FFCP PHASE1:Hg19::chr17:38474489..38474548,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=5914 | |EntrezGene=5914 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9864 | |HGNC=9864 | ||
|TSSclassifier=strong | |||
|UniProt=P10276 | |UniProt=P10276 | ||
|association_with_transcript=0bp_to_ENST00000394089,uc002hul.3,uc010wfe.1_5end | |association_with_transcript=0bp_to_ENST00000394089,uc002hul.3,uc010wfe.1_5end | ||
|cluster_id=chr17:38474489..38474548,+ | |||
|coexpression_cluster_id=C2404 | |||
|description=CAGE_peak_1_at_RARA_5end | |description=CAGE_peak_1_at_RARA_5end | ||
|id=chr17:38474489..38474548,+ | |id=chr17:38474489..38474548,+ | ||
|ontology_enrichment_celltype=CL:0000738!4.25e-31!140;CL:0000766!5.52e-31!76;CL:0000988!2.16e-30!182;CL:0000037!2.89e-29!172;CL:0000566!2.89e-29!172;CL:0002032!3.82e-28!165;CL:0000837!3.82e-28!165;CL:0000557!1.05e-27!71;CL:0002057!2.79e-27!42;CL:0002031!6.65e-27!124;CL:0002087!9.79e-26!119;CL:0000763!1.35e-24!112;CL:0000049!1.35e-24!112;CL:0000860!2.60e-24!45;CL:0002009!3.11e-24!65;CL:0000839!1.20e-23!70;CL:0002194!4.18e-23!63;CL:0000576!4.18e-23!63;CL:0000040!4.18e-23!63;CL:0000559!4.18e-23!63;CL:0002320!3.79e-21!365;CL:0000134!6.73e-19!358;CL:0000219!1.40e-18!390;CL:0000048!9.86e-13!430;CL:0000723!3.06e-12!436;CL:0000034!1.94e-11!444;CL:0002371!1.22e-10!591;CL:0000144!2.65e-08!625 | |ontology_enrichment_celltype=CL:0000738!4.25e-31!140;CL:0000766!5.52e-31!76;CL:0000988!2.16e-30!182;CL:0000037!2.89e-29!172;CL:0000566!2.89e-29!172;CL:0002032!3.82e-28!165;CL:0000837!3.82e-28!165;CL:0000557!1.05e-27!71;CL:0002057!2.79e-27!42;CL:0002031!6.65e-27!124;CL:0002087!9.79e-26!119;CL:0000763!1.35e-24!112;CL:0000049!1.35e-24!112;CL:0000860!2.60e-24!45;CL:0002009!3.11e-24!65;CL:0000839!1.20e-23!70;CL:0002194!4.18e-23!63;CL:0000576!4.18e-23!63;CL:0000040!4.18e-23!63;CL:0000559!4.18e-23!63;CL:0002320!3.79e-21!365;CL:0000134!6.73e-19!358;CL:0000219!1.40e-18!390;CL:0000048!9.86e-13!430;CL:0000723!3.06e-12!436;CL:0000034!1.94e-11!444;CL:0002371!1.22e-10!591;CL:0000144!2.65e-08!625 | ||
|ontology_enrichment_celltype_v019=CL:0000860;2.15e-20;33!CL:0002057;2.15e-20;33!CL:0000576;7.18e-17;48!CL:0000473;6.59e-16;39!CL:0000234;6.59e-16;39!CL:0000766;2.83e-15;69!CL:0002087;2.04e-09;104!CL:0000763;3.71e-09;100!CL:0000738;4.17e-08;136 | |||
|ontology_enrichment_celltype_v019_2=CL:0000766,1.79e-34,72;CL:0000738,2.52e-33,136;CL:0000988,2.55e-32,177;CL:0000037,4.03e-31,168;CL:0000557,4.35e-31,67;CL:0002032,5.30e-30,161;CL:0000837,5.30e-30,161;CL:0002031,4.26e-29,120;CL:0002087,6.32e-28,115;CL:0002009,1.64e-27,61;CL:0000860,2.79e-27,42;CL:0002057,2.79e-27,42;CL:0000763,8.24e-27,108;CL:0000049,8.24e-27,108;CL:0000839,1.09e-26,66;CL:0002194,2.40e-26,59;CL:0000576,2.40e-26,59;CL:0000040,2.40e-26,59;CL:0000559,2.40e-26,59;CL:0000473,1.41e-25,48;CL:0000234,1.41e-25,48;CL:0002320,9.40e-22,361;CL:0000134,1.80e-19,354;CL:0000219,4.09e-19,386;CL:0000048,2.00e-13,427;CL:0000723,6.47e-13,433;CL:0000034,4.37e-12,441 | |||
