FFCP PHASE1:Hg19::chr7:39663534..39663558,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=5898 | |EntrezGene=5898 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9839 | |HGNC=9839 | ||
|TSSclassifier=strong | |||
|UniProt=C9JPE8 | |UniProt=C9JPE8 | ||
|association_with_transcript=49bp_to_ENST00000436179_5end | |association_with_transcript=49bp_to_ENST00000436179_5end | ||
|cluster_id=chr7:39663534..39663558,+ | |||
|coexpression_cluster_id=C2895 | |coexpression_cluster_id=C2895 | ||
|description=CAGE_peak_5_at_RALA_5end | |description=CAGE_peak_5_at_RALA_5end | ||
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|ontology_enrichment_celltype=CL:0002139!2.59e-15!24;CL:0002371!2.13e-14!591;CL:0000071!2.88e-12!18;CL:0002546!2.88e-12!18;CL:0000222!3.95e-12!119;CL:0000115!4.35e-12!35;CL:0000144!4.42e-12!625;CL:0000548!1.98e-09!679;CL:0000004!1.98e-09!679;CL:0000255!1.98e-09!679;CL:0002078!2.67e-09!44;CL:0000048!2.78e-09!430;CL:0000723!2.83e-09!436;CL:0000359!3.39e-09!32;CL:0000012!5.13e-09!682;CL:0000034!2.00e-08!444;CL:1000413!5.20e-08!9;CL:0002057!7.16e-08!42;CL:0002009!8.47e-08!65;CL:0000860!1.26e-07!45;CL:0000192!1.31e-07!42;CL:0000514!1.31e-07!42;CL:0000680!2.24e-07!57;CL:0000056!2.24e-07!57;CL:0000355!2.24e-07!57;CL:0000213!2.82e-07!57;CL:0000215!2.82e-07!57;CL:0002494!2.86e-07!16;CL:0002194!5.38e-07!63;CL:0000576!5.38e-07!63;CL:0000040!5.38e-07!63;CL:0000559!5.38e-07!63;CL:0000220!5.40e-07!246;CL:0002321!6.28e-07!248;CL:0000557!7.34e-07!71 | |ontology_enrichment_celltype=CL:0002139!2.59e-15!24;CL:0002371!2.13e-14!591;CL:0000071!2.88e-12!18;CL:0002546!2.88e-12!18;CL:0000222!3.95e-12!119;CL:0000115!4.35e-12!35;CL:0000144!4.42e-12!625;CL:0000548!1.98e-09!679;CL:0000004!1.98e-09!679;CL:0000255!1.98e-09!679;CL:0002078!2.67e-09!44;CL:0000048!2.78e-09!430;CL:0000723!2.83e-09!436;CL:0000359!3.39e-09!32;CL:0000012!5.13e-09!682;CL:0000034!2.00e-08!444;CL:1000413!5.20e-08!9;CL:0002057!7.16e-08!42;CL:0002009!8.47e-08!65;CL:0000860!1.26e-07!45;CL:0000192!1.31e-07!42;CL:0000514!1.31e-07!42;CL:0000680!2.24e-07!57;CL:0000056!2.24e-07!57;CL:0000355!2.24e-07!57;CL:0000213!2.82e-07!57;CL:0000215!2.82e-07!57;CL:0002494!2.86e-07!16;CL:0002194!5.38e-07!63;CL:0000576!5.38e-07!63;CL:0000040!5.38e-07!63;CL:0000559!5.38e-07!63;CL:0000220!5.40e-07!246;CL:0002321!6.28e-07!248;CL:0000557!7.34e-07!71 | ||
|ontology_enrichment_celltype_v019=CL:0002139;4.13e-25;24!CL:0000071;3.17e-22;18!CL:0000115;9.71e-16;36!CL:1000413;6.94e-14;9!CL:0000359;1.55e-10;32!CL:0002078;3.71e-09;45!CL:0002544;5.39e-09;6!CL:0000860;1.25e-08;33!CL:0002057;1.25e-08;33!CL:0002543;1.43e-08;6!CL:0002539;2.14e-08;10!CL:0000213;1.13e-07;58!CL:0000215;1.13e-07;58!CL:0002166;2.58e-07;3!CL:0002618;7.46e-07;3 | |ontology_enrichment_celltype_v019=CL:0002139;4.13e-25;24!CL:0000071;3.17e-22;18!CL:0000115;9.71e-16;36!CL:1000413;6.94e-14;9!CL:0000359;1.55e-10;32!CL:0002078;3.71e-09;45!CL:0002544;5.39e-09;6!CL:0000860;1.25e-08;33!CL:0002057;1.25e-08;33!CL:0002543;1.43e-08;6!CL:0002539;2.14e-08;10!CL:0000213;1.13e-07;58!CL:0000215;1.13e-07;58!CL:0002166;2.58e-07;3!CL:0002618;7.46e-07;3 | ||
