FFCP PHASE1:Hg19::chr4:74608965..74608975,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr4:74608965..74608975,+
|short_description=p12@IL8
|description=CAGE_peak_12_at_IL8_5end
|association_with_transcript=110bp_to_AJ227913_5end
|EntrezGene=3576...") |
No edit summary |
||
(11 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=3576 | |EntrezGene=3576 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=6025 | |HGNC=6025 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=110bp_to_AJ227913_5end | |||
|cluster_id=chr4:74608965..74608975,+ | |||
|coexpression_cluster_id=C0 | |||
|description=CAGE_peak_12_at_IL8_5end | |||
|id=chr4:74608965..74608975,+ | |||
|ontology_enrichment_celltype=CL:0002057!4.33e-46!42;CL:0000766!1.42e-44!76;CL:0000860!2.01e-42!45;CL:0002194!6.91e-34!63;CL:0000576!6.91e-34!63;CL:0000040!6.91e-34!63;CL:0000559!6.91e-34!63;CL:0002009!1.43e-32!65;CL:0000839!1.32e-29!70;CL:0000557!4.59e-29!71;CL:0000763!1.14e-26!112;CL:0000049!1.14e-26!112;CL:0000738!7.86e-23!140;CL:0000094!5.43e-20!8;CL:0002087!3.73e-17!119;CL:0000037!1.92e-16!172;CL:0000566!1.92e-16!172;CL:0002032!1.32e-15!165;CL:0000837!1.32e-15!165;CL:0000988!6.37e-15!182;CL:0000081!4.16e-14!11;CL:0000048!4.74e-14!430;CL:0002031!6.01e-14!124;CL:0000034!8.03e-14!444;CL:0000723!1.27e-13!436;CL:0000359!4.37e-12!32;CL:0000775!5.24e-09!3;CL:0002595!1.67e-08!5;CL:0000192!2.04e-08!42;CL:0000514!2.04e-08!42;CL:0002592!3.39e-08!3;CL:0000767!7.80e-08!3;CL:0000134!9.85e-08!358;CL:0002371!1.76e-07!591;CL:0002320!2.40e-07!365 | |||
|ontology_enrichment_celltype_v019=CL:0000860;2.38e-60;33!CL:0002057;2.38e-60;33!CL:0000473;2.49e-49;39!CL:0000234;2.49e-49;39!CL:0000576;1.90e-33;48!CL:0000766;2.33e-31;69!CL:0000775;2.13e-16;3!CL:0000094;2.98e-16;8!CL:0000763;2.03e-14;100!CL:0000081;9.33e-12;11!CL:0000771;1.76e-11;2!CL:0002087;2.50e-10;104!CL:0002393;2.50e-08;6!CL:0002397;2.50e-08;6!CL:0000738;2.58e-07;136 | |||
|ontology_enrichment_celltype_v019_2=CL:0000473,5.35e-68,48;CL:0000234,5.35e-68,48;CL:0000860,1.16e-66,42;CL:0002057,1.16e-66,42;CL:0000766,1.39e-62,72;CL:0002194,2.87e-53,59;CL:0000576,2.87e-53,59;CL:0000040,2.87e-53,59;CL:0000559,2.87e-53,59;CL:0002009,2.29e-51,61;CL:0000839,4.14e-47,66;CL:0000557,2.47e-46,67;CL:0000763,8.15e-40,108;CL:0000049,8.15e-40,108;CL:0000738,2.29e-30,136;CL:0002087,8.42e-25,115;CL:0002032,1.10e-24,161;CL:0000837,1.10e-24,161;CL:0002031,1.54e-23,120;CL:0000037,2.14e-23,168;CL:0000988,6.93e-22,177;CL:0000775,1.97e-16,3;CL:0000094,2.67e-16,8;CL:0000081,8.62e-12,11;CL:0000771,1.58e-11,2;CL:0000034,6.97e-11,441;CL:0000048,1.44e-10,427;CL:0000723,2.55e-10,433;CL:0000134,1.57e-08,354;CL:0002320,3.09e-08,361;CL:0000219,3.34e-07,386 | |||
|ontology_enrichment_development_v019=CL:0002057;5.84e-48;42!CL:0000049;5.84e-09;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002371!8.60e-25!80;UBERON:0002204!3.39e-24!167;UBERON:0001474!1.92e-22!86;UBERON:0002390!1.32e-21!102;UBERON:0003061!1.32e-21!102;UBERON:0002193!1.74e-21!112;UBERON:0004765!1.72e-20!101;UBERON:0001434!1.72e-20!101;UBERON:0003081!1.37e-19!216;UBERON:0002405!4.74e-18!115;UBERON:0000926!3.19e-09!448;UBERON:0004120!3.19e-09!448;UBERON:0006603!3.19e-09!448;UBERON:0003834!1.67e-08!5;UBERON:0001533!1.67e-08!5;UBERON:0001637!2.04e-08!42;UBERON:0003509!2.04e-08!42;UBERON:0004572!2.04e-08!42;UBERON:0001621!3.39e-08!3;UBERON:0004573!6.16e-07!33;UBERON:0004571!6.16e-07!33;UBERON:0002384!8.05e-07!375 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,2.98e-40,76;UBERON:0001474,6.24e-37,82;UBERON:0004765,3.49e-33,90;UBERON:0002405,6.09e-32,93;UBERON:0002390,4.85e-30,98;UBERON:0003061,4.85e-30,98;UBERON:0001434,2.48e-29,100;UBERON:0002193,9.25e-27,108;UBERON:0002204,3.54e-25,167;UBERON:0003081,1.42e-19,203;UBERON:0000926,3.04e-11,315;UBERON:0004120,3.04e-11,315;UBERON:0006603,3.04e-11,315;UBERON:0002384,7.78e-08,371 