FFCP PHASE1:Hg19::chr9:100881466..100881531,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr9:100881466..100881531,- to FFCP PHASE1:Hg19::chr9:100881466..100881531,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=9830 | |EntrezGene=9830 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=16283 | |HGNC=16283 | ||
|TSSclassifier=strong | |||
|UniProt=Q14142,Q548W9,F2Z2M2 | |UniProt=Q14142,Q548W9,F2Z2M2 | ||
|association_with_transcript=0bp_to_ENST00000341469,ENST00000342043,ENST00000375084,ENST00000375092,ENST00000375098,ENST00000475147,NM_014788,NM_033219,NM_033220,uc004ayd.2,uc004ayf.1,uc004ayg.1,uc004ayh.1,uc004ayi.1,uc004ayj.1_5end | |||
|cluster_id=chr9:100881466..100881531,- | |||
|description=CAGE_peak_1_at_TRIM14_5end | |||
|id=chr9:100881466..100881531,- | |||
|ontology_enrichment_celltype=CL:0002087!3.38e-24!119;CL:0002031!9.13e-17!124;CL:0000738!3.22e-16!140;CL:0000037!2.29e-15!172;CL:0000566!2.29e-15!172;CL:0002032!7.78e-14!165;CL:0000837!7.78e-14!165;CL:0000988!3.71e-13!182;CL:0000542!4.86e-12!53;CL:0000051!4.86e-12!53;CL:0000838!6.84e-12!52;CL:0002194!1.32e-11!63;CL:0000576!1.32e-11!63;CL:0000040!1.32e-11!63;CL:0000559!1.32e-11!63;CL:0002009!3.05e-10!65;CL:0000084!2.02e-09!25;CL:0000827!2.02e-09!25;CL:0000791!1.54e-08!18;CL:0000789!1.54e-08!18;CL:0002420!1.54e-08!18;CL:0002419!1.54e-08!18;CL:0000790!1.54e-08!18;CL:0000557!8.44e-08!71;CL:0000839!1.94e-07!70;CL:0000766!3.17e-07!76 | |||
|ontology_enrichment_celltype_v019=CL:0000084;1.61e-09;25!CL:0000791;1.46e-08;18!CL:0000789;1.46e-08;18!CL:0002419;1.46e-08;18 | |||
|ontology_enrichment_celltype_v019_2=CL:0002087,5.93e-23,115;CL:0002031,1.27e-15,120;CL:0000738,4.29e-15,136;CL:0000037,2.50e-14,168;CL:0002032,7.75e-13,161;CL:0000837,7.75e-13,161;CL:0000988,3.67e-12,177;CL:0000542,4.22e-12,53;CL:0000051,4.22e-12,53;CL:0000838,5.93e-12,52;CL:0002194,1.82e-10,59;CL:0000576,1.82e-10,59;CL:0000040,1.82e-10,59;CL:0000559,1.82e-10,59;CL:0000084,1.71e-09,25;CL:0000827,1.71e-09,25;CL:0002009,4.04e-09,61;CL:0000791,1.51e-08,18;CL:0000789,1.51e-08,18;CL:0002420,1.51e-08,18;CL:0002419,1.51e-08,18;CL:0000790,1.51e-08,18;CL:0000473,6.05e-07,48;CL:0000234,6.05e-07,48;CL:0000557,8.19e-07,67 | |||
|ontology_enrichment_development_v019=CL:0000790;1.46e-08;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001007!1.00e-12!155;UBERON:0001555!1.00e-12!155;UBERON:0007026!1.00e-12!155;UBERON:0004119!3.48e-12!169;UBERON:0000925!3.48e-12!169;UBERON:0006595!3.48e-12!169;UBERON:0004921!1.91e-10!129;UBERON:0004185!1.91e-10!129;UBERON:0002390!4.64e-10!102;UBERON:0003061!4.64e-10!102;UBERON:0002405!7.95e-10!115;UBERON:0002193!3.61e-09!112;UBERON:0000077!2.32e-08!130;UBERON:0005911!3.04e-08!82;UBERON:0001041!1.23e-07!98 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001007,7.30e-12,145;UBERON:0001555,7.30e-12,145;UBERON:0007026,7.30e-12,145;UBERON:0004119,3.96e-11,160;UBERON:0000925,3.96e-11,160;UBERON:0006595,3.96e-11,160;UBERON:0004921,7.44e-10,118;UBERON:0002390,5.11e-09,98;UBERON:0003061,5.11e-09,98;UBERON:0002193,3.58e-08,108;UBERON:0005911,3.94e-08,82;UBERON:0001041,4.61e-07,87;UBERON:0002405,7.67e-07,93 | |||
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| ||
|short_description=p1@TRIM14 | |||
}} | }} |
Latest revision as of 18:38, 19 September 2015
Short description: | p1@TRIM14 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_TRIM14_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000341469, ENST00000342043, ENST00000375084, ENST00000375092, ENST00000375098, ENST00000475147, NM_014788, NM_033219, NM_033220, uc004ayd.2, uc004ayf.1, uc004ayg.1, uc004ayh.1, uc004ayi.1, uc004ayj.1_5end |
EntrezGene: | TRIM14 |
HGNC: | 16283 |
UniProt: | Q14142Q548W9F2Z2M2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
nongranular leukocyte | 5.93e-23 | 115 |
hematopoietic lineage restricted progenitor cell | 1.27e-15 | 120 |
leukocyte | 4.29e-15 | 136 |
hematopoietic stem cell | 2.50e-14 | 168 |
hematopoietic oligopotent progenitor cell | 7.75e-13 | 161 |
hematopoietic multipotent progenitor cell | 7.75e-13 | 161 |
hematopoietic cell | 3.67e-12 | 177 |
lymphocyte | 4.22e-12 | 53 |
common lymphoid progenitor | 4.22e-12 | 53 |
lymphoid lineage restricted progenitor cell | 5.93e-12 | 52 |
monopoietic cell | 1.82e-10 | 59 |
monocyte | 1.82e-10 | 59 |
monoblast | 1.82e-10 | 59 |
promonocyte | 1.82e-10 | 59 |
T cell | 1.71e-09 | 25 |
pro-T cell | 1.71e-09 | 25 |
macrophage dendritic cell progenitor | 4.04e-09 | 61 |
mature alpha-beta T cell | 1.51e-08 | 18 |
alpha-beta T cell | 1.51e-08 | 18 |
immature T cell | 1.51e-08 | 18 |
mature T cell | 1.51e-08 | 18 |
immature alpha-beta T cell | 1.51e-08 | 18 |
defensive cell | 6.05e-07 | 48 |
phagocyte | 6.05e-07 | 48 |
granulocyte monocyte progenitor cell | 8.19e-07 | 67 |
Ontology term | p-value | n |
---|---|---|
digestive system | 7.30e-12 | 145 |
digestive tract | 7.30e-12 | 145 |
primitive gut | 7.30e-12 | 145 |
endoderm-derived structure | 3.96e-11 | 160 |
endoderm | 3.96e-11 | 160 |
presumptive endoderm | 3.96e-11 | 160 |
subdivision of digestive tract | 7.44e-10 | 118 |
hematopoietic system | 5.11e-09 | 98 |
blood island | 5.11e-09 | 98 |
hemolymphoid system | 3.58e-08 | 108 |
endo-epithelium | 3.94e-08 | 82 |
foregut | 4.61e-07 | 87 |
immune system | 7.67e-07 | 93 |