FFCP PHASE1:Hg19::chr12:66218183..66218209,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=8091 | |EntrezGene=8091 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=5009 | |HGNC=5009 | ||
|TSSclassifier=strong | |||
|UniProt=Q1M182,Q1M188,Q1M186,F5H6H0,Q1M187,Q1M185,P52926 | |UniProt=Q1M182,Q1M188,Q1M186,F5H6H0,Q1M187,Q1M185,P52926 | ||
|association_with_transcript=-30bp_to_ENST00000354636,ENST00000393578,ENST00000425208,ENST00000536545,ENST00000537275,ENST00000537429,NM_003483,NM_003484,uc001sss.1,uc001sst.1,uc001ssu.1,uc001ssv.2,uc001ssw.1,uc001ssx.2,uc010ssv.1_5end | |association_with_transcript=-30bp_to_ENST00000354636,ENST00000393578,ENST00000425208,ENST00000536545,ENST00000537275,ENST00000537429,NM_003483,NM_003484,uc001sss.1,uc001sst.1,uc001ssu.1,uc001ssv.2,uc001ssw.1,uc001ssx.2,uc010ssv.1_5end | ||
|cluster_id=chr12:66218183..66218209,+ | |||
|coexpression_cluster_id=C749 | |coexpression_cluster_id=C749 | ||
|description=CAGE_peak_4_at_HMGA2_5end | |description=CAGE_peak_4_at_HMGA2_5end | ||
|id=chr12:66218183..66218209,+ | |id=chr12:66218183..66218209,+ | ||
|ontology_enrichment_celltype=CL:0002321!2.45e-30!248;CL:0000220!2.12e-29!246;CL:0000055!4.54e-26!180;CL:0000012!3.76e-22!682;CL:0000548!8.37e-22!679;CL:0000004!8.37e-22!679;CL:0000255!8.37e-22!679;CL:0000066!6.25e-19!254;CL:0002371!8.15e-18!591;CL:0000144!1.81e-17!625;CL:0000222!9.70e-14!119;CL:0000183!4.85e-13!59;CL:0000393!2.63e-12!60;CL:0000211!2.63e-12!60;CL:0000680!4.14e-12!57;CL:0000056!4.14e-12!57;CL:0000355!4.14e-12!57;CL:0000003!6.97e-12!722;CL:0000187!3.28e-11!54;CL:0000057!3.92e-09!75;CL:0000223!3.30e-08!59;CL:1000449!1.34e-07!16;CL:1000497!1.39e-07!18;CL:0002518!1.39e-07!18;CL:0002076!1.67e-07!43;CL:0000192!2.27e-07!42;CL:0000514!2.27e-07!42;CL:0000221!9.99e-07!71 | |ontology_enrichment_celltype=CL:0002321!2.45e-30!248;CL:0000220!2.12e-29!246;CL:0000055!4.54e-26!180;CL:0000012!3.76e-22!682;CL:0000548!8.37e-22!679;CL:0000004!8.37e-22!679;CL:0000255!8.37e-22!679;CL:0000066!6.25e-19!254;CL:0002371!8.15e-18!591;CL:0000144!1.81e-17!625;CL:0000222!9.70e-14!119;CL:0000183!4.85e-13!59;CL:0000393!2.63e-12!60;CL:0000211!2.63e-12!60;CL:0000680!4.14e-12!57;CL:0000056!4.14e-12!57;CL:0000355!4.14e-12!57;CL:0000003!6.97e-12!722;CL:0000187!3.28e-11!54;CL:0000057!3.92e-09!75;CL:0000223!3.30e-08!59;CL:1000449!1.34e-07!16;CL:1000497!1.39e-07!18;CL:0002518!1.39e-07!18;CL:0002076!1.67e-07!43;CL:0000192!2.27e-07!42;CL:0000514!2.27e-07!42;CL:0000221!9.99e-07!71 | ||
|ontology_enrichment_celltype_v019=CL:1000449;9.39e-08;15!CL:1000497;1.04e-07;17!CL:0002518;1.04e-07;17!CL:0000187;1.29e-07;55!CL:0000393;3.33e-07;61!CL:0000211;3.33e-07;61 | |||
