FFCP PHASE1:Hg19::chr3:119298314..119298392,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr3:119298314..119298392,+
|short_description=p2@ADPRH
|description=CAGE_peak_2_at_ADPRH_5end
|association_with_transcript=0bp_to_ENST00000485496_5end
|Entrez...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=141 | |EntrezGene=141 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=269 | |HGNC=269 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000485496_5end | |||
|cluster_id=chr3:119298314..119298392,+ | |||
|coexpression_cluster_id=C2675 | |||
|description=CAGE_peak_2_at_ADPRH_5end | |||
|id=chr3:119298314..119298392,+ | |||
|ontology_enrichment_celltype=CL:0000557!6.12e-31!71;CL:0002009!3.70e-29!65;CL:0000839!5.49e-29!70;CL:0002194!8.11e-28!63;CL:0000576!8.11e-28!63;CL:0000040!8.11e-28!63;CL:0000559!8.11e-28!63;CL:0002057!8.36e-27!42;CL:0000766!1.23e-26!76;CL:0000860!8.74e-23!45;CL:0000763!4.90e-14!112;CL:0000049!4.90e-14!112;CL:0002031!1.93e-12!124;CL:0000738!2.58e-12!140;CL:0002087!5.18e-11!119;CL:0000988!3.11e-07!182 | |||
|ontology_enrichment_celltype_v019=CL:0000860;1.99e-27;33!CL:0002057;1.99e-27;33!CL:0000473;4.56e-26;39!CL:0000234;4.56e-26;39!CL:0000576;1.03e-23;48!CL:0000766;4.00e-19;69!CL:0000763;1.19e-07;100!CL:0000738;4.07e-07;136 | |||
|ontology_enrichment_celltype_v019_2=CL:0000557,6.64e-45,67;CL:0002009,4.56e-42,61;CL:0000839,5.93e-42,66;CL:0000766,1.95e-40,72;CL:0002194,3.19e-40,59;CL:0000576,3.19e-40,59;CL:0000040,3.19e-40,59;CL:0000559,3.19e-40,59;CL:0000473,4.34e-39,48;CL:0000234,4.34e-39,48;CL:0000860,1.91e-35,42;CL:0002057,1.91e-35,42;CL:0000763,1.67e-26,108;CL:0000049,1.67e-26,108;CL:0000738,2.00e-23,136;CL:0002031,5.36e-22,120;CL:0002087,1.36e-19,115;CL:0000988,2.13e-16,177;CL:0000037,1.86e-15,168;CL:0002032,2.07e-15,161;CL:0000837,2.07e-15,161;CL:0000134,4.71e-11,354;CL:0002320,4.72e-10,361;CL:0000219,2.91e-09,386;CL:0000048,3.89e-09,427;CL:0000723,2.04e-08,433;CL:0000034,7.71e-08,441;CL:0002393,4.86e-07,9;CL:0002397,4.86e-07,9 | |||
|ontology_enrichment_development_v019=CL:0002057;7.08e-26;42!CL:0000049;3.86e-08;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002193!7.92e-30!112;UBERON:0002371!5.75e-29!80;UBERON:0003081!9.00e-28!216;UBERON:0002390!1.75e-27!102;UBERON:0003061!1.75e-27!102;UBERON:0001474!1.66e-24!86;UBERON:0002405!7.89e-24!115;UBERON:0004765!1.43e-20!101;UBERON:0001434!1.43e-20!101;UBERON:0002204!5.34e-15!167;UBERON:0000926!1.86e-10!448;UBERON:0004120!1.86e-10!448;UBERON:0006603!1.86e-10!448;UBERON:0000480!4.27e-08!626;UBERON:0000468!4.41e-08!659;UBERON:0000467!4.55e-08!625 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002405,8.34e-43,93;UBERON:0002193,2.70e-41,108;UBERON:0002371,3.48e-41,76;UBERON:0002390,9.38e-38,98;UBERON:0003061,9.38e-38,98;UBERON:0001474,6.41e-36,82;UBERON:0003081,2.32e-30,203;UBERON:0004765,4.53e-30,90;UBERON:0001434,1.07e-27,100;UBERON:0000926,1.59e-22,315;UBERON:0004120,1.59e-22,315;UBERON:0006603,1.59e-22,315;UBERON:0002204,1.52e-17,167;UBERON:0002384,1.70e-09,371 | |||
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| ||
|short_description=p2@ADPRH | |||
}} | }} |
Latest revision as of 20:28, 19 September 2015
Short description: | p2@ADPRH |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_ADPRH_5end |
Coexpression cluster: | C2675_Mast_CD14_immature_placenta_Basophils_Renal_chorionic |
Association with transcript: | 0bp_to_ENST00000485496_5end |
EntrezGene: | ADPRH |
HGNC: | 269 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
granulocyte monocyte progenitor cell | 6.64e-45 | 67 |
macrophage dendritic cell progenitor | 4.56e-42 | 61 |
myeloid lineage restricted progenitor cell | 5.93e-42 | 66 |
myeloid leukocyte | 1.95e-40 | 72 |
monopoietic cell | 3.19e-40 | 59 |
monocyte | 3.19e-40 | 59 |
monoblast | 3.19e-40 | 59 |
promonocyte | 3.19e-40 | 59 |
defensive cell | 4.34e-39 | 48 |
phagocyte | 4.34e-39 | 48 |
classical monocyte | 1.91e-35 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.91e-35 | 42 |
myeloid cell | 1.67e-26 | 108 |
common myeloid progenitor | 1.67e-26 | 108 |
leukocyte | 2.00e-23 | 136 |
hematopoietic lineage restricted progenitor cell | 5.36e-22 | 120 |
nongranular leukocyte | 1.36e-19 | 115 |
hematopoietic cell | 2.13e-16 | 177 |
hematopoietic stem cell | 1.86e-15 | 168 |
hematopoietic oligopotent progenitor cell | 2.07e-15 | 161 |
hematopoietic multipotent progenitor cell | 2.07e-15 | 161 |
mesenchymal cell | 4.71e-11 | 354 |
connective tissue cell | 4.72e-10 | 361 |
motile cell | 2.91e-09 | 386 |
multi fate stem cell | 3.89e-09 | 427 |
somatic stem cell | 2.04e-08 | 433 |
stem cell | 7.71e-08 | 441 |
intermediate monocyte | 4.86e-07 | 9 |
CD14-positive, CD16-positive monocyte | 4.86e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
immune system | 8.34e-43 | 93 |
hemolymphoid system | 2.70e-41 | 108 |
bone marrow | 3.48e-41 | 76 |
hematopoietic system | 9.38e-38 | 98 |
blood island | 9.38e-38 | 98 |
bone element | 6.41e-36 | 82 |
lateral plate mesoderm | 2.32e-30 | 203 |
skeletal element | 4.53e-30 | 90 |
skeletal system | 1.07e-27 | 100 |
mesoderm | 1.59e-22 | 315 |
mesoderm-derived structure | 1.59e-22 | 315 |
presumptive mesoderm | 1.59e-22 | 315 |
musculoskeletal system | 1.52e-17 | 167 |
connective tissue | 1.70e-09 | 371 |