FFCP PHASE1:Hg19::chr15:78556480..78556510,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(8 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=55466 | |EntrezGene=55466 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=14885 | |HGNC=14885 | ||
|TSSclassifier=strong | |||
|UniProt=F5H300,Q69YX3,Q8WW22 | |UniProt=F5H300,Q69YX3,Q8WW22 | ||
|association_with_transcript=0bp_to_ENST00000489435,NM_018602,uc002bdi.2_5end | |association_with_transcript=0bp_to_ENST00000489435,NM_018602,uc002bdi.2_5end | ||
|cluster_id=chr15:78556480..78556510,+ | |||
|coexpression_cluster_id=C33 | |||
|description=CAGE_peak_2_at_DNAJA4_5end | |description=CAGE_peak_2_at_DNAJA4_5end | ||
|id=chr15:78556480..78556510,+ | |id=chr15:78556480..78556510,+ | ||
|ontology_enrichment_celltype=CL:0002368!3.65e-08!13 | |ontology_enrichment_celltype=CL:0002368!3.65e-08!13 | ||
|ontology_enrichment_celltype_v019=CL:0002368;5.23e-09;13!CL:0002202;5.95e-07;9!CL:0002632;5.95e-07;9 | |||
|ontology_enrichment_celltype_v019_2=CL:0002368,5.55e-09,13;CL:0000066,2.13e-08,253;CL:0002202,5.69e-07,9;CL:0002632,5.69e-07,9 | |||
|ontology_enrichment_development_v019=UBERON:0008947;5.18e-07;29 | |||
|ontology_enrichment_disease=DOID:305!5.62e-08!106 | |ontology_enrichment_disease=DOID:305!5.62e-08!106 | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:305,3.46e-13,106;DOID:0050687,5.59e-07,143 | |||
|ontology_enrichment_uberon=UBERON:0007023!1.40e-18!115;UBERON:0004119!4.29e-15!169;UBERON:0000925!4.29e-15!169;UBERON:0006595!4.29e-15!169;UBERON:0004921!1.46e-10!129;UBERON:0004185!1.46e-10!129;UBERON:0000077!1.83e-10!130;UBERON:0000065!3.45e-10!53;UBERON:0001007!4.65e-10!155;UBERON:0001555!4.65e-10!155;UBERON:0007026!4.65e-10!155;UBERON:0008947!1.81e-08!38;UBERON:0003258!1.81e-08!38;UBERON:0001004!6.67e-08!72;UBERON:0001041!8.06e-07!98;UBERON:0000072!8.82e-07!46 | |||
|ontology_enrichment_uberon_v019=UBERON:0000065;1.32e-09;44!UBERON:0005910;7.68e-09;6!UBERON:0000178;2.23e-08;15!UBERON:0000179;2.23e-08;15!UBERON:0000463;2.23e-08;15!UBERON:0000365;7.65e-08;5!UBERON:0004921;2.04e-07;33!UBERON:0005409;2.51e-07;22!UBERON:0002294;6.20e-07;7!UBERON:0001173;6.20e-07;7 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004119,1.78e-19,160;UBERON:0000925,1.78e-19,160;UBERON:0006595,1.78e-19,160;UBERON:0004921,4.41e-14,118;UBERON:0001007,8.35e-13,145;UBERON:0001555,8.35e-13,145;UBERON:0007026,8.35e-13,145;UBERON:0000065,3.86e-11,54;UBERON:0008947,1.81e-10,38;UBERON:0003258,1.81e-10,38;UBERON:0001041,6.50e-10,87;UBERON:0005631,2.33e-09,14;UBERON:0000158,2.33e-09,14;UBERON:0005910,1.04e-08,6;UBERON:0007023,1.12e-08,114;UBERON:0001004,1.38e-08,74;UBERON:0000178,2.28e-08,15;UBERON:0000179,2.28e-08,15;UBERON:0000463,2.28e-08,15;UBERON:0000365,8.89e-08,5;UBERON:0005409,2.28e-07,25;UBERON:0000072,2.58e-07,47;UBERON:0005178,6.92e-07,34;UBERON:0002224,6.92e-07,34 | |||
