FFCP PHASE1:Hg19::chr6:108145536..108145550,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=256380 | |EntrezGene=256380 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=21397 | |HGNC=21397 | ||
|TSSclassifier=strong | |||
|UniProt=Q8N228 | |UniProt=Q8N228 | ||
|association_with_transcript=-15bp_to_ENST00000369022,NM_198081,uc003prz.3,uc010kdf.2,uc011eam.1_5end | |association_with_transcript=-15bp_to_ENST00000369022,NM_198081,uc003prz.3,uc010kdf.2,uc011eam.1_5end | ||
|cluster_id=chr6:108145536..108145550,- | |||
|coexpression_cluster_id=C18 | |||
|description=CAGE_peak_4_at_SCML4_5end | |description=CAGE_peak_4_at_SCML4_5end | ||
|id=chr6:108145536..108145550,- | |id=chr6:108145536..108145550,- | ||
|ontology_enrichment_celltype=CL:0000791!5.69e-33!18;CL:0000789!5.69e-33!18;CL:0002420!5.69e-33!18;CL:0002419!5.69e-33!18;CL:0000790!5.69e-33!18;CL:0000542!4.18e-31!53;CL:0000051!4.18e-31!53;CL:0000838!5.51e-30!52;CL:0000738!1.30e-22!140;CL:0000084!4.50e-22!25;CL:0000827!4.50e-22!25;CL:0000625!1.31e-21!11;CL:0002087!3.04e-20!119;CL:0000037!3.24e-18!172;CL:0000566!3.24e-18!172;CL:0002032!1.30e-16!165;CL:0000837!1.30e-16!165;CL:0000988!2.32e-16!182;CL:0002031!1.10e-14!124;CL:0000236!8.85e-14!14;CL:0000624!9.14e-12!6;CL:0000094!4.65e-08!8;CL:0000623!4.92e-07!3;CL:0000825!4.92e-07!3;CL:0000945!6.13e-07!24;CL:0000826!6.13e-07!24 | |ontology_enrichment_celltype=CL:0000791!5.69e-33!18;CL:0000789!5.69e-33!18;CL:0002420!5.69e-33!18;CL:0002419!5.69e-33!18;CL:0000790!5.69e-33!18;CL:0000542!4.18e-31!53;CL:0000051!4.18e-31!53;CL:0000838!5.51e-30!52;CL:0000738!1.30e-22!140;CL:0000084!4.50e-22!25;CL:0000827!4.50e-22!25;CL:0000625!1.31e-21!11;CL:0002087!3.04e-20!119;CL:0000037!3.24e-18!172;CL:0000566!3.24e-18!172;CL:0002032!1.30e-16!165;CL:0000837!1.30e-16!165;CL:0000988!2.32e-16!182;CL:0002031!1.10e-14!124;CL:0000236!8.85e-14!14;CL:0000624!9.14e-12!6;CL:0000094!4.65e-08!8;CL:0000623!4.92e-07!3;CL:0000825!4.92e-07!3;CL:0000945!6.13e-07!24;CL:0000826!6.13e-07!24 | ||
|ontology_enrichment_celltype_v019=CL:0000791;5.38e-46;18!CL:0000789;5.38e-46;18!CL:0002419;5.38e-46;18!CL:0000625;6.67e-37;11!CL:0000084;6.38e-32;25!CL:0000542;2.32e-26;53!CL:0000236;3.30e-18;13!CL:0000624;4.41e-14;6!CL:0000623;3.09e-11;3!CL:0000226;1.04e-10;3!CL:0000842;1.04e-10;3!CL:0000945;4.13e-09;24!CL:0002087;1.17e-08;104 | |||
|ontology_enrichment_celltype_v019_2=CL:0000791,3.47e-46,18;CL:0000789,3.47e-46,18;CL:0002420,3.47e-46,18;CL:0002419,3.47e-46,18;CL:0000790,3.47e-46,18;CL:0000838,6.16e-44,52;CL:0000542,5.78e-43,53;CL:0000051,5.78e-43,53;CL:0000625,5.21e-37,11;CL:0000084,4.68e-32,25;CL:0000827,4.68e-32,25;CL:0000738,3.80e-24,136;CL:0002087,4.84e-23,115;CL:0000037,5.07e-19,168;CL:0000988,1.39e-17,177;CL:0002031,3.17e-17,120;CL:0000236,9.42e-17,14;CL:0002032,2.25e-16,161;CL:0000837,2.25e-16,161;CL:0000624,3.60e-14,6;CL:0000623,3.15e-11,3;CL:0000825,3.15e-11,3;CL:0000226,1.33e-10,3;CL:0000842,1.33e-10,3;CL:0000945,4.32e-09,24;CL:0000826,4.32e-09,24 | |||
