FFCP PHASE1:Hg19::chr9:115653119..115653132,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(9 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=57864 | |EntrezGene=57864 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=16055 | |HGNC=16055 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-29bp_to_ENST00000491462_5end | |association_with_transcript=-29bp_to_ENST00000491462_5end | ||
|cluster_id=chr9:115653119..115653132,- | |||
|coexpression_cluster_id=C4790 | |||
|description=CAGE_peak_3_at_SLC46A2_5end | |description=CAGE_peak_3_at_SLC46A2_5end | ||
|id=chr9:115653119..115653132,- | |id=chr9:115653119..115653132,- | ||
|ontology_enrichment_celltype=CL:0002057!5.36e-43!42;CL:0002194!8.73e-40!63;CL:0000576!8.73e-40!63;CL:0000040!8.73e-40!63;CL:0000559!8.73e-40!63;CL:0000860!1.72e-39!45;CL:0002009!3.12e-38!65;CL:0000766!3.42e-35!76;CL:0000839!9.79e-35!70;CL:0000557!4.27e-34!71;CL:0002087!5.40e-28!119;CL:0000738!1.97e-24!140;CL:0002031!5.76e-22!124;CL:0002393!1.42e-21!9;CL:0002397!1.42e-21!9;CL:0000763!1.65e-21!112;CL:0000049!1.65e-21!112;CL:0000037!2.24e-18!172;CL:0000566!2.24e-18!172;CL:0000988!1.21e-16!182;CL:0002032!2.21e-16!165;CL:0000837!2.21e-16!165;CL:0000875!1.73e-08!3;CL:0002396!1.73e-08!3;CL:0000842!4.53e-08!3 | |ontology_enrichment_celltype=CL:0002057!5.36e-43!42;CL:0002194!8.73e-40!63;CL:0000576!8.73e-40!63;CL:0000040!8.73e-40!63;CL:0000559!8.73e-40!63;CL:0000860!1.72e-39!45;CL:0002009!3.12e-38!65;CL:0000766!3.42e-35!76;CL:0000839!9.79e-35!70;CL:0000557!4.27e-34!71;CL:0002087!5.40e-28!119;CL:0000738!1.97e-24!140;CL:0002031!5.76e-22!124;CL:0002393!1.42e-21!9;CL:0002397!1.42e-21!9;CL:0000763!1.65e-21!112;CL:0000049!1.65e-21!112;CL:0000037!2.24e-18!172;CL:0000566!2.24e-18!172;CL:0000988!1.21e-16!182;CL:0002032!2.21e-16!165;CL:0000837!2.21e-16!165;CL:0000875!1.73e-08!3;CL:0002396!1.73e-08!3;CL:0000842!4.53e-08!3 | ||
|ontology_enrichment_celltype_v019=CL:0002393;1.01e-39;6!CL:0002397;1.01e-39;6!CL:0000576;1.13e-23;48!CL:0000875;1.95e-21;3!CL:0002396;1.95e-21;3!CL:0000226;4.06e-20;3!CL:0000842;4.06e-20;3!CL:0000766;8.15e-16;69!CL:0000860;1.44e-11;33!CL:0002057;1.44e-11;33!CL:0000473;1.59e-08;39!CL:0000234;1.59e-08;39!CL:0002087;3.53e-07;104 | |||
|ontology_enrichment_celltype_v019_2=CL:0002393,1.52e-59,9;CL:0002397,1.52e-59,9;CL:0000860,3.46e-43,42;CL:0002057,3.46e-43,42;CL:0000473,2.27e-37,48;CL:0000234,2.27e-37,48;CL:0002194,3.19e-29,59;CL:0000576,3.19e-29,59;CL:0000040,3.19e-29,59;CL:0000559,3.19e-29,59;CL:0002009,3.60e-28,61;CL:0000766,2.36e-26,72;CL:0000839,8.15e-26,66;CL:0000557,2.19e-25,67;CL:0000875,1.59e-21,3;CL:0002396,1.59e-21,3;CL:0000226,2.56e-20,3;CL:0000842,2.56e-20,3;CL:0002087,2.68e-19,115;CL:0000738,1.57e-17,136;CL:0000763,1.83e-16,108;CL:0000049,1.83e-16,108;CL:0000037,1.98e-13,168;CL:0002031,8.90e-13,120;CL:0000988,1.53e-12,177;CL:0002032,6.64e-10,161;CL:0000837,6.64e-10,161 | |||