|phase1_expression=0.181678379270557,0.214100523890983,0,0,0,0,2.53299878168311,0,0.261185628199839,0.245733936501509,0,8.51921351307672,7.91300934685361,0,0,0,0,0,0,0,0,0,0,0.136874425072884,0.125542639594803,0,0,0,0,0,1.08371286321253,4.59710612239464,2.71085326900425,11.0926203050036,0,0,0,0,0,0,0,0,0,0,0.377875943688809,0,0,0,0,0,0,0,0.344745680736619,0,0,0,0,0.224723484445085,0.612167784741805,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.209658645508376,0,0,0,0,0,0,0,0,0.889509253863555,0,0,0,0,0,0,0,0,0,0,5.00429761072646,0,0,0.205601498999509,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.361439152384566,0,0.144846518960824,0,0,0,0,0,18.0096228809355,1.09288586487763,1.48313777113772,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.74437620857014,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.125118519871964,0,0,0,0,0,0.179389635688862,0,0,0,0,0,0,0.168776332241266,0,0,0,0,0,0,0,0,0,0,0.365921118388786,0.662648841607426,0.348581828608555,0.10366105501537,0.252320850875628,0,0,0,0,0,0,2.12952240071719,1.85443159085912,1.44606617930089,2.09558548191549,2.17879444092406,1.42362371466658,1.07865046528132,0.98110732562673,0.769494313892781,0,0,0,0,0,0,0,0,0,0,0.109750285408626,4.49607013030478,3.31745608958382,0.185176890317059,0.325808305310325,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.268675568108545,0,0,0,0,0.207328115540772,0.720599767084807,0,0.952468414382536,0.381988425558278,0,1.71072446022705,1.23392991243988,0.300343057843917,0,0.112131084345361,0,0,0,3.57656445851882,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144781306667579,0.205476322550383,0,0,0,0,0,0,0,0,0,0,0,0,0.414415513436035,0,0,0,0,0,0,0,0,0,0,0,0.184369168541703,0.0868836144680828,0,0.343143423810856,0,0.215714200818617,0,6.97193414326397,1.66435439510497,1.81434175997808,0.248107807818777,0.920771839728375,0,0.128139149255701,0,0,0,0,0,0,0,0,0,0,0.460404944679482,0,0,0.262248829918848,0,0,0,0,0,0,0,0,0,0,0,0,0,0,156.551551925197,143.005191710621,0,0,0,1.54561517471583,0,0,0,0,0,0,0.154048617114644,0,0,0,0.145016693914229,0,0,2.31398881505369,0.768760269460425,2.04180339991335,3.33820676823315,0,0,0,0.308033580176089,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.46399605811843,2.68120910214315,2.17781969722645,1.60044461320525,6.02707521739722,5.05414427002877,9.75546337780687,6.20253180558791,24.3574852431441,23.7037534214136,24.494829048489,17.1526878329608,17.2772154696202,34.369085493214,31.3218233598107,35.6906329332422,0,0,7.59624669541198,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,24.8896918742932,0.146508179271894,0,0,0,31.7530164701128,18.7087748924562,71.8756042912203,0.994147647766298,0.140669416410513,0,0,0,7.57142355354065,2.48655523978033,0.251932747854276,0,0,0,1.16828856491525,1.25314822272926,0.511572370226872,8.38468947913936,14.3689855408164,0,0,0.0927680981618513,0,0,0,1.44999915086959,6.03105275913148,2.03402920234213,1.89110145414349,0,0,0,0,0,0,0,0.295547618953547,0.219385397153973,0,30.6732237412927,2.46240827212151,0,0,0,0,6.69902435437031,0,0,0,0,6.98089063980657,0.451191321234361,0,0,0.37950746544837,13.6685457923126,0,0,0,0,12.9384051040206,4.15750553165694,14.664723478407,0,0,0,0,0,0,0,0,1.21390189767046,0.394584402849391,4.83962864194656,0,0.189559738885464,0,0,0,0,0,0,0,0,0,23.2241981872075,3.3082498500553,0.34945333648406,0,14.2231806994955,9.35543258703175,12.8921267573539,3.10364852762942,0,1.12990370390266,0,0,0.0633107959558787,16.8174189151931,6.8936585416319,1.70762395791482,0,15.9940363041058,0,0,0,0.372757606696298,7.30651507312066,0,0,0,0,0,0,0,0,0,0.279282401272254,0.229