FFCP PHASE1:Hg19::chr3:12200368..12200494,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=7079 | |EntrezGene=7079 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11823 | |HGNC=11823 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=152bp_to_uc003bwo.2_5end | |association_with_transcript=152bp_to_uc003bwo.2_5end | ||
|cluster_id=chr3:12200368..12200494,- | |||
|coexpression_cluster_id=C220 | |||
|description=CAGE_peak_1_at_TIMP4_5end | |description=CAGE_peak_1_at_TIMP4_5end | ||
|id=chr3:12200368..12200494,- | |id=chr3:12200368..12200494,- | ||
|ontology_enrichment_celltype=CL:0000136!7.86e-11!15 | |ontology_enrichment_celltype=CL:0000136!7.86e-11!15 | ||
|ontology_enrichment_celltype_v019=CL:0000136;1.63e-11;13 | |||
|ontology_enrichment_celltype_v019_2=CL:0000136,6.17e-12,15 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000481!3.10e-17!347;UBERON:0007023!1.77e-16!115;UBERON:0000468!4.46e-14!659;UBERON:0000922!6.50e-13!612;UBERON:0000475!1.90e-11!365;UBERON:0002050!2.75e-11!605;UBERON:0005423!2.75e-11!605;UBERON:0000923!3.21e-11!604;UBERON:0005291!3.21e-11!604;UBERON:0006598!3.21e-11!604;UBERON:0002532!3.21e-11!604;UBERON:0000062!9.91e-10!511;UBERON:0000467!1.13e-09!625;UBERON:0000477!1.25e-09!286;UBERON:0000480!1.80e-09!626;UBERON:0000119!3.11e-09!312;UBERON:0005743!4.96e-09!86;UBERON:0001017!1.10e-08!82;UBERON:0000483!1.71e-08!309;UBERON:0000033!2.37e-08!123;UBERON:0000153!2.70e-08!129;UBERON:0007811!2.70e-08!129;UBERON:0001013!3.09e-08!14;UBERON:0003075!7.82e-08!86;UBERON:0007284!7.82e-08!86;UBERON:0004121!1.08e-07!169;UBERON:0000073!1.92e-07!94;UBERON:0001016!1.92e-07!94;UBERON:0007100!2.10e-07!27;UBERON:0000924!4.28e-07!173;UBERON:0006601!4.28e-07!173;UBERON:0002616!4.50e-07!59;UBERON:0000064!6.04e-07!219;UBERON:0002346!6.05e-07!90;UBERON:0003103!6.67e-07!69 | |ontology_enrichment_uberon=UBERON:0000481!3.10e-17!347;UBERON:0007023!1.77e-16!115;UBERON:0000468!4.46e-14!659;UBERON:0000922!6.50e-13!612;UBERON:0000475!1.90e-11!365;UBERON:0002050!2.75e-11!605;UBERON:0005423!2.75e-11!605;UBERON:0000923!3.21e-11!604;UBERON:0005291!3.21e-11!604;UBERON:0006598!3.21e-11!604;UBERON:0002532!3.21e-11!604;UBERON:0000062!9.91e-10!511;UBERON:0000467!1.13e-09!625;UBERON:0000477!1.25e-09!286;UBERON:0000480!1.80e-09!626;UBERON:0000119!3.11e-09!312;UBERON:0005743!4.96e-09!86;UBERON:0001017!1.10e-08!82;UBERON:0000483!1.71e-08!309;UBERON:0000033!2.37e-08!123;UBERON:0000153!2.70e-08!129;UBERON:0007811!2.70e-08!129;UBERON:0001013!3.09e-08!14;UBERON:0003075!7.82e-08!86;UBERON:0007284!7.82e-08!86;UBERON:0004121!1.08e-07!169;UBERON:0000073!1.92e-07!94;UBERON:0001016!1.92e-07!94;UBERON:0007100!2.10e-07!27;UBERON:0000924!4.28e-07!173;UBERON:0006601!4.28e-07!173;UBERON:0002616!4.50e-07!59;UBERON:0000064!6.04e-07!219;UBERON:0002346!6.05e-07!90;UBERON:0003103!6.67e-07!69 | ||
|ontology_enrichment_uberon_v019=UBERON:0001013;4.96e-09;14!UBERON:0007100;2.69e-07;25 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,1.70e-16,114;UBERON:0010314,2.70e-10,132;UBERON:0011216,4.50e-09,223;UBERON:0001013,4.92e-09,14;UBERON:0000922,6.59e-08,592;UBERON:0000923,7.61e-08,560;UBERON:0010316,7.61e-08,560;UBERON:0005291,7.61e-08,560;UBERON:0006598,7.61e-08,560;UBERON:0010317,7.61e-08,560;UBERON:0002532,7.61e-08,560;UBERON:0002050,1.73e-07,564;UBERON:0007100,2.09e-07,27;UBERON:0001048,3.15e-07,160;UBERON:0005423,3.32e-07,581;UBERON:0000119,3.40e-07,309;UBERON:0001017,8.28e-07,81 | |||
