FFCP PHASE1:Hg19::chr12:65146717..65146754,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr12:65146717..65146754,-
|short_description=p4@GNS
|description=CAGE_peak_4_at_GNS_5end
|association_with_transcript=0bp_to_ENST00000545273_5end
|EntrezGene=...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=2799 | |EntrezGene=2799 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4422 | |HGNC=4422 | ||
|TSSclassifier=strong | |||
|UniProt=F5H4C6 | |UniProt=F5H4C6 | ||
|association_with_transcript=0bp_to_ENST00000545273_5end | |||
|cluster_id=chr12:65146717..65146754,- | |||
|coexpression_cluster_id=C17 | |||
|description=CAGE_peak_4_at_GNS_5end | |||
|id=chr12:65146717..65146754,- | |||
|ontology_enrichment_celltype=CL:0000763!2.10e-15!112;CL:0000049!2.10e-15!112;CL:0002274!4.23e-14!5;CL:0000457!4.23e-14!5;CL:0002191!4.23e-14!5;CL:0000097!4.23e-14!5;CL:0000831!4.23e-14!5;CL:0002028!4.23e-14!5;CL:0000839!2.28e-12!70;CL:0000766!7.89e-10!76;CL:0000557!1.01e-09!71;CL:0002032!1.75e-08!165;CL:0000837!1.75e-08!165;CL:0000037!1.93e-08!172;CL:0000566!1.93e-08!172;CL:0002139!4.93e-08!24;CL:0000163!1.39e-07!9;CL:0000988!1.60e-07!182 | |||
|ontology_enrichment_celltype_v019=CL:0000097;2.97e-66;5!CL:0000163;6.45e-37;9!CL:0002591;2.75e-14;1!CL:0000763;3.00e-09;100!CL:0000151;1.39e-08;36 | |||
|ontology_enrichment_celltype_v019_2=CL:0000097,2.78e-66,5;CL:0002028,2.78e-66,5;CL:0000163,6.21e-37,9;CL:0000763,3.99e-19,108;CL:0000049,3.99e-19,108;CL:0002591,3.15e-14,1;CL:0002032,2.18e-12,161;CL:0000837,2.18e-12,161;CL:0000037,8.21e-12,168;CL:0000988,3.89e-11,177;CL:0000151,2.97e-09,36;CL:0000839,7.69e-07,66;CL:0000557,9.82e-07,67 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:8692;5.50e-20;31!DOID:1036;1.10e-15;8!DOID:8552;1.61e-14;1!DOID:1240;1.42e-12;39!DOID:2531;6.08e-07;51!DOID:0060083;6.08e-07;51 | |||
|ontology_enrichment_disease_v019_2=DOID:8692,2.03e-20,31;DOID:1240,3.90e-16,39;DOID:1036,1.10e-15,8;DOID:8552,1.84e-14,1;DOID:2531,3.22e-12,51;DOID:0060083,3.22e-12,51 | |||
|ontology_enrichment_uberon=UBERON:0002371!4.59e-08!80;UBERON:0002193!9.75e-08!112;UBERON:0001474!3.66e-07!86 | |||
|ontology_enrichment_uberon_v019=UBERON:0000078;8.60e-08;2!UBERON:0002012;8.60e-08;2!UBERON:0008886;8.60e-08;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000078,9.19e-08,2;UBERON:0007497,9.19e-08,2;UBERON:0003643,9.19e-08,2;UBERON:0003504,9.19e-08,2;UBERON:0003469,9.19e-08,2;UBERON:0003496,9.19e-08,2;UBERON:0002012,9.19e-08,2;UBERON:0008886,9.19e-08,2;UBERON:0007303,9.19e-08,2;UBERON:0002061,9.19e-08,2;UBERON:0005432,9.19e-08,2;UBERON:0004363,9.19e-08,2 | |||
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| ||
|short_description=p4@GNS | |||
}} | }} |
Latest revision as of 21:35, 19 September 2015
Short description: | p4@GNS |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_GNS_5end |
Coexpression cluster: | C17_Mast_CD14_Monocytederived_Lymphatic_Smooth_mesenchymal_Macrophage |
Association with transcript: | 0bp_to_ENST00000545273_5end |
EntrezGene: | GNS |
HGNC: | 4422 |
UniProt: | F5H4C6 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mast cell | 2.78e-66 | 5 |
basophil mast progenitor cell | 2.78e-66 | 5 |
endocrine cell | 6.21e-37 | 9 |
myeloid cell | 3.99e-19 | 108 |
common myeloid progenitor | 3.99e-19 | 108 |
smooth muscle cell of the pulmonary artery | 3.15e-14 | 1 |
hematopoietic oligopotent progenitor cell | 2.18e-12 | 161 |
hematopoietic multipotent progenitor cell | 2.18e-12 | 161 |
hematopoietic stem cell | 8.21e-12 | 168 |
hematopoietic cell | 3.89e-11 | 177 |
secretory cell | 2.97e-09 | 36 |
myeloid lineage restricted progenitor cell | 7.69e-07 | 66 |
granulocyte monocyte progenitor cell | 9.82e-07 | 67 |
Ontology term | p-value | n |
---|---|---|
mixed ectoderm/mesoderm/endoderm-derived structure | 9.19e-08 | 2 |
developing epithelial placode | 9.19e-08 | 2 |
respiratory system arterial blood vessel | 9.19e-08 | 2 |
respiratory system blood vessel | 9.19e-08 | 2 |
respiratory system artery | 9.19e-08 | 2 |
head blood vessel | 9.19e-08 | 2 |
pulmonary artery | 9.19e-08 | 2 |
pulmonary vascular system | 9.19e-08 | 2 |
pharyngeal vasculature | 9.19e-08 | 2 |
truncus arteriosus | 9.19e-08 | 2 |
aortic sac | 9.19e-08 | 2 |
pharyngeal arch artery | 9.19e-08 | 2 |
Ontology term | p-value | n |
---|---|---|
myeloid leukemia | 2.03e-20 | 31 |
leukemia | 3.90e-16 | 39 |
chronic leukemia | 1.10e-15 | 8 |
chronic myeloid leukemia | 1.84e-14 | 1 |
hematologic cancer | 3.22e-12 | 51 |
immune system cancer | 3.22e-12 | 51 |