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.602694528023977,0,0,0,0,0,0,0,0,0,0,0,0.393364276848904,0.383829398097213,0.77408061658038,0,0,0,0,0,0,3.87796785972314,1.00272223735071,3.25516306073778,0,0,0,0,0,0.242584061187816,1.39457422143411,2.46700732813095,1.23882548358041,2.58923153089935,1.5369642391746,1.6553756092201,12.4108445065183,7.74581620300591,5.41705946377367,0,0.272906150057846,1.34834090667051,10.7129362329816,5.1348644332175,11.5080682643827,0.659702600373432,0,0,12.4789972610291,12.4824749432051,22.4216009638407,1.00499466102697,0.521482918420201,1.08594422352558,5.44859552370032,6.2607198117886,9.81033401066742,0,0,0,0.112328631146495,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.12101712596307,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.31780417436063,11.6334079244498,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.300476117813194,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.56449532329816,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144366447761074,0.925971025153221,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.2162378064119,0,2.10833939483032,0,0,0,0.144781306667579,0,0,0,0.394061520403854,0,0,0,0,0,0,0,2.24702107184155,2.99161459204025,5.38740167466846,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.647142602455851,0.106727557803444,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.127612712494584,0,0,0,0.6970372701606,0,0,0,1.11194531462352,0.858749320451947,0,0,0,0,0,0,0,0,0,0,0.404364963146632,3.17020642346017,0.421258456238981,0,1.70599442741899,0,0,0,0,0.551365343546124,0.66343897524122,2.19225442626881,0,0,1.21746226177622,0.30982349809975,0,0,0,1.07001315444375,0,0,0.329294892959902,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.411362273086194,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.23874448473769,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.113942055847001,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19871461170299,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.35857467866569,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106787412567695,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.228840068396924,0,0.15543720058278,0.295710299979268,0.477890301491107,0.899606224327209,0.155262956876259,0,0,0,0,0,0,0,0,0,0.796191777397232,0,0,0,0,0,0.214441591374926,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.127762427639595,0,0,0,0,0,0,0,0,0,0,0.222462803784138,0,0,0,0,0,0,0,0,0,0,0,0.207216164163037,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.178553938605658,0.352894871715692,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.602694528023977,0,0,0,0,0,0,0,0,0,0,0,0.393364276848904,0.383829398097213,0.77408061658038,0,0,0,0,0,0,3.87796785972314,1.00272223735071,3.25516306073778,0,0,0,0,0,0.242584061187816,1.39457422143411,2.46700732813095,1.23882548358041,2.58923153089935,1.5369642391746,1.6553756092201,12.4108445065183,7.74581620300591,5.41705946377367,0,0.272906150057846,1.34834090667051,10.7129362329816,5.1348644332175,11.5080682643827,0.659702600373432,0,0,12.4789972610291,12.4824749432051,22.4216009638407,1.00499466102697,0.521482918420201,1.08594422352558,5.44859552370032,6.2607198117886,9.81033401066742,0,0,0,0.112328631146495,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.12101712596307,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.31780417436063,11.6334079244498,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.300476117813194,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.56449532329816,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144366447761074,0.925971025153221,