FFCP PHASE1:Hg19::chr8:60031619..60031676,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=9760 | |EntrezGene=9760 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=18988 | |HGNC=18988 | ||
|TSSclassifier=strong | |||
|UniProt=O94900,B4DYA1 | |UniProt=O94900,B4DYA1 | ||
|association_with_transcript=90bp_to_ENST00000361421,ENST00000456290,NM_014729,uc003xtw.1_5end | |association_with_transcript=90bp_to_ENST00000361421,ENST00000456290,NM_014729,uc003xtw.1_5end | ||
|cluster_id=chr8:60031619..60031676,- | |||
|coexpression_cluster_id=C4765 | |coexpression_cluster_id=C4765 | ||
|description=CAGE_peak_1_at_TOX_5end | |description=CAGE_peak_1_at_TOX_5end | ||
|id=chr8:60031619..60031676,- | |id=chr8:60031619..60031676,- | ||
|ontology_enrichment_celltype=CL:0000084;2.44e-13;25!CL:0000791;8.62e-12;18!CL:0000789;8.62e-12;18!CL:0002419;8.62e-12;18!CL:0000542;2.83e-08;53!CL:0000625;1.06e-07;11 | |ontology_enrichment_celltype=CL:0000838!5.77e-13!52;CL:0000084!1.41e-12!25;CL:0000827!1.41e-12!25;CL:0000542!1.63e-12!53;CL:0000051!1.63e-12!53;CL:0000791!7.19e-11!18;CL:0000789!7.19e-11!18;CL:0002420!7.19e-11!18;CL:0002419!7.19e-11!18;CL:0000790!7.19e-11!18;CL:0000625!3.82e-07!11 | ||
| | |ontology_enrichment_celltype_v019=CL:0000084;2.44e-13;25!CL:0000791;8.62e-12;18!CL:0000789;8.62e-12;18!CL:0002419;8.62e-12;18!CL:0000542;2.83e-08;53!CL:0000625;1.06e-07;11 | ||
|ontology_enrichment_celltype_v019_2=CL:0000838,4.32e-14,52;CL:0000542,1.93e-13,53;CL:0000051,1.93e-13,53;CL:0000084,1.94e-13,25;CL:0000827,1.94e-13,25;CL:0000791,8.99e-12,18;CL:0000789,8.99e-12,18;CL:0002420,8.99e-12,18;CL:0002419,8.99e-12,18;CL:0000790,8.99e-12,18;CL:0000625,1.09e-07,11 | |||
|ontology_enrichment_development_v019=CL:0000790;8.62e-12;18!CL:0000051;2.83e-08;53 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_uberon=UBERON:0000956;3.18e-09;25!UBERON:0000203;3.18e-09;25!UBERON:0001950;6.30e-09;20!UBERON:0002619;4.38e-08;22!UBERON:0000178;5.08e-08;15!UBERON:0000179;5.08e-08;15!UBERON:0000463;5.08e-08;15!UBERON:0001869;1.05e-07;32!UBERON:0001893;2.81e-07;34!UBERON:0002791;2.93e-07;32!UBERON:0003528;3.11e-07;34!UBERON:0002020;3.11e-07;34 | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!2.47e-11!115;UBERON:0003056!2.91e-09!61;UBERON:0000153!5.23e-09!129;UBERON:0007811!5.23e-09!129;UBERON:0000956!1.70e-08!25;UBERON:0000203!1.70e-08!25;UBERON:0001950!2.55e-08!20;UBERON:0005743!2.70e-08!86;UBERON:0001869!2.78e-08!32;UBERON:0002020!3.69e-08!34;UBERON:0003528!3.69e-08!34;UBERON:0001893!3.83e-08!34;UBERON:0002791!7.49e-08!33;UBERON:0001017!8.42e-08!82;UBERON:0003075!1.37e-07!86;UBERON:0007284!1.37e-07!86;UBERON:0002780!1.53e-07!41;UBERON:0001890!1.53e-07!41;UBERON:0006240!1.53e-07!41;UBERON:0002619!1.86e-07!22;UBERON:0000178!1.92e-07!15;UBERON:0000179!1.92e-07!15;UBERON:0000463!1.92e-07!15;UBERON:0003080!2.34e-07!42;UBERON:0000033!2.79e-07!123;UBERON:0001049!9.57e-07!57;UBERON:0005068!9.57e-07!57;UBERON:0006241!9.57e-07!57;UBERON:0007135!9.57e-07!57 | |||
