FFCP PHASE1:Hg19::chr14:35452304..35452319,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=6729 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11301 | |||
|TSSclassifier=strong | |||
|UniProt=G3V3L9 | |||
|association_with_transcript=0bp_to_ENST00000556380_5end | |||
|cluster_id=chr14:35452304..35452319,+ | |||
|coexpression_cluster_id=C1561 | |||
|description=CAGE_peak_4_at_SRP54_5end | |||
|id=chr14:35452304..35452319,+ | |||
|ontology_enrichment_celltype=CL:0000012!3.99e-24!682;CL:0000037!8.85e-24!172;CL:0000566!8.85e-24!172;CL:0000763!2.72e-23!112;CL:0000049!2.72e-23!112;CL:0000988!2.83e-23!182;CL:0000548!1.95e-22!679;CL:0000004!1.95e-22!679;CL:0000255!1.95e-22!679;CL:0000034!4.70e-22!444;CL:0002032!5.27e-22!165;CL:0000837!5.27e-22!165;CL:0000048!2.99e-20!430;CL:0000723!6.51e-20!436;CL:0000003!1.39e-18!722;CL:0000738!2.91e-18!140;CL:0000766!2.25e-17!76;CL:0000144!5.59e-17!625;CL:0000839!3.25e-16!70;CL:0000557!3.48e-16!71;CL:0002031!1.20e-15!124;CL:0002057!5.58e-15!42;CL:0000860!1.23e-14!45;CL:0002009!1.27e-14!65;CL:0000063!1.77e-14!578;CL:0000134!7.28e-14!358;CL:0002194!1.63e-13!63;CL:0000576!1.63e-13!63;CL:0000040!1.63e-13!63;CL:0000559!1.63e-13!63;CL:0002087!5.58e-13!119;CL:0002320!2.13e-12!365;CL:0002371!8.41e-12!591;CL:0000219!1.28e-10!390 | |||
|ontology_enrichment_celltype_v019=CL:0000860;3.33e-14;33!CL:0002057;3.33e-14;33!CL:0000473;4.92e-11;39!CL:0000234;4.92e-11;39!CL:0000576;1.11e-09;48!CL:0000766;1.66e-08;69!CL:0000763;2.87e-07;100 | |||
|ontology_enrichment_celltype_v019_2=CL:0000763,4.22e-24,108;CL:0000049,4.22e-24,108;CL:0000988,1.35e-23,177;CL:0000037,1.88e-23,168;CL:0000034,3.83e-22,441;CL:0002032,1.24e-21,161;CL:0000837,1.24e-21,161;CL:0000048,3.49e-20,427;CL:0000723,5.88e-20,433;CL:0000766,1.13e-18,72;CL:0000738,4.28e-18,136;CL:0000839,2.88e-17,66;CL:0000557,3.17e-17,67;CL:0002009,1.37e-15,61;CL:0000860,1.53e-15,42;CL:0002057,1.53e-15,42;CL:0002031,1.93e-15,120;CL:0002194,2.10e-14,59;CL:0000576,2.10e-14,59;CL:0000040,2.10e-14,59;CL:0000559,2.10e-14,59;CL:0000473,2.55e-14,48;CL:0000234,2.55e-14,48;CL:0000134,4.71e-14,354;CL:0002087,1.05e-12,115;CL:0002320,1.41e-12,361;CL:0000219,9.38e-11,386 | |||
|ontology_enrichment_development_v019=CL:0002057;9.92e-12;42!CL:0000049;4.88e-07;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002371!4.37e-13!80;UBERON:0001474!4.18e-12!86;UBERON:0002384!5.17e-12!375;UBERON:0002390!8.19e-12!102;UBERON:0003061!8.19e-12!102;UBERON:0002204!7.65e-11!167;UBERON:0002405!2.90e-10!115;UBERON:0002193!7.01e-10!112;UBERON:0003081!8.07e-10!216;UBERON:0004765!1.69e-09!101;UBERON:0001434!1.69e-09!101;UBERON:0001737!5.64e-07!9 | |||
|ontology_enrichment_uberon_v019=UBERON:0001737;2.81e-07;9!UBERON:0001557;2.81e-07;9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,9.43e-14,76;UBERON:0003081,1.28e-12,203;UBERON:0001474,2.19e-12,82;UBERON:0002390,2.42e-12,98;UBERON:0003061,2.42e-12,98;UBERON:0002384,4.27e-12,371;UBERON:0004765,4.37e-11,90;UBERON:0002405,6.99e-11,93;UBERON:0002193,1.16e-10,108;UBERON:0002204,1.93e-09,167;UBERON:0001434,6.03e-08,100;UBERON:0000926,7.75e-08,315;UBERON:0004120,7.75e-08,315;UBERON:0006603,7.75e-08,315;UBERON:0001737,3.34e-07,9 | |||