160424011684,0,3.59422200898184,0,0.223171457441873,0.604651252380536,0,0,0,0,0,0,0,0,0,0.160753148465019,0.275078873194468,0,2.249738915515,27.8568703640862,0,6.37325906438606,0.0788057072991982,0.681909645754975,0,0,0,0,0,0,0,0,0,0,6.97786426369381,0,0,0,17.2258955585888,0.129282956361551,0,0,0,4.37828391527548,15.0916132895679,2.48543433208317,0,0,0,5.74507131993164,0,0.5013797880454,0.306345576763462,0,0,0,0.122026264901963,0,0,0,0.248385611765534,0,0,0,0,5.17584803335978,0.468334905806882,2.02889440055155,0,0,0,0.189403005275089,0,0,0,0,0.15543720058278,0,0,0,0,0,0,0,0,0,0,0,0.322231671127465,0,0,0,0.343395705182793,0.336749488765919,0,0,0,0,0,0,0,0,0,0,0.176689145945881,0,0,0,0,0,0,0,0,0,0,0,18.5954668555592,0,0,0,0,0,0.419638523158333,0.622077260032973,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0642292250964595,0,0,0,0,0.207471757392654,0.161475645631851,1.42769420259154,6.87034029507179,14.3923062484243,0,0,0,2.7614397042404,0,0.225630985047772,0,0,0,0,11.3849186387125,0.0675375846183947,0,0,0,0,0.548257766857182,2.48105589194647,0,3.96063525682745,1.60710550763486,0.336283722218824,0.606965604236632,1.13831095675649,1.41923792260222,0,0,0.135939465953663,0.0657727735628491,0.472775363535873,0,1.96232732126285,0,20.4598679219066,11.8710633666234,0,0,0.0714765441766563,0,0,0.521574816907738,0,0,0,0,1.29068207646083,0,0,0.423387050190929,2.06196181689645,0,0,0,17.8633425179742,7.43699342391843,0,0.102662806856247,0,5.82853191670967,0,0,0.475680363110274,1.46829906650648,0,0,2.62392137567012,0.218559560503957,1.41095188908457,0.735444965261716,0,0.392616934229891,0,0.8453114551668,0,0.187967835959707,5.9301256935691,0,6.78504966701499,0,0,4.3820183294791,0.458729283404541,0,0,0,0.436350690340377,2.645134202577,0,0,0,0,0,0,1.63182127587171,7.74930475270125,0,14.2903297396654,29.0232414175857,60.8278575454525,0,0,11.727869004554,8.09419066976717,0.129177819672012,0.806971285846153,0,0.0636471582781649,0.404234377916439,3.9189014621453,2.39563310759697,2.76143417359809,19.938773099164,6.32054677437425,4.39577650499262,2.02781957167659,0,8.53339420012575,7.03922827210363,0.733448665097199,1.62758471326295,7.98908129022615,0,0 | |phase1_expression=0.181678379270557,0.214100523890983,0,0,0,0,2.53299878168311,0,0.261185628199839,0.245733936501509,0,8.51921351307672,7.91300934685361,0,0,0,0,0,0,0,0,0,0,0.136874425072884,0.125542639594803,0,0,0,0,0,1.08371286321253,4.59710612239464,2.71085326900425,11.0926203050036,0,0,0,0,0,0,0,0,0,0,0.377875943688809,0,0,0,0,0,0,0,0.344745680736619,0,0,0,0,0.224723484445085,0.612167784741805,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.209658645508376,0,0,0,0,0,0,0,0,0.889509253863555,0,0,0,0,0,0,0,0,0,0,5.00429761072646,0,0,0.205601498999509,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.361439152384566,0,0.144846518960824,0,0,0,0,0,18.0096228809355,1.09288586487763,1.48313777113772,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.74437620857014,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.125118519871964,0,0,0,0,0,0.179389635688862,0,0,0,0,0,0,0.168776332241266,0,0,0,0,0,0,0,0,0,0,0.365921118388786,0.662648841607426,0.348581828608555,0.10366105501537,0.252320850875628,0,0,0,0,0,0,2.12952240071719,1.85443159085