FFCP PHASE1:Hg19::chr2:85829972..85830028,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=10713 | |EntrezGene=10713 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=20071 | |HGNC=20071 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000459775,ENST00000491659,uc002sqb.2_5end | |association_with_transcript=0bp_to_ENST00000459775,ENST00000491659,uc002sqb.2_5end | ||
|cluster_id=chr2:85829972..85830028,+ | |||
|description=CAGE_peak_2_at_USP39_5end | |description=CAGE_peak_2_at_USP39_5end | ||
|id=chr2:85829972..85830028,+ | |id=chr2:85829972..85830028,+ | ||
|ontology_enrichment_celltype=CL:0000055!2.30e-09!180;CL:0000220!2.82e-07!246;CL:0000192!4.31e-07!42;CL:0000514!4.31e-07!42;CL:0000680!6.28e-07!57;CL:0000056!6.28e-07!57;CL:0000355!6.28e-07!57;CL:0002321!6.98e-07!248 | |ontology_enrichment_celltype=CL:0000055!2.30e-09!180;CL:0000220!2.82e-07!246;CL:0000192!4.31e-07!42;CL:0000514!4.31e-07!42;CL:0000680!6.28e-07!57;CL:0000056!6.28e-07!57;CL:0000355!6.28e-07!57;CL:0002321!6.98e-07!248 | ||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2=CL:0000680,1.64e-07,58;CL:0000056,1.64e-07,58;CL:0000355,1.64e-07,58;CL:0000192,1.70e-07,43;CL:0000514,1.70e-07,43;CL:0002321,5.69e-07,250 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000475!1.95e-19!365;UBERON:0000481!6.77e-12!347;UBERON:0000483!2.79e-10!309;UBERON:0002100!5.62e-10!216;UBERON:0000119!5.73e-10!312;UBERON:0000468!1.37e-09!659;UBERON:0000914!4.41e-09!83;UBERON:0002329!4.41e-09!83;UBERON:0003077!4.41e-09!83;UBERON:0003059!4.41e-09!83;UBERON:0007282!4.41e-09!83;UBERON:0009618!4.41e-09!83;UBERON:0007285!4.41e-09!83;UBERON:0000033!1.70e-08!123;UBERON:0004121!3.12e-08!169;UBERON:0004111!4.69e-08!241;UBERON:0000924!5.28e-08!173;UBERON:0006601!5.28e-08!173;UBERON:0000486!6.43e-08!82;UBERON:0000153!8.12e-08!129;UBERON:0007811!8.12e-08!129;UBERON:0004290!1.08e-07!70;UBERON:0005256!1.68e-07!143;UBERON:0001134!2.83e-07!61;UBERON:0002036!2.83e-07!61;UBERON:0003082!2.83e-07!61;UBERON:0000477!4.68e-07!286;UBERON:0002385!5.45e-07!63;UBERON:0001015!5.45e-07!63;UBERON:0000383!5.45e-07!63 | |ontology_enrichment_uberon=UBERON:0000475!1.95e-19!365;UBERON:0000481!6.77e-12!347;UBERON:0000483!2.79e-10!309;UBERON:0002100!5.62e-10!216;UBERON:0000119!5.73e-10!312;UBERON:0000468!1.37e-09!659;UBERON:0000914!4.41e-09!83;UBERON:0002329!4.41e-09!83;UBERON:0003077!4.41e-09!83;UBERON:0003059!4.41e-09!83;UBERON:0007282!4.41e-09!83;UBERON:0009618!4.41e-09!83;UBERON:0007285!4.41e-09!83;UBERON:0000033!1.70e-08!123;UBERON:0004121!3.12e-08!169;UBERON:0004111!4.69e-08!241;UBERON:0000924!5.28e-08!173;UBERON:0006601!5.28e-08!173;UBERON:0000486!6.43e-08!82;UBERON:0000153!8.12e-08!129;UBERON:0007811!8.12e-08!129;UBERON:0004290!1.08e-07!70;UBERON:0005256!1.68e-07!143;UBERON:0001134!2.83e-07!61;UBERON:0002036!2.83e-07!61;UBERON:0003082!2.83e-07!61;UBERON:0000477!4.68e-07!286;UBERON:0002385!5.45e-07!63;UBERON:0001015!5.45e-07!63;UBERON:0000383!5.45e-07!63 | ||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000483,9.98e-11,306;UBERON:0000119,2.27e-10,309;UBERON:0004121,7.33e-09,171;UBERON:0000924,7.33e-09,171;UBERON:0006601,7.33e-09,171;UBERON:0000486,2.12e-08,83;UBERON:0002100,2.44e-08,199;UBERON:0007524,2.51e-08,73;UBERON:0002329,2.81e-08,71;UBERON:0003059,2.81e-08,71;UBERON:0007282,2.81e-08,71;UBERON:0004290,2.81e-08,71;UBERON:0009618,2.81e-08,71;UBERON:0003077,2.89e-08,72;UBERON:0007285,2.89e-08,72;UBERON:0004111,5.56e-08,240;UBERON:0001134,7.33e-08,62;UBERON:0002036,7.33e-08,62;UBERON:0003082,7.33e-08,62;UBERON:0003104,9.39e-08,160;UBERON:0009142,9.39e-08,160;UBERON:0007503,1.26e-07,78;UBERON:0002385,1.47e-07,64;UBERON:0001015,1.47e-07,64;UBERON:0000383,1.47e-07,64;UBERON:0005256,7.72e-07,122 | |||
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| ||
|short_description=p2@USP39 | |short_description=p2@USP39 | ||
}} | }} |
Latest revision as of 16:45, 18 September 2015
Short description: | p2@USP39 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_USP39_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000459775, ENST00000491659, uc002sqb.2_5end |
EntrezGene: | USP39 |
HGNC: | 20071 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
muscle precursor cell | 1.64e-07 | 58 |
myoblast | 1.64e-07 | 58 |
multi-potent skeletal muscle stem cell | 1.64e-07 | 58 |
smooth muscle cell | 1.70e-07 | 43 |
smooth muscle myoblast | 1.70e-07 | 43 |
embryonic cell | 5.69e-07 | 250 |
Ontology term | p-value | n |
---|---|---|
epithelium | 9.98e-11 | 306 |
cell layer | 2.27e-10 | 309 |
ectoderm-derived structure | 7.33e-09 | 171 |
ectoderm | 7.33e-09 | 171 |
presumptive ectoderm | 7.33e-09 | 171 |
multilaminar epithelium | 2.12e-08 | 83 |
trunk | 2.44e-08 | 199 |
dense mesenchyme tissue | 2.51e-08 | 73 |
somite | 2.81e-08 | 71 |
presomitic mesoderm | 2.81e-08 | 71 |
presumptive segmental plate | 2.81e-08 | 71 |
dermomyotome | 2.81e-08 | 71 |
trunk paraxial mesoderm | 2.81e-08 | 71 |
paraxial mesoderm | 2.89e-08 | 72 |
presumptive paraxial mesoderm | 2.89e-08 | 72 |
anatomical conduit | 5.56e-08 | 240 |
skeletal muscle tissue | 7.33e-08 | 62 |
striated muscle tissue | 7.33e-08 | 62 |
myotome | 7.33e-08 | 62 |
mesenchyme | 9.39e-08 | 160 |
entire embryonic mesenchyme | 9.39e-08 | 160 |
epithelial vesicle | 1.26e-07 | 78 |
muscle tissue | 1.47e-07 | 64 |
musculature | 1.47e-07 | 64 |
musculature of body | 1.47e-07 | 64 |
trunk mesenchyme | 7.72e-07 | 122 |