|ontology_enrichment_uberon_v019=UBERON:0000956;3.18e-09;25!UBERON:0000203;3.18e-09;25!UBERON:0001950;6.30e-09;20!UBERON:0002619;4.38e-08;22!UBERON:0000178;5.08e-08;15!UBERON:0000179;5.08e-08;15!UBERON:0000463;5.08e-08;15!UBERON:0001869;1.05e-07;32!UBERON:0001893;2.81e-07;34!UBERON:0002791;2.93e-07;32!UBERON:0003528;3.11e-07;34!UBERON:0002020;3.11e-07;34 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003056,5.17e-10,61;UBERON:0000956,2.41e-09,25;UBERON:0000203,2.41e-09,25;UBERON:0001950,5.63e-09,20;UBERON:0007023,1.14e-08,114;UBERON:0001869,2.13e-08,32;UBERON:0003528,2.77e-08,34;UBERON:0002020,2.77e-08,34;UBERON:0001893,2.88e-08,34;UBERON:0002619,3.35e-08,22;UBERON:0003075,4.18e-08,82;UBERON:0007284,4.18e-08,82;UBERON:0000178,5.13e-08,15;UBERON:0000179,5.13e-08,15;UBERON:0000463,5.13e-08,15;UBERON:0002791,5.13e-08,32;UBERON:0002780,1.29e-07,41;UBERON:0001890,1.29e-07,41;UBERON:0003080,1.29e-07,41;UBERON:0006240,1.29e-07,41;UBERON:0001017,1.93e-07,81;UBERON:0002346,7.13e-07,86 | |||
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| ||
|short_description=p1@TOX | |short_description=p1@TOX | ||
}} | }} |
Latest revision as of 16:11, 18 September 2015
Short description: | p1@TOX |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_TOX_5end |
Coexpression cluster: | C4765_Hodgkin_acute_thymus_chronic_CD4_Mast_Natural |
Association with transcript: | 90bp_to_ENST00000361421, ENST00000456290, NM_014729, uc003xtw.1_5end |
EntrezGene: | TOX |
HGNC: | 18988 |
UniProt: | O94900B4DYA1 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphoid lineage restricted progenitor cell | 4.32e-14 | 52 |
lymphocyte | 1.93e-13 | 53 |
common lymphoid progenitor | 1.93e-13 | 53 |
T cell | 1.94e-13 | 25 |
pro-T cell | 1.94e-13 | 25 |
mature alpha-beta T cell | 8.99e-12 | 18 |
alpha-beta T cell | 8.99e-12 | 18 |
immature T cell | 8.99e-12 | 18 |
mature T cell | 8.99e-12 | 18 |
immature alpha-beta T cell | 8.99e-12 | 18 |
CD8-positive, alpha-beta T cell | 1.09e-07 | 11 |
Ontology term | p-value | n |
---|---|---|
pre-chordal neural plate | 5.17e-10 | 61 |
cerebral cortex | 2.41e-09 | 25 |
pallium | 2.41e-09 | 25 |
neocortex | 5.63e-09 | 20 |
adult organism | 1.14e-08 | 114 |
cerebral hemisphere | 2.13e-08 | 32 |
brain grey matter | 2.77e-08 | 34 |
gray matter | 2.77e-08 | 34 |
telencephalon | 2.88e-08 | 34 |
regional part of cerebral cortex | 3.35e-08 | 22 |
neural plate | 4.18e-08 | 82 |
presumptive neural plate | 4.18e-08 | 82 |
blood | 5.13e-08 | 15 |
haemolymphatic fluid | 5.13e-08 | 15 |
organism substance | 5.13e-08 | 15 |
regional part of telencephalon | 5.13e-08 | 32 |
regional part of forebrain | 1.29e-07 | 41 |
forebrain | 1.29e-07 | 41 |
anterior neural tube | 1.29e-07 | 41 |
future forebrain | 1.29e-07 | 41 |
central nervous system | 1.93e-07 | 81 |
neurectoderm | 7.13e-07 | 86 |