|phase1_expression=2.18014055124668,1.2846031433459,1.40954404095971,0,0.893922188854576,0,0,1.89515962028049,0.522371256399677,0.245733936501509,0.697801167972428,0.873765488520689,0.527533956456907,0.990130823680373,2.31978163009541,6.72325146451775,3.61616716814386,5.11217063271161,3.90346239032406,0.369363174230364,0.204000691244253,0,0.572471974262113,1.50561867580173,0.627713197974014,2.59805579543034,3.03772180964799,3.30585281517453,2.36018566109342,5.37361157336098,3.2511385896376,1.83884244895785,0.90361775633475,1.10926203050036,0.92960640696362,3.9807385096478,2.64240395401362,3.87796785972314,5.01361118675354,5.64228263861215,0.447830948479849,2.59114932815184,2.31818010870768,4.07115068582781,3.02300754951048,4.36651310138069,3.0215774797739,6.16751832032739,12.6979612066992,5.17846306179871,6.66017836975662,13.7159693335379,5.17118521104928,10.973239620925,18.9597081232078,4.51781614902251,4.63940455098338,10.1125568000288,7.34601341690166,11.2325159476633,10.8687311385837,5.60747210317417,5.78444607102732,8.09827026012119,3.77272010217159,4.53908179752912,4.9825779919646,6.28121663141858,9.90817544998383,12.8141418376019,5.44859552370032,11.7848843516021,19.9371304087757,1.90129757680748,2.76385589954557,3.77385561915077,2.3589012540764,1.50176892841506,2.57160938715328,1.14005097496499,1.9891667719909,2.00930569141097,7.03984977845291,0.546138611262131,0.889509253863555,2.98711155796555,0,0.574752439954483,1.32208974556972,0,3.98449078376614,3.52342313622563,4.58727873750275,11.8954195721123,11.2101712596307,3.68737718685108,5.11445402295966,4.32311839024081,11.9248869419715,0.334372990781356,3.2592226663359,1.89379122293893,3.89653456815823,0.334231370655521,3.53527088969805,1.10766947291811,2.16643091012012,0.25618263945135,0.780356085359269,0.493313713811028,0.829050053357545,1.44901542867526,3.11401782640327,1.87278579662799,1.04535523804977,1.0197840842781,3.44898444241729,4.46715679127419,3.28925599625354,0,0.651083453856419,0.950452044448374,0.752875595388864,0.76791966692651,0,0.473554504088034,0.821127996921047,11.6931911070345,9.62784704820626,9.12393744461634,2.43806866313962,8.04841031644363,8.69465420536006,2.1686349143074,1.00267582127178,0.579386075843295,0.795285947051099,1.94653948121054,0.850813354476611,1.10864698731282,2.54720878510066,1.76821751921912,0,0.370784442784429,2.59637914923747,3.30846500868608,3.45690697349049,3.10037811596945,2.85997455390064,3.34311751196608,2.98143611050058,0.860234595106124,0.694281003215189,0.56530794192401,4.61449379830897,1.92582629358047,2.92592953151535,1.55050055501597,3.5576626268671,1.67360306382335,1.61131726843659,0.760272105718513,0.732186172644509,4.77962004449629,2.43042584364528,2.76829157680647,1.34717623575702,1.23872628531654,0,3.79706263827252,2.38162267109529,77.7504462872773,65.9226449052153,0,1.98788780678127,2.15271869829786,6.62045904066094,3.44203944898576,1.06400514659507,3.92474320099615,8.5399196583764,2.71334303258876,2.17847724779836,3.23305612967251,2.28846664358842,0.454072282934794,2.88087962239999,0,0.936480230490962,1.71141546463335,0.298897361103602,1.17434498643765,0.323745888736263,1.40450806702248,0.204154171254893,0.122834317311768,0.413303124703062,0,0.247266929278557,0,0,0.168336113954066,1.12606667884768,1.10825646193673,0.438977620880838,0.919463387397059,0.45071417671979,9.52830338544177,2.15267562826634,1.06778694409284,1.27159140695737,0.900273288253207,1.03052529238439,2.31876486041066,1.30281799432113,2.19409231913646,2.53336213419116,2.27190396819703,1.01254888506529,0.161646056818812,2.4850671476163,2.72030665214629,1.18692414617341,2.51239109112286,3.54569956768085,2.58124135850103,2.43947412259191,4.24095258628753,3.02104251460748,1.55491582523056