|ontology_enrichment_celltype_v019_2=CL:0002321,3.50e-29,250;CL:0000066,5.42e-16,253;CL:0000393,2.74e-13,61;CL:0000211,2.74e-13,61;CL:0000680,4.53e-13,58;CL:0000056,4.53e-13,58;CL:0000355,4.53e-13,58;CL:0000222,6.48e-13,121;CL:0000187,4.27e-12,55;CL:0000192,2.76e-08,43;CL:0000514,2.76e-08,43;CL:0000223,3.13e-08,58;CL:0000057,5.98e-08,76;CL:1000449,9.85e-08,15;CL:1000497,1.03e-07,17;CL:0002518,1.03e-07,17;CL:0002076,2.68e-07,42;CL:0000115,9.80e-07,36 | |||
|ontology_enrichment_development_v019=CL:0000355;7.67e-08;58 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005256!9.56e-19!143;UBERON:0000490!2.06e-16!138;UBERON:0000119!1.23e-15!312;UBERON:0003914!8.41e-15!118;UBERON:0000486!9.32e-15!82;UBERON:0000483!1.28e-14!309;UBERON:0000914!2.33e-14!83;UBERON:0002329!2.33e-14!83;UBERON:0003077!2.33e-14!83;UBERON:0003059!2.33e-14!83;UBERON:0007282!2.33e-14!83;UBERON:0009618!2.33e-14!83;UBERON:0007285!2.33e-14!83;UBERON:0002100!4.19e-14!216;UBERON:0003104!1.52e-12!238;UBERON:0009142!1.52e-12!238;UBERON:0000475!2.70e-12!365;UBERON:0002049!2.72e-12!79;UBERON:0007798!2.72e-12!79;UBERON:0000481!3.12e-12!347;UBERON:0004290!3.83e-12!70;UBERON:0001134!2.70e-10!61;UBERON:0002036!2.70e-10!61;UBERON:0003082!2.70e-10!61;UBERON:0002385!1.52e-09!63;UBERON:0001015!1.52e-09!63;UBERON:0000383!1.52e-09!63;UBERON:0000468!7.90e-09!659;UBERON:0000055!1.98e-08!69;UBERON:0001981!2.05e-08!60;UBERON:0007500!2.05e-08!60;UBERON:0004537!2.05e-08!60;UBERON:0006965!2.05e-08!60;UBERON:0004872!2.28e-08!84;UBERON:0001444!3.10e-08!48;UBERON:0003102!5.18e-08!95;UBERON:0000019!6.22e-08!19;UBERON:0000047!6.22e-08!19;UBERON:0004088!6.22e-08!19;UBERON:0003072!6.22e-08!19;UBERON:0003071!6.22e-08!19;UBERON:0004128!6.22e-08!19;UBERON:0000922!6.22e-08!612;UBERON:0004535!8.63e-08!110;UBERON:0004211!1.34e-07!16;UBERON:0001285!1.34e-07!16;UBERON:0007684!1.34e-07!16;UBERON:0003220!1.34e-07!16;UBERON:0004208!1.34e-07!16;UBERON:0000970!1.54e-07!20;UBERON:0005085!1.99e-07!29;UBERON:0001637!2.45e-07!42;UBERON:0003509!2.45e-07!42;UBERON:0004572!2.45e-07!42;UBERON:0006554!2.58e-07!44;UBERON:0000467!3.30e-07!625;UBERON:0001456!3.73e-07!21;UBERON:0001009!3.91e-07!113;UBERON:0000480!4.82e-07!626;UBERON:0001801!7.39e-07!14;UBERON:0001008!7.85e-07!45;UBERON:0002104!9.66e-07!21 | |ontology_enrichment_uberon=UBERON:0005256!9.56e-19!143;UBERON:0000490!2.06e-16!138;UBERON:0000119!1.23e-15!312;UBERON:0003914!8.41e-15!118;UBERON:0000486!9.32e-15!82;UBERON:0000483!1.28e-14!309;UBERON:0000914!2.33e-14!83;UBERON:0002329!2.33e-14!83;UBERON:0003077!2.33e-14!83;UBERON:0003059!2.33e-14!83;UBERON:0007282!2.33e-14!83;UBERON:0009618!2.33e-14!83;UBERON:0007285!2.33e-14!83;UBERON:0002100!4.19e-14!216;UBERON:0003104!1.52e-12!238;UBERON:0009142!1.52e-12!238;UBERON:0000475!2.70e-12!365;UBERON:0002049!2.72e-12!79;UBERON:0007798!2.72e-12!79;UBERON:0000481!3.12e-12!347;UBERON:0004290!3.83e-12!70;UBERON:0001134!2.70e-10!61;UBERON:0002036!2.70e-10!61;UBERON:0003082!2.70e-10!61;UBERON:0002385!1.52e-09!63;UBERON:0001015!1.52e-09!63;UBERON:0000383!1.52e-09!63;UBERON:0000468!7.90e-09!659;UBERON:0000055!1.98e-08!69;UBERON:0001981!2.05e-08!60;UBERON:0007500!2.05e-08!60;UBERON:0004537!2.05e-08!60;UBERON:0006965!2.05e-08!60;UBERON:0004872!2.28e-08!84;UBERON:0001444!3.10e-08!48;UBERON:0003102!5.18e-08!95;UBERON:0000019!6.22e-08!19;UBERON:0000047!6.22e-08!19;UBERON:0004088!6.22e-08!19;UBERON:0003072!6.22e-08!19;UBERON:0003071!6.22e-08!19;UBERON:0004128!6.22e-08!19;UBERON:0000922!6.22e-08!612;UBERON:0004535!8.63e-08!110;UBERON:0004211!1.34e-07!16;UBERON:0001285!1.34e-07!16;UBERON:0007684!1.34e-07!16;UBERON:0003220!1.34e-07!16;UBERON:0004208!1.34e-07!16;UBERON:0000970!1.54e-07!20;UBERON:0005085!1.99e-07!29;UBERON:0001637!2.45e-07!42;UBERON:0003509!2.45e-07!42;UBERON:0004572!2.45e-07!42;UBERON:0006554!2.58e-07!44;UBERON:0000467!3.30e-07!625;UBERON:0001456!3.73e-07!21;UBERON:0001009!3.91e-07!113;UBERON:0000480!4.82e-07!626;UBERON:0001801!7.39e-07!14;UBERON:0001008!7.85e-07!45;UBERON:0002104!9.66e-07!21 | ||
|ontology_enrichment_uberon_v019=UBERON:0000019;1.14e-08;19!UBERON:0000047;1.14e-08;19!UBERON:0004088;1.14e-08;19!UBERON:0010230;1.14e-08;19!UBERON:0001456;6.20e-08;21!UBERON:0003914;7.12e-08;74!UBERON:0000970;7.71e-08;20!UBERON:0006555;9.39e-08;15!UBERON:0004819;9.39e-08;15!UBERON:0001285;9.39e-08;15!UBERON:0007684;9.39e-08;15!UBERON:0001801;2.21e-07;14!UBERON:0006554;2.27e-07;30!UBERON:0001008;2.27e-07;30!UBERON:0007625;3.85e-07;11!UBERON:0002104;4.22e-07;21 | |||
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| ||
|short_description=p4@HMGA2 | |short_description=p4@HMGA2 | ||
}} | }} |
Latest revision as of 23:18, 19 September 2015
Short description: | p4@HMGA2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_HMGA2_5end |
Coexpression cluster: | C749_Wilms_rhabdomyosarcoma_medulloblastoma_fibrous_retinoblastoma_endometrial_schwannoma |
Association with transcript: | -30bp_to_ENST00000354636, ENST00000393578, ENST00000425208, ENST00000536545, ENST00000537275, ENST00000537429, NM_003483, NM_003484, uc001sss.1, uc001sst.1, uc001ssu.1, uc001ssv.2, uc001ssw.1, uc001ssx.2, uc010ssv.1_5end |
EntrezGene: | HMGA2 |
HGNC: | 5009 |
UniProt: | Q1M182Q1M188Q1M186F5H6H0Q1M187Q1M185P52926 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic cell | 3.50e-29 | 250 |
epithelial cell | 5.42e-16 | 253 |
electrically responsive cell | 2.74e-13 | 61 |
electrically active cell | 2.74e-13 | 61 |
muscle precursor cell | 4.53e-13 | 58 |
myoblast | 4.53e-13 | 58 |
multi-potent skeletal muscle stem cell | 4.53e-13 | 58 |
mesodermal cell | 6.48e-13 | 121 |
muscle cell | 4.27e-12 | 55 |
smooth muscle cell | 2.76e-08 | 43 |
smooth muscle myoblast | 2.76e-08 | 43 |
endodermal cell | 3.13e-08 | 58 |
fibroblast | 5.98e-08 | 76 |
epithelial cell of nephron | 9.85e-08 | 15 |
kidney cell | 1.03e-07 | 17 |
kidney epithelial cell | 1.03e-07 | 17 |
endo-epithelial cell | 2.68e-07 | 42 |
endothelial cell | 9.80e-07 | 36 |