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.2162378064119,0,2.10833939483032,0,0,0,0.144781306667579,0,0,0,0.394061520403854,0,0,0,0,0,0,0,2.24702107184155,2.99161459204025,5.38740167466846,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.647142602455851,0.106727557803444,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.127612712494584,0,0,0,0.6970372701606,0,0,0,1.11194531462352,0.858749320451947,0,0,0,0,0,0,0,0,0,0,0.404364963146632,3.17020642346017,0.421258456238981,0,1.70599442741899,0,0,0,0,0.551365343546124,0.66343897524122,2.19225442626881,0,0,1.21746226177622,0.30982349809975,0,0,0,1.07001315444375,0,0,0.329294892959902,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.411362273086194,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.23874448473769,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.113942055847001,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19871461170299,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.35857467866569,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106787412567695,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.228840068396924,0,0.15543720058278,0.295710299979268,0.477890301491107,0.899606224327209,0.155262956876259,0,0,0,0,0,0,0,0,0,0.796191777397232,0,0,0,0,0,0.214441591374926,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.127762427639595,0,0,0,0,0,0,0,0,0,0,0.222462803784138,0,0,0,0,0,0,0,0,0,0,0,0.207216164163037,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.178553938605658,0.352894871715692,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p12@IL8 | |||
}} | }} |
Latest revision as of 14:22, 18 September 2015
Short description: | p12@IL8 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_12_at_IL8_5end |
Coexpression cluster: | C0_CD14_Eosinophils_Neutrophils_Basophils_CD34_immature_Peripheral |
Association with transcript: | 110bp_to_AJ227913_5end |
EntrezGene: | IL8 |
HGNC: | 6025 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
defensive cell | 5.35e-68 | 48 |
phagocyte | 5.35e-68 | 48 |
classical monocyte | 1.16e-66 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.16e-66 | 42 |
myeloid leukocyte | 1.39e-62 | 72 |
monopoietic cell | 2.87e-53 | 59 |
monocyte | 2.87e-53 | 59 |
monoblast | 2.87e-53 | 59 |
promonocyte | 2.87e-53 | 59 |
macrophage dendritic cell progenitor | 2.29e-51 | 61 |
myeloid lineage restricted progenitor cell | 4.14e-47 | 66 |
granulocyte monocyte progenitor cell | 2.47e-46 | 67 |
myeloid cell | 8.15e-40 | 108 |
common myeloid progenitor | 8.15e-40 | 108 |
leukocyte | 2.29e-30 | 136 |
nongranular leukocyte | 8.42e-25 | 115 |
hematopoietic oligopotent progenitor cell | 1.10e-24 | 161 |
hematopoietic multipotent progenitor cell | 1.10e-24 | 161 |
hematopoietic lineage restricted progenitor cell | 1.54e-23 | 120 |
hematopoietic stem cell | 2.14e-23 | 168 |
hematopoietic cell | 6.93e-22 | 177 |
neutrophil | 1.97e-16 | 3 |
granulocyte | 2.67e-16 | 8 |
blood cell | 8.62e-12 | 11 |
eosinophil | 1.58e-11 | 2 |
stem cell | 6.97e-11 | 441 |
multi fate stem cell | 1.44e-10 | 427 |
somatic stem cell | 2.55e-10 | 433 |
mesenchymal cell | 1.57e-08 | 354 |
connective tissue cell | 3.09e-08 | 361 |
motile cell | 3.34e-07 | 386 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 2.98e-40 | 76 |
bone element | 6.24e-37 | 82 |
skeletal element | 3.49e-33 | 90 |
immune system | 6.09e-32 | 93 |
hematopoietic system | 4.85e-30 | 98 |
blood island | 4.85e-30 | 98 |
skeletal system | 2.48e-29 | 100 |
hemolymphoid system | 9.25e-27 | 108 |
musculoskeletal system | 3.54e-25 | 167 |
lateral plate mesoderm | 1.42e-19 | 203 |
mesoderm | 3.04e-11 | 315 |
mesoderm-derived structure | 3.04e-11 | 315 |
presumptive mesoderm | 3.04e-11 | 315 |
connective tissue | 7.78e-08 | 371 |