912,1.44606617930089,2.09558548191549,2.17879444092406,1.42362371466658,1.07865046528132,0.98110732562673,0.769494313892781,0,0,0,0,0,0,0,0,0,0,0.109750285408626,4.49607013030478,3.31745608958382,0.185176890317059,0.325808305310325,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.268675568108545,0,0,0,0,0.207328115540772,0.720599767084807,0,0.952468414382536,0.381988425558278,0,1.71072446022705,1.23392991243988,0.300343057843917,0,0.112131084345361,0,0,0,3.57656445851882,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144781306667579,0.205476322550383,0,0,0,0,0,0,0,0,0,0,0,0,0.414415513436035,0,0,0,0,0,0,0,0,0,0,0,0.184369168541703,0.0868836144680828,0,0.343143423810856,0,0.215714200818617,0,6.97193414326397,1.66435439510497,1.81434175997808,0.248107807818777,0.920771839728375,0,0.128139149255701,0,0,0,0,0,0,0,0,0,0,0.460404944679482,0,0,0.262248829918848,0,0,0,0,0,0,0,0,0,0,0,0,0,0,156.551551925197,143.005191710621,0,0,0,1.54561517471583,0,0,0,0,0,0,0.154048617114644,0,0,0,0.145016693914229,0,0,2.31398881505369,0.768760269460425,2.04180339991335,3.33820676823315,0,0,0,0.308033580176089,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.46399605811843,2.68120910214315,2.17781969722645,1.60044461320525,6.02707521739722,5.05414427002877,9.75546337780687,6.20253180558791,24.3574852431441,23.7037534214136,24.494829048489,17.1526878329608,17.2772154696202,34.369085493214,31.3218233598107,35.6906329332422,0,0,7.59624669541198,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,24.8896918742932,0.146508179271894,0,0,0,31.7530164701128,18.7087748924562,71.8756042912203,0.994147647766298,0.140669416410513,0,0,0,7.57142355354065,2.48655523978033,0.251932747854276,0,0,0,1.16828856491525,1.25314822272926,0.511572370226872,8.38468947913936,14.3689855408164,0,0,0.0927680981618513,0,0,0,1.44999915086959,6.03105275913148,2.03402920234213,1.89110145414349,0,0,0,0,0,0,0,0.295547618953547,0.219385397153973,0,30.6732237412927,2.46240827212151,0,0,0,0,6.69902435437031,0,0,0,0,6.98089063980657,0.451191321234361,0,0,0.37950746544837,13.6685457923126,0,0,0,0,12.9384051040206,4.15750553165694,14.664723478407,0,0,0,0,0,0,0,0,1.21390189767046,0.394584402849391,4.83962864194656,0,0.189559738885464,0,0,0,0,0,0,0,0,0,23.2241981872075,3.3082498500553,0.34945333648406,0,14.2231806994955,9.35543258703175,12.8921267573539,3.10364852762942,0,1.12990370390266,0,0,0.0633107959558787,16.8174189151931,6.8936585416319,1.70762395791482,0,15.9940363041058,0,0,0,0.372757606696298,7.30651507312066,0,0,0,0,0,0,0,0,0,0.279282401272254,0.229160424011684,0,3.59422200898184,0,0.223171457441873,0.604651252380536,0,0,0,0,0,0,0,0,0,0.160753148465019,0.275078873194468,0,2.249738915515,27.8568703640862,0,6.37325906438606,0.0788057072991982,0.681909645754975,0,0,0,0,0,0,0,0,0,0,6.97786426369381,0,0,0,17.2258955585888,0.129282956361551,0,0,0,4.37828391527548,15.0916132895679,2.48543433208317,0,0,0,5.74507131993164,0,0.5013797880454,0.306345576763462,0,0,0,0.122026264901963,0,0,0,0.248385611765534,0,0,0,0,5.17584803335978,0.468334905806882,2.02889440055155,0,0,0,0.189403005275089,0,0,0,0,0.15543720058278,0,0,0,0,0,0,0,0,0,0,0,0.322231671127465,0,0,0,0.343395705182793,0.336749488765919,0,0,0,0,0,0,0,0,0,0,0.176689145945881,0