2.34e-07 | 120 |
Ontology term | p-value | n |
---|---|---|
lateral plate mesoderm | 5.91e-23 | 203 |
mesoderm | 1.88e-18 | 315 |
mesoderm-derived structure | 1.88e-18 | 315 |
presumptive mesoderm | 1.88e-18 | 315 |
bone marrow | 4.69e-18 | 76 |
bone element | 8.33e-18 | 82 |
skeletal element | 1.34e-17 | 90 |
musculoskeletal system | 2.30e-17 | 167 |
hematopoietic system | 1.43e-16 | 98 |
blood island | 1.43e-16 | 98 |
hemolymphoid system | 2.97e-15 | 108 |
skeletal system | 1.04e-14 | 100 |
immune system | 3.65e-13 | 93 |
connective tissue | 1.14e-11 | 371 |