|ontology_enrichment_celltype_v019_2=CL:0002139,4.09e-25,24;CL:0000071,2.68e-22,18;CL:0002546,2.68e-22,18;CL:0000115,1.03e-18,36;CL:1000413,7.40e-14,9;CL:0002078,9.70e-14,45;CL:0000222,2.65e-13,121;CL:0000213,8.80e-12,58;CL:0000215,8.80e-12,58;CL:0000359,4.87e-11,32;CL:0002544,3.83e-09,6;CL:0000860,1.07e-08,42;CL:0002057,1.07e-08,42;CL:0002539,1.21e-08,10;CL:0002543,1.67e-08,6;CL:0002166,3.19e-07,3;CL:0000192,3.33e-07,43;CL:0000514,3.33e-07,43;CL:0000473,4.27e-07,48;CL:0000234,4.27e-07,48;CL:0002009,7.92e-07,61;CL:0002618,8.80e-07,3;CL:0002494,9.73e-07,16 | |||
|ontology_enrichment_development_v019=CL:0002546;3.17e-22;18!CL:0002057;9.12e-07;42 | |ontology_enrichment_development_v019=CL:0002546;3.17e-22;18!CL:0002057;9.12e-07;42 | ||
|ontology_enrichment_disease=DOID:2394!1.01e-08!14 | |ontology_enrichment_disease=DOID:2394!1.01e-08!14 | ||
|ontology_enrichment_disease_v019=DOID:2394;7.00e-18;14!DOID:120;8.23e-08;27!DOID:193;4.43e-07;29 | |ontology_enrichment_disease_v019=DOID:2394;7.00e-18;14!DOID:120;8.23e-08;27!DOID:193;4.43e-07;29 | ||
|ontology_enrichment_disease_v019_2=DOID:2394,5.20e-18,14;DOID:120,7.17e-08,27;DOID:193,3.91e-07,29 | |||
|ontology_enrichment_uberon=UBERON:0000055!3.08e-22!69;UBERON:0004872!2.48e-20!84;UBERON:0001981!5.43e-20!60;UBERON:0007500!5.43e-20!60;UBERON:0004537!5.43e-20!60;UBERON:0006965!5.43e-20!60;UBERON:0001637!9.94e-20!42;UBERON:0003509!9.94e-20!42;UBERON:0004572!9.94e-20!42;UBERON:0002049!1.10e-18!79;UBERON:0007798!1.10e-18!79;UBERON:0004535!6.62e-17!110;UBERON:0004573!3.64e-16!33;UBERON:0004571!3.64e-16!33;UBERON:0001009!1.03e-15!113;UBERON:0003081!5.26e-15!216;UBERON:0000926!5.81e-13!448;UBERON:0004120!5.81e-13!448;UBERON:0006603!5.81e-13!448;UBERON:0003914!6.99e-13!118;UBERON:0002204!1.68e-12!167;UBERON:0001986!2.88e-12!18;UBERON:0004638!2.88e-12!18;UBERON:0004852!2.88e-12!18;UBERON:0000947!4.20e-11!21;UBERON:0010191!4.20e-11!21;UBERON:0000487!1.36e-08!22;UBERON:0006914!2.91e-08!25;UBERON:0003915!5.20e-08!9;UBERON:0004700!5.20e-08!9;UBERON:0001917!5.20e-08!9;UBERON:0004765!7.26e-08!101;UBERON:0001434!7.26e-08!101;UBERON:0000914!9.32e-08!83;UBERON:0002329!9.32e-08!83;UBERON:0003077!9.32e-08!83;UBERON:0003059!9.32e-08!83;UBERON:0007282!9.32e-08!83;UBERON:0009618!9.32e-08!83;UBERON:0007285!9.32e-08!83;UBERON:0000467!1.03e-07!625;UBERON:0000480!1.36e-07!626;UBERON:0000486!3.66e-07!82;UBERON:0000490!6.28e-07!138 | |ontology_enrichment_uberon=UBERON:0000055!3.08e-22!69;UBERON:0004872!2.48e-20!84;UBERON:0001981!5.43e-20!60;UBERON:0007500!5.43e-20!60;UBERON:0004537!5.43e-20!60;UBERON:0006965!5.43e-20!60;UBERON:0001637!9.94e-20!42;UBERON:0003509!9.94e-20!42;UBERON:0004572!9.94e-20!42;UBERON:0002049!1.10e-18!79;UBERON:0007798!1.10e-18!79;UBERON:0004535!6.62e-17!110;UBERON:0004573!3.64e-16!33;UBERON:0004571!3.64e-16!33;UBERON:0001009!1.03e-15!113;UBERON:0003081!5.26e-15!216;UBERON:0000926!5.81e-13!448;UBERON:0004120!5.81e-13!448;UBERON:0006603!5.81e-13!448;UBERON:0003914!6.99e-13!118;UBERON:0002204!1.68e-12!167;UBERON:0001986!2.88e-12!18;UBERON:0004638!2.88e-12!18;UBERON:0004852!2.88e-12!18;UBERON:0000947!4.20e-11!21;UBERON:0010191!4.20e-11!21;UBERON:0000487!1.36e-08!22;UBERON:0006914!2.91e-08!25;UBERON:0003915!5.20e-08!9;UBERON:0004700!5.20e-08!9;UBERON:0001917!5.20e-08!9;UBERON:0004765!7.26e-08!101;UBERON:0001434!7.26e-08!101;UBERON:0000914!9.32e-08!83;UBERON:0002329!9.32e-08!83;UBERON:0003077!9.32e-08!83;UBERON:0003059!9.32e-08!83;UBERON:0007282!9.32e-08!83;UBERON:0009618!9.32e-08!83;UBERON:0007285!9.32e-08!83;UBERON:0000467!1.03e-07!625;UBERON:0000480!1.36e-07!626;UBERON:0000486!3.66e-07!82;UBERON:0000490!6.28e-07!138 | ||
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| ||
|short_description=p5@RALA | |short_description=p5@RALA | ||
}} | }} |
Latest revision as of 13:26, 18 September 2015
Short description: | p5@RALA |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_RALA_5end |
Coexpression cluster: | C2895_immature_Mallassezderived_mesenchymal_CD14_Fibroblast_migratory_Endothelial |
Association with transcript: | 49bp_to_ENST00000436179_5end |
EntrezGene: | RALA |
HGNC: | 9839 |
UniProt: | C9JPE8 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endothelial cell of vascular tree | 4.09e-25 | 24 |
blood vessel endothelial cell | 2.68e-22 | 18 |
embryonic blood vessel endothelial progenitor cell | 2.68e-22 | 18 |
endothelial cell | 1.03e-18 | 36 |
endothelial cell of artery | 7.40e-14 | 9 |
meso-epithelial cell | 9.70e-14 | 45 |
mesodermal cell | 2.65e-13 | 121 |
lining cell | 8.80e-12 | 58 |
barrier cell | 8.80e-12 | 58 |
vascular associated smooth muscle cell | 4.87e-11 | 32 |
aortic endothelial cell | 3.83e-09 | 6 |
classical monocyte | 1.07e-08 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.07e-08 | 42 |
aortic smooth muscle cell | 1.21e-08 | 10 |
vein endothelial cell | 1.67e-08 | 6 |
epithelial cell of Malassez | 3.19e-07 | 3 |
smooth muscle cell | 3.33e-07 | 43 |
smooth muscle myoblast | 3.33e-07 | 43 |
defensive cell | 4.27e-07 | 48 |
phagocyte | 4.27e-07 | 48 |
macrophage dendritic cell progenitor | 7.92e-07 | 61 |
endothelial cell of umbilical vein | 8.80e-07 | 3 |
cardiocyte | 9.73e-07 | 16 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 5.20e-18 | 14 |
female reproductive organ cancer | 7.17e-08 | 27 |
reproductive organ cancer | 3.91e-07 | 29 |