FFCP PHASE1:Hg19::chr14:50360215..50360247,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr14:50360215..50360247,+ to FFCP PHASE1:Hg19::chr14:50360215..50360247,+: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=382 | |EntrezGene=382 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=659 | |HGNC=659 | ||
|TSSclassifier=strong | |||
|UniProt=P62330 | |UniProt=P62330 | ||
|association_with_transcript=-140bp_to_AF047432_5end | |||
|cluster_id=chr14:50360215..50360247,+ | |||
|description=CAGE_peak_4_at_ARF6_5end | |||
|id=chr14:50360215..50360247,+ | |||
|ontology_enrichment_celltype=CL:0002057!4.53e-22!42;CL:0000860!3.19e-20!45;CL:0000839!2.16e-16!70;CL:0000557!4.81e-16!71;CL:0002009!8.45e-16!65;CL:0002371!1.06e-15!591;CL:0002194!1.60e-15!63;CL:0000576!1.60e-15!63;CL:0000040!1.60e-15!63;CL:0000559!1.60e-15!63;CL:0000766!3.44e-15!76;CL:0002031!3.73e-15!124;CL:0000738!2.76e-14!140;CL:0002087!7.64e-14!119;CL:0000723!8.50e-14!436;CL:0000048!1.23e-13!430;CL:0000003!1.39e-13!722;CL:0000063!7.86e-13!578;CL:0000034!4.06e-12!444;CL:0000134!9.64e-12!358;CL:0000548!2.27e-11!679;CL:0000004!2.27e-11!679;CL:0000255!2.27e-11!679;CL:0000144!3.27e-11!625;CL:0000012!3.30e-11!682;CL:0002320!5.23e-11!365 | |||
|ontology_enrichment_celltype_v019=CL:0000860;2.75e-18;33!CL:0002057;2.75e-18;33!CL:0000576;9.63e-14;48!CL:0000473;1.76e-13;39!CL:0000234;1.76e-13;39!CL:0000766;9.49e-09;69 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,2.72e-23,42;CL:0002057,2.72e-23,42;CL:0000473,6.39e-21,48;CL:0000234,6.39e-21,48;CL:0000839,2.15e-17,66;CL:0000557,5.25e-17,67;CL:0002009,8.60e-17,61;CL:0002194,1.66e-16,59;CL:0000576,1.66e-16,59;CL:0000040,1.66e-16,59;CL:0000559,1.66e-16,59;CL:0000766,1.90e-16,72;CL:0002031,2.84e-15,120;CL:0000738,8.40e-15,136;CL:0002087,5.64e-14,115;CL:0000723,1.56e-13,433;CL:0000048,3.34e-13,427;CL:0000134,1.82e-12,354;CL:0000034,3.04e-12,441;CL:0002320,1.24e-11,361;CL:0002032,2.82e-07,161;CL:0000837,2.82e-07,161;CL:0000219,4.15e-07,386;CL:0000037,5.16e-07,168;CL:0000763,9.89e-07,108;CL:0000049,9.89e-07,108 | |||
|ontology_enrichment_development_v019=CL:0002057;3.23e-17;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002371!1.94e-17!80;UBERON:0003081!3.92e-17!216;UBERON:0002390!1.33e-15!102;UBERON:0003061!1.33e-15!102;UBERON:0001474!4.39e-15!86;UBERON:0002193!5.85e-15!112;UBERON:0002204!7.04e-15!167;UBERON:0004765!4.52e-14!101;UBERON:0001434!4.52e-14!101;UBERON:0002384!1.45e-10!375;UBERON:0000926!1.35e-09!448;UBERON:0004120!1.35e-09!448;UBERON:0006603!1.35e-09!448;UBERON:0002405!1.79e-09!115 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,1.67e-18,76;UBERON:0002390,4.51e-16,98;UBERON:0003061,4.51e-16,98;UBERON:0001474,6.19e-16,82;UBERON:0003081,9.56e-16,203;UBERON:0002193,4.53e-15,108;UBERON:0002405,1.16e-14,93;UBERON:0002204,1.36e-13,167;UBERON:0001434,1.91e-13,100;UBERON:0004765,2.01e-13,90;UBERON:0002384,7.55e-11,371;UBERON:0000926,2.45e-10,315;UBERON:0004120,2.45e-10,315;UBERON:0006603,2.45e-10,315 | |||
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| ||
|short_description=p4@ARF6 | |||
}} | }} |
Latest revision as of 02:41, 20 September 2015
Short description: | p4@ARF6 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_ARF6_5end |
Coexpression cluster: | NA |
Association with transcript: | -140bp_to_AF047432_5end |
EntrezGene: | ARF6 |
HGNC: | 659 |
UniProt: | P62330 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 2.72e-23 | 42 |
CD14-positive, CD16-negative classical monocyte | 2.72e-23 | 42 |
defensive cell | 6.39e-21 | 48 |
phagocyte | 6.39e-21 | 48 |
myeloid lineage restricted progenitor cell | 2.15e-17 | 66 |
granulocyte monocyte progenitor cell | 5.25e-17 | 67 |
macrophage dendritic cell progenitor | 8.60e-17 | 61 |
monopoietic cell | 1.66e-16 | 59 |
monocyte | 1.66e-16 | 59 |
monoblast | 1.66e-16 | 59 |
promonocyte | 1.66e-16 | 59 |
myeloid leukocyte | 1.90e-16 | 72 |
hematopoietic lineage restricted progenitor cell | 2.84e-15 | 120 |
leukocyte | 8.40e-15 | 136 |
nongranular leukocyte | 5.64e-14 | 115 |
somatic stem cell | 1.56e-13 | 433 |
multi fate stem cell | 3.34e-13 | 427 |
mesenchymal cell | 1.82e-12 | 354 |
stem cell | 3.04e-12 | 441 |
connective tissue cell | 1.24e-11 | 361 |
hematopoietic oligopotent progenitor cell | 2.82e-07 | 161 |
hematopoietic multipotent progenitor cell | 2.82e-07 | 161 |
motile cell | 4.15e-07 | 386 |
hematopoietic stem cell | 5.16e-07 | 168 |
myeloid cell | 9.89e-07 | 108 |
common myeloid progenitor | 9.89e-07 | 108 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 1.67e-18 | 76 |
hematopoietic system | 4.51e-16 | 98 |
blood island | 4.51e-16 | 98 |
bone element | 6.19e-16 | 82 |
lateral plate mesoderm | 9.56e-16 | 203 |
hemolymphoid system | 4.53e-15 | 108 |
immune system | 1.16e-14 | 93 |
musculoskeletal system | 1.36e-13 | 167 |
skeletal system | 1.91e-13 | 100 |
skeletal element | 2.01e-13 | 90 |
connective tissue | 7.55e-11 | 371 |
mesoderm | 2.45e-10 | 315 |
mesoderm-derived structure | 2.45e-10 | 315 |
presumptive mesoderm | 2.45e-10 | 315 |