|phase1_expression=38.515816405358,83.7133048413744,51.3074030909335,39.0285863577209,149.285005538714,19.1914475302081,721.904652779685,67.5940264566709,560.243172488654,2.21160542851358,9.07141518364156,0.873765488520689,1.58260186937072,19.9263828265675,18.8896504164912,0.672325146451775,0,0,0.487932798790507,2.21617904538218,3.26401105990805,0.940364164434263,0.286235987131057,0.136874425072884,1.63205431473244,0,0,0,0.393364276848904,0,0,0,0.90361775633475,1.10926203050036,0,0,0,0.553995408531877,0,0,0.671746422719773,0,0.77272670290256,0.290796477559129,0,0.485168122375632,0.929716147622738,0.822335776043652,0.619412741790207,1.43846196161075,1.2808035326455,1.41889337933151,0,0,0,0.188242339542605,0.545812300115692,0.674170453335254,0,0.641858054152187,1.27867425159808,0.329851300186716,0.598390972864896,2.13112375266347,0.290209238628584,0,0.622822248995575,0.75374599577023,1.0429658368404,0.868755378820466,0,0,0.632924774881769,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.263384084775077,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.127986611154418,0,0,0,0,0,0,9.75227465255847,14.0847180537764,4.85877735005415,5.06014813338393,7.01873074890245,7.09747942908036,0.795285947051099,18.0054902011975,1.22895262313288,1.10864698731282,1.05401742831751,1.57174890597255,1.45718115317017,0,0,0.174129737299267,0,0,0,0,0.39752481473341,1.72046919021225,0,0,0,0,0,0.258416759169329,0.35576626268671,0,0,0,1.70843440283719,0,0,0.0892997282840798,0.22452937262617,0.337834441449967,0,0,0.183201743930407,0,0,1.74437620857014,0.496971951695318,0.633152558322899,0,2.0078563452417,2.12801029319014,2.24271040056923,2.1349799145941,0.24666754841716,16.4941848761876,5.52313755485721,1.9615428373615,41.6232926023561,27.6564443750399,12.8876787508588,7.80400192075801,11.409436430889,8.66802347200446,3.05329696473789,6.151171885989,2.52811452064047,13.2700211315681,3.93069815397658,24.0749070139534,3.56400857184616,3.21447008062124,10.9219363432563,10.7792721272436,3.53505839303539,6.00568895385428,3.3247693858102,0,0.919463387397059,3.60571341375832,1.58805056424029,0,0.213557388818567,0,0,0.206105058476878,1.03056216018252,1.48893485065272,2.02531598689519,0.584622030967192,0.252433774244115,0.184099797284599,0.484938170456436,0,0.302256294682921,0.508681776931463,0,0,0.860413786167011,4.14710600840624,1.59035721985782,4.18298194330266,5.70135802584537,6.30802127189071,1.45990943630332,0,2.57296375277154,2.76269842704961,11.6091982007995,21.6563844500876,1.65629520055781,1.34867752062481,1.44606617930089,1.65440959098591,2.17879444092406,1.66089433377768,2.56179485504312,2.5508790466295,3.07797725557112,0.738155454624648,0,3.2925920906512,5.88034845542168,0,0,0.590789906681404,0,1.35287282397425,2.74508496477641,0,1.1240175325762,0.201057944823262,0,4.88712457965487,28.0782392025486,4.3299402607582,1.73895607462615,1.87853910777315,0.288732895522148,0,0.190254152234598,1.58040879591855,0,0,0,0,0,0.16798212819886,0.141775097242386,0,0,1.15014803749563,0,0,0,0,0,0.190493682876507,0,0,63.2968050284009,0.205654985406647,0,0,28.3691643393763,5.66748089483264,16.3544377380719,0.129271715757778,253.936076554837,5.917119267892,1.06375246633948,1.04007436911366,12.0887465903207,4.25547396069835,5.59486575933809,8.57867961948885,52.63429572297,13.9950857252731,8.79487697593085,10.3063665135338,3.16780749173372,3.91871190177462,1.74306691720059,1.79951384127703,0,0,0,0.239624855491583,1.14861935834114,0,1.01346914667305,3.49309748335652,1.96967059563885,0,0,0,0,7.6228387266739,2.60279707715243,2.31986643833309,1.50764638800914,0,0,0,0,28.5871175705596,35.5121069952371,15.4621063508849,0,0,0,0.117141414992713,9.02838299183157,13.6444502433591,26.9029985360513,0,1.47495334833363,3.73599542212756,18.9927122738858,17.1571711905428,0,0,0,0.606255142892519,1.66435439510497,4.5358543999452,1.73675465473144,0.767309866440312,1.68396056659844,3.33161788064823,0.511707249066704,1.28683136914886,11.8734453