|ontology_enrichment_development_v019=CL:0002057;8.13e-20;42!CL:0000049;5.77e-08;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!9.12e-34!102;UBERON:0003061!9.12e-34!102;UBERON:0002193!2.02e-32!112;UBERON:0002371!1.19e-28!80;UBERON:0001474!1.51e-26!86;UBERON:0002405!6.66e-25!115;UBERON:0004765!4.18e-23!101;UBERON:0001434!4.18e-23!101;UBERON:0002384!2.33e-21!375;UBERON:0003081!9.92e-16!216;UBERON:0002204!3.22e-13!167 | |ontology_enrichment_uberon=UBERON:0002390!9.12e-34!102;UBERON:0003061!9.12e-34!102;UBERON:0002193!2.02e-32!112;UBERON:0002371!1.19e-28!80;UBERON:0001474!1.51e-26!86;UBERON:0002405!6.66e-25!115;UBERON:0004765!4.18e-23!101;UBERON:0001434!4.18e-23!101;UBERON:0002384!2.33e-21!375;UBERON:0003081!9.92e-16!216;UBERON:0002204!3.22e-13!167 | ||
|ontology_enrichment_uberon_v019=UBERON:0002390;4.55e-07;32 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,9.80e-37,98;UBERON:0003061,9.80e-37,98;UBERON:0002193,4.13e-35,108;UBERON:0002371,8.17e-32,76;UBERON:0002405,3.99e-30,93;UBERON:0001474,2.21e-29,82;UBERON:0004765,5.54e-28,90;UBERON:0001434,1.58e-26,100;UBERON:0002384,5.88e-22,371;UBERON:0003081,9.81e-18,203;UBERON:0002204,1.51e-15,167;UBERON:0000926,2.02e-09,315;UBERON:0004120,2.02e-09,315;UBERON:0006603,2.02e-09,315 | |||
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| ||
|short_description=p1@RARA | |short_description=p1@RARA | ||
}} | }} |
Latest revision as of 00:41, 20 September 2015
Short description: | p1@RARA |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_RARA_5end |
Coexpression cluster: | C2404_CD14_Mast_Eosinophils_Neutrophils_Mesenchymal_Basophils_CD19 |
Association with transcript: | 0bp_to_ENST00000394089, uc002hul.3, uc010wfe.1_5end |
EntrezGene: | RARA |
HGNC: | 9864 |
UniProt: | P10276 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
myeloid leukocyte | 1.79e-34 | 72 |
leukocyte | 2.52e-33 | 136 |
hematopoietic cell | 2.55e-32 | 177 |
hematopoietic stem cell | 4.03e-31 | 168 |
granulocyte monocyte progenitor cell | 4.35e-31 | 67 |
hematopoietic oligopotent progenitor cell | 5.30e-30 | 161 |
hematopoietic multipotent progenitor cell | 5.30e-30 | 161 |
hematopoietic lineage restricted progenitor cell | 4.26e-29 | 120 |
nongranular leukocyte | 6.32e-28 | 115 |
macrophage dendritic cell progenitor | 1.64e-27 | 61 |
classical monocyte | 2.79e-27 | 42 |
CD14-positive, CD16-negative classical monocyte | 2.79e-27 | 42 |
myeloid cell | 8.24e-27 | 108 |
common myeloid progenitor | 8.24e-27 | 108 |
myeloid lineage restricted progenitor cell | 1.09e-26 | 66 |
monopoietic cell | 2.40e-26 | 59 |
monocyte | 2.40e-26 | 59 |
monoblast | 2.40e-26 | 59 |
promonocyte | 2.40e-26 | 59 |
defensive cell | 1.41e-25 | 48 |
phagocyte | 1.41e-25 | 48 |
connective tissue cell | 9.40e-22 | 361 |
mesenchymal cell | 1.80e-19 | 354 |
motile cell | 4.09e-19 | 386 |
multi fate stem cell | 2.00e-13 | 427 |
somatic stem cell | 6.47e-13 | 433 |
stem cell | 4.37e-12 | 441 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 9.80e-37 | 98 |
blood island | 9.80e-37 | 98 |
hemolymphoid system | 4.13e-35 | 108 |
bone marrow | 8.17e-32 | 76 |
immune system | 3.99e-30 | 93 |
bone element | 2.21e-29 | 82 |
skeletal element | 5.54e-28 | 90 |
skeletal system | 1.58e-26 | 100 |
connective tissue | 5.88e-22 | 371 |
lateral plate mesoderm | 9.81e-18 | 203 |
musculoskeletal system | 1.51e-15 | 167 |
mesoderm | 2.02e-09 | 315 |
mesoderm-derived structure | 2.02e-09 | 315 |
presumptive mesoderm | 2.02e-09 | 315 |