,0,0,0,0,0,0,0,0,0,0,18.5954668555592,0,0,0,0,0,0.419638523158333,0.622077260032973,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0642292250964595,0,0,0,0,0.207471757392654,0.161475645631851,1.42769420259154,6.87034029507179,14.3923062484243,0,0,0,2.7614397042404,0,0.225630985047772,0,0,0,0,11.3849186387125,0.0675375846183947,0,0,0,0,0.548257766857182,2.48105589194647,0,3.96063525682745,1.60710550763486,0.336283722218824,0.606965604236632,1.13831095675649,1.41923792260222,0,0,0.135939465953663,0.0657727735628491,0.472775363535873,0,1.96232732126285,0,20.4598679219066,11.8710633666234,0,0,0.0714765441766563,0,0,0.521574816907738,0,0,0,0,1.29068207646083,0,0,0.423387050190929,2.06196181689645,0,0,0,17.8633425179742,7.43699342391843,0,0.102662806856247,0,5.82853191670967,0,0,0.475680363110274,1.46829906650648,0,0,2.62392137567012,0.218559560503957,1.41095188908457,0.735444965261716,0,0.392616934229891,0,0.8453114551668,0,0.187967835959707,5.9301256935691,0,6.78504966701499,0,0,4.3820183294791,0.458729283404541,0,0,0,0.436350690340377,2.645134202577,0,0,0,0,0,0,1.63182127587171,7.74930475270125,0,14.2903297396654,29.0232414175857,60.8278575454525,0,0,11.727869004554,8.09419066976717,0.129177819672012,0.806971285846153,0,0.0636471582781649,0.404234377916439,3.9189014621453,2.39563310759697,2.76143417359809,19.938773099164,6.32054677437425,4.39577650499262,2.02781957167659,0,8.53339420012575,7.03922827210363,0.733448665097199,1.62758471326295,7.98908129022615,0,0 | ||
|short_description=p2@DNAJA4 | |short_description=p2@DNAJA4 | ||
}} | }} |
Latest revision as of 06:42, 19 September 2015
Short description: | p2@DNAJA4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_DNAJA4_5end |
Coexpression cluster: | C33_Reticulocytes_liver_Whole_blood_chronic_acute_spleen |
Association with transcript: | 0bp_to_ENST00000489435, NM_018602, uc002bdi.2_5end |
EntrezGene: | DNAJA4 |
HGNC: | 14885 |
UniProt: | F5H300Q69YX3Q8WW22 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
respiratory epithelial cell | 5.55e-09 | 13 |
epithelial cell | 2.13e-08 | 253 |
epithelial cell of tracheobronchial tree | 5.69e-07 | 9 |
epithelial cell of lower respiratory tract | 5.69e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
endoderm-derived structure | 1.78e-19 | 160 |
endoderm | 1.78e-19 | 160 |
presumptive endoderm | 1.78e-19 | 160 |
subdivision of digestive tract | 4.41e-14 | 118 |
digestive system | 8.35e-13 | 145 |
digestive tract | 8.35e-13 | 145 |
primitive gut | 8.35e-13 | 145 |
respiratory tract | 3.86e-11 | 54 |
respiratory primordium | 1.81e-10 | 38 |
endoderm of foregut | 1.81e-10 | 38 |
foregut | 6.50e-10 | 87 |
extraembryonic membrane | 2.33e-09 | 14 |
membranous layer | 2.33e-09 | 14 |
transitional epithelium | 1.04e-08 | 6 |
adult organism | 1.12e-08 | 114 |
respiratory system | 1.38e-08 | 74 |
blood | 2.28e-08 | 15 |
haemolymphatic fluid | 2.28e-08 | 15 |
organism substance | 2.28e-08 | 15 |
urothelium | 8.89e-08 | 5 |
gastrointestinal system | 2.28e-07 | 25 |
segment of respiratory tract | 2.58e-07 | 47 |
thoracic cavity element | 6.92e-07 | 34 |
thoracic cavity | 6.92e-07 | 34 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 3.46e-13 | 106 |
cell type cancer | 5.59e-07 | 143 |