155993,2.46735510084249,5.68197521002007,5.00975651684236,6.23105315020345,4.06736324609857,0.966875596732978,1.40354529212299,1.93370076765382,3.55924789310281,2.54927635209404,4.06485686374215,1.35359883872224,0.770153371044148,1.56869953835371,7.30696123266303,0.422206515571503,0,0.510281115829547,1.0795795805107,0,2.70946437543853,3.01013864312912,1.01950509218015,2.49322802678617,1.11937377361089,0,0,1.02580050046556,0.984043937099117,3.25378394664303,3.40035338437484,0.0915694648183434,0.082509499920588,0.574265537996172,0,1.6068392984416,3.57681657680851,21.5668063960502,19.3414630154923,5.09995318192763,19.228223831421,27.5531718437034,12.9544473672473,2.67096106940212,3.30569830721956,3.45942121257191,0.127612712494584,2.52894452138875,1.39453664789186,2.83331112147576,0.6970372701606,0,0.532306030317022,0,0,0.143124886741991,25.678927485817,4.74569137078089,6.48142659341004,5.62975140884935,13.6940476170855,2.86382923133343,0.78494864019923,4.49681143958287,3.29444435683266,2.12062324222236,0.404364963146632,0,0.42125845623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|phase1_expression=38.515816405358,83.7133048413744,51.3074030909335,39.0285863577209,149.285005538714,19.1914475302081,721.904652779685,67.5940264566709,560.243172488654,2.21160542851358,9.07141518364156,0.873765488520689,1.58260186937072,19.9263828265675,18.8896504164912,0.672325146451775,0,0,0.487932798790507,2.21617904538218,3.26401105990805,0.940364164434263,0.286235987131057,0.136874425072884,1.63205431473244,0,0,0,0.393364276848904,0,0,0,0.90361775633475,1.10926203050036,0,0,0,0.553995408531877,0,0,0.671746422719773,0,0.77272670290256,0.290796477559129,0,0.485168122375632,0.929716147622738,0.822335776043652,0.619412741790207,1.43846196161075,1.2808035326455,1.41889337933151,0,0,0,0.188242339542605,0.545812300115692,0.674170453335254,0,0.641858054152187,1.27867425159808,0.329851300186716,0.598390972864896,2.13112375266347,0.290209238628584,0,0.622822248995575,0.75374599577023,1.0429658368404,0.868755378820466,0,0,0.632924774881769,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.263384084775077,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.127986611154418,0,0,0,0,0,0,9.75227465255847,14.0847180537764,4.85877735005415,5.06014813338393,7.01873074890245,7.09747942908036,0.795285947051099,18.0054902011975,1.22895262313288,1.10864698731282,1.05401742831751,1.57174890597255,1.45718115317017,0,0,0.174129737299267,0,0,0,0,0.39752481473341,1.72046919021225,0,0,0,0,0,0.258416759169329,0.35576626268671,0,0,0,1.70843440283719,0,0,0.0892997282840798,0.22452937262617,0.337834441449967,0,0,0.183201743930407,0,0,1.74437620857014,0.496971951695318,0.633152558322899,0,2.0078563452417,2.12801029319014,2.24271040056923,2.1349799145941,0.24666754841716,16.4941848761876,5.52313755485721,1.9615428373615,41.6232926023561,27.6564443750399,12.8876787508588,7.80400192075801,11.409436430889,8.66802347200446,3.05329696473789,6.151171885989,2.52811452064047,13.2700211315681,3.93069815397658,24.0749070139534,3.56400857184616,3.21447008062124,10.9219363432563,10.7792721272436,3.53505839303539,6.00568895385428,3.3247693858102,0,0.919463387397059,3.60571341375832,1.58805056424029,0,0.213557388818567,0,0,0.206105058476878,1.03056216018252,1.48893485065272,2.02531598689519,0.584622030967192,0.252433774244115,0.184099797284599,0.484938170456436,0,0.302256294682921,0.508681776931463,0,0,0.860413786167011,4.14710600840624,1.59035721985782,4.18298194330266,5.70135802584537,6.30802127189071,1.45990943630332,0,2.57296375277154,2.76269842704961,11.6091982007995,21.6563844500876,1.65629520055781,1.34867752062481,1.44606617930089,1.65440959098591,2.17879444092406,1.66