|ontology_enrichment_development_v019=CL:0000790;5.38e-46;18!CL:0000051;2.32e-26;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000178!1.22e-13!15;UBERON:0000179!1.22e-13!15;UBERON:0000463!1.22e-13!15;UBERON:0007023!2.45e-10!115;UBERON:0004177!2.80e-09!7;UBERON:0002370!4.99e-08!4;UBERON:0005058!4.99e-08!4;UBERON:0009113!4.99e-08!4;UBERON:0003295!4.99e-08!4;UBERON:0005562!4.99e-08!4 | |ontology_enrichment_uberon=UBERON:0000178!1.22e-13!15;UBERON:0000179!1.22e-13!15;UBERON:0000463!1.22e-13!15;UBERON:0007023!2.45e-10!115;UBERON:0004177!2.80e-09!7;UBERON:0002370!4.99e-08!4;UBERON:0005058!4.99e-08!4;UBERON:0009113!4.99e-08!4;UBERON:0003295!4.99e-08!4;UBERON:0005562!4.99e-08!4 | ||
|ontology_enrichment_uberon_v019=UBERON:0000178;4.66e-20;15!UBERON:0000179;4.66e-20;15!UBERON:0000463;4.66e-20;15!UBERON:0002390;2.15e-15;32!UBERON:0004177;2.58e-10;5!UBERON:0005057;2.58e-10;5!UBERON:0002193;3.83e-10;42!UBERON:0002370;1.74e-07;2!UBERON:0005058;1.74e-07;2!UBERON:0009113;1.74e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,4.21e-20,15;UBERON:0000179,4.21e-20,15;UBERON:0000463,4.21e-20,15;UBERON:0004177,2.28e-11,7;UBERON:0005057,2.28e-11,7;UBERON:0002370,3.19e-08,4;UBERON:0005058,3.19e-08,4;UBERON:0009113,3.19e-08,4;UBERON:0003295,3.19e-08,4;UBERON:0005562,3.19e-08,4 | |||
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| ||
|short_description=p4@SCML4 | |short_description=p4@SCML4 | ||
}} | }} |
Latest revision as of 16:53, 19 September 2015
Short description: | p4@SCML4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_SCML4_5end |
Coexpression cluster: | C18_CD4_CD8_thymus_Whole_Peripheral_Natural_blood |
Association with transcript: | -15bp_to_ENST00000369022, NM_198081, uc003prz.3, uc010kdf.2, uc011eam.1_5end |
EntrezGene: | SCML4 |
HGNC: | 21397 |
UniProt: | Q8N228 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mature alpha-beta T cell | 3.47e-46 | 18 |
alpha-beta T cell | 3.47e-46 | 18 |
immature T cell | 3.47e-46 | 18 |
mature T cell | 3.47e-46 | 18 |
immature alpha-beta T cell | 3.47e-46 | 18 |
lymphoid lineage restricted progenitor cell | 6.16e-44 | 52 |
lymphocyte | 5.78e-43 | 53 |
common lymphoid progenitor | 5.78e-43 | 53 |
CD8-positive, alpha-beta T cell | 5.21e-37 | 11 |
T cell | 4.68e-32 | 25 |
pro-T cell | 4.68e-32 | 25 |
leukocyte | 3.80e-24 | 136 |
nongranular leukocyte | 4.84e-23 | 115 |
hematopoietic stem cell | 5.07e-19 | 168 |
hematopoietic cell | 1.39e-17 | 177 |
hematopoietic lineage restricted progenitor cell | 3.17e-17 | 120 |
B cell | 9.42e-17 | 14 |
hematopoietic oligopotent progenitor cell | 2.25e-16 | 161 |
hematopoietic multipotent progenitor cell | 2.25e-16 | 161 |
CD4-positive, alpha-beta T cell | 3.60e-14 | 6 |
natural killer cell | 3.15e-11 | 3 |
pro-NK cell | 3.15e-11 | 3 |
single nucleate cell | 1.33e-10 | 3 |
mononuclear cell | 1.33e-10 | 3 |
lymphocyte of B lineage | 4.32e-09 | 24 |
pro-B cell | 4.32e-09 | 24 |
Ontology term | p-value | n |
---|---|---|
blood | 4.21e-20 | 15 |
haemolymphatic fluid | 4.21e-20 | 15 |
organism substance | 4.21e-20 | 15 |
hemopoietic organ | 2.28e-11 | 7 |
immune organ | 2.28e-11 | 7 |
thymus | 3.19e-08 | 4 |
hemolymphoid system gland | 3.19e-08 | 4 |
thymic region | 3.19e-08 | 4 |
pharyngeal gland | 3.19e-08 | 4 |
thymus primordium | 3.19e-08 | 4 |