,3.5324919122588,5.47466038613745,0,0.643240938192885,0,0.464367928031979,1.44375896333917,10.6476120035859,13.31819051617,11.8095404642906,8.71322384585912,8.71517776369625,11.6262603364437,10.651673344653,9.8110732562673,15.0051391209092,0,0,1.6462960453256,1.47008711385542,3.80265104465493,3.9313088667105,2.36315962672562,3.97316789473185,5.04252598026766,3.94605963686609,2.85350742062426,0,2.41269533787914,1.01847289674383,0.651616610620649,0,1.44331342025273,0.811512834825538,1.40890433082986,1.29929802984966,1.38895653772983,3.42457474022277,0.790204397959275,0.858486162094873,0.738651018262192,6.31811515875942,2.97262324577457,1.87467667973554,3.69560682037491,6.09632918142262,1.43293636324557,2.90633938513962,0.766765358330422,81.2894342528307,2.55340458638356,7.04915592838625,3.747118788841,7.06957627187728,1.39695367442772,0,1.17217447210047,0,0.822619941626588,2.40274446275134,1.14330573052231,0.897048674762886,0.43596006883328,2.2001485746285,5.68795549334222,0,4.22651376278,2.6593811658487,3.12022310734098,1.02882949704857,0,1.0656887160644,2.00169191121407,0,1.64648067356154,2.60588947434988,2.48774364119782,2.37585561880029,8.13886318060882,6.97226766880235,6.29829844446959,2.43247561282381,2.00902836572851,0,5.99062138728957,1.14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| |||
|short_description=p4@SRP54 | |||
}} |
Latest revision as of 19:50, 19 September 2015
Short description: | p4@SRP54 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_SRP54_5end |
Coexpression cluster: | C1561_Mast_Eosinophils_Neutrophils_CD14_immature_Whole_Hep2 |
Association with transcript: | 0bp_to_ENST00000556380_5end |
EntrezGene: | SRP54 |
HGNC: | 11301 |
UniProt: | G3V3L9 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
myeloid cell | 4.22e-24 | 108 |
common myeloid progenitor | 4.22e-24 | 108 |
hematopoietic cell | 1.35e-23 | 177 |
hematopoietic stem cell | 1.88e-23 | 168 |
stem cell | 3.83e-22 | 441 |
hematopoietic oligopotent progenitor cell | 1.24e-21 | 161 |
hematopoietic multipotent progenitor cell | 1.24e-21 | 161 |
multi fate stem cell | 3.49e-20 | 427 |
somatic stem cell | 5.88e-20 | 433 |
myeloid leukocyte | 1.13e-18 | 72 |
leukocyte | 4.28e-18 | 136 |
myeloid lineage restricted progenitor cell | 2.88e-17 | 66 |
granulocyte monocyte progenitor cell | 3.17e-17 | 67 |
macrophage dendritic cell progenitor | 1.37e-15 | 61 |
classical monocyte | 1.53e-15 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.53e-15 | 42 |
hematopoietic lineage restricted progenitor cell | 1.93e-15 | 120 |
monopoietic cell | 2.10e-14 | 59 |
monocyte | 2.10e-14 | 59 |
monoblast | 2.10e-14 | 59 |
promonocyte | 2.10e-14 | 59 |
defensive cell | 2.55e-14 | 48 |
phagocyte | 2.55e-14 | 48 |
mesenchymal cell | 4.71e-14 | 354 |
nongranular leukocyte | 1.05e-12 | 115 |
connective tissue cell | 1.41e-12 | 361 |
motile cell | 9.38e-11 | 386 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 9.43e-14 | 76 |
lateral plate mesoderm | 1.28e-12 | 203 |
bone element | 2.19e-12 | 82 |
hematopoietic system | 2.42e-12 | 98 |
blood island | 2.42e-12 | 98 |
connective tissue | 4.27e-12 | 371 |
skeletal element | 4.37e-11 | 90 |
immune system | 6.99e-11 | 93 |
hemolymphoid system | 1.16e-10 | 108 |
musculoskeletal system | 1.93e-09 | 167 |
skeletal system | 6.03e-08 | 100 |
mesoderm | 7.75e-08 | 315 |
mesoderm-derived structure | 7.75e-08 | 315 |
presumptive mesoderm | 7.75e-08 | 315 |
larynx | 3.34e-07 | 9 |