089433377768,2.56179485504312,2.5508790466295,3.07797725557112,0.738155454624648,0,3.2925920906512,5.88034845542168,0,0,0.590789906681404,0,1.35287282397425,2.74508496477641,0,1.1240175325762,0.201057944823262,0,4.88712457965487,28.0782392025486,4.3299402607582,1.73895607462615,1.87853910777315,0.288732895522148,0,0.190254152234598,1.58040879591855,0,0,0,0,0,0.16798212819886,0.141775097242386,0,0,1.15014803749563,0,0,0,0,0,0.190493682876507,0,0,63.2968050284009,0.205654985406647,0,0,28.3691643393763,5.66748089483264,16.3544377380719,0.129271715757778,253.936076554837,5.917119267892,1.06375246633948,1.04007436911366,12.0887465903207,4.25547396069835,5.59486575933809,8.57867961948885,52.63429572297,13.9950857252731,8.79487697593085,10.3063665135338,3.16780749173372,3.91871190177462,1.74306691720059,1.79951384127703,0,0,0,0.239624855491583,1.14861935834114,0,1.01346914667305,3.49309748335652,1.96967059563885,0,0,0,0,7.6228387266739,2.60279707715243,2.31986643833309,1.50764638800914,0,0,0,0,28.5871175705596,35.5121069952371,15.4621063508849,0,0,0,0.117141414992713,9.02838299183157,13.6444502433591,26.9029985360513,0,1.47495334833363,3.73599542212756,18.9927122738858,17.1571711905428,0,0,0,0.606255142892519,1.66435439510497,4.5358543999452,1.73675465473144,0.767309866440312,1.68396056659844,3.33161788064823,0.511707249066704,1.28683136914886,11.8734453155993,2.46735510084249,5.68197521002007,5.00975651684236,6.23105315020345,4.06736324609857,0.966875596732978,1.40354529212299,1.93370076765382,3.55924789310281,2.54927635209404,4.06485686374215,1.35359883872224,0.770153371044148,1.56869953835371,7.30696123266303,0.422206515571503,0,0.510281115829547,1.0795795805107,0,2.70946437543853,3.01013864312912,1.01950509218015,2.49322802678617,1.11937377361089,0,0,1.02580050046556,0.984043937099117,3.25378394664303,3.40035338437484,0.0915694648183434,0.082509499920588,0.574265537996172,0,1.6068392984416,3.57681657680851,21.5668063960502,19.3414630154923,5.09995318192763,19.228223831421,27.5531718437034,12.9544473672473,2.67096106940212,3.30569830721956,3.45942121257191,0.127612712494584,2.52894452138875,1.39453664789186,2.83331112147576,0.6970372701606,0,0.532306030317022,0,0,0.143124886741991,25.678927485817,4.74569137078089,6.48142659341004,5.62975140884935,13.6940476170855,2.86382923133343,0.78494864019923,4.49681143958287,3.29444435683266,2.12062324222236,0.404364963146632,0,0.42125845623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| ||
|short_description=p1@TIMP4 | |short_description=p1@TIMP4 | ||
}} | }} |
Latest revision as of 23:30, 19 September 2015
Short description: | p1@TIMP4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_TIMP4_5end |
Coexpression cluster: | C220_Adipocyte_mature_left_breast_skin_liver_adipose |
Association with transcript: | 152bp_to_uc003bwo.2_5end |
EntrezGene: | TIMP4 |
HGNC: | 11823 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fat cell | 6.17e-12 | 15 |
Ontology term | p-value | n |
---|---|---|
adult organism | 1.70e-16 | 114 |
structure with developmental contribution from neural crest | 2.70e-10 | 132 |
organ system subdivision | 4.50e-09 | 223 |
adipose tissue | 4.92e-09 | 14 |
embryo | 6.59e-08 | 592 |
germ layer | 7.61e-08 | 560 |
germ layer / neural crest | 7.61e-08 | 560 |
embryonic tissue | 7.61e-08 | 560 |
presumptive structure | 7.61e-08 | 560 |
germ layer / neural crest derived structure | 7.61e-08 | 560 |
epiblast (generic) | 7.61e-08 | 560 |
embryonic structure | 1.73e-07 | 564 |
primary circulatory organ | 2.09e-07 | 27 |
primordium | 3.15e-07 | 160 |
developing anatomical structure | 3.32e-07 | 581 |
cell layer | 3.40e-07 | 309 |
central nervous system | 8.28e-07 | 81 |