|ontology_enrichment_development_v019=CL:0002057;6.98e-32;42 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!2.56e-45!102;UBERON:0003061!2.56e-45!102;UBERON:0002193!1.37e-43!112;UBERON:0002371!4.69e-29!80;UBERON:0001474!2.77e-26!86;UBERON:0002405!1.45e-24!115;UBERON:0004765!8.18e-21!101;UBERON:0001434!8.18e-21!101;UBERON:0003081!1.87e-17!216;UBERON:0000178!3.72e-14!15;UBERON:0000179!3.72e-14!15;UBERON:0000463!3.72e-14!15;UBERON:0002204!4.56e-10!167;UBERON:0007023!5.51e-10!115;UBERON:0006947!7.86e-08!3;UBERON:0004054!7.86e-08!3;UBERON:0000926!2.79e-07!448;UBERON:0004120!2.79e-07!448;UBERON:0006603!2.79e-07!448 | |ontology_enrichment_uberon=UBERON:0002390!2.56e-45!102;UBERON:0003061!2.56e-45!102;UBERON:0002193!1.37e-43!112;UBERON:0002371!4.69e-29!80;UBERON:0001474!2.77e-26!86;UBERON:0002405!1.45e-24!115;UBERON:0004765!8.18e-21!101;UBERON:0001434!8.18e-21!101;UBERON:0003081!1.87e-17!216;UBERON:0000178!3.72e-14!15;UBERON:0000179!3.72e-14!15;UBERON:0000463!3.72e-14!15;UBERON:0002204!4.56e-10!167;UBERON:0007023!5.51e-10!115;UBERON:0006947!7.86e-08!3;UBERON:0004054!7.86e-08!3;UBERON:0000926!2.79e-07!448;UBERON:0004120!2.79e-07!448;UBERON:0006603!2.79e-07!448 | ||
|ontology_enrichment_uberon_v019=UBERON:0000178;7.47e-27;15!UBERON:0000179;7.47e-27;15!UBERON:0000463;7.47e-27;15!UBERON:0002390;5.45e-12;32!UBERON:0001000;2.70e-08;1!UBERON:0002171;2.70e-08;1!UBERON:0006518;2.70e-08;1!UBERON:0008949;2.70e-08;1!UBERON:0000101;2.70e-08;1!UBERON:0005352;2.70e-08;1!UBERON:0002167;2.70e-08;1!UBERON:0002193;6.11e-07;42 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,7.18e-38,98;UBERON:0003061,7.18e-38,98;UBERON:0002193,5.57e-34,108;UBERON:0000178,4.28e-27,15;UBERON:0000179,4.28e-27,15;UBERON:0000463,4.28e-27,15;UBERON:0002371,5.07e-22,76;UBERON:0001474,3.49e-20,82;UBERON:0004765,4.13e-18,90;UBERON:0002405,2.01e-17,93;UBERON:0003081,5.30e-16,203;UBERON:0001434,5.57e-16,100;UBERON:0000926,1.17e-09,315;UBERON:0004120,1.17e-09,315;UBERON:0006603,1.17e-09,315;UBERON:0002171,2.90e-08,1;UBERON:0006518,2.90e-08,1;UBERON:0008949,2.90e-08,1;UBERON:0000101,2.90e-08,1;UBERON:0002167,2.90e-08,1;UBERON:0002204,2.92e-08,167;UBERON:0001000,3.11e-08,1;UBERON:0005352,3.11e-08,1 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.393364276848904,0,1.08371286321253,0,0,0,0,0,0,2.21598163412751,1.20326668482085,1.08505435357926,0,0.32389366601898,0.257575567634187,5.81592955118259,1.51150377475524,2.42584061187816,1.16214518452842,0.411167888021826,0.619412741790207,0.575384784644301,0,0,0.689491361473237,0.645484683583826,0,1.50593871634084,0,0.449446968890169,0,0,0,0.659702600373432,0.997318288108159,0,0.580418477257168,0,0,0.75374599577023,0.521482918420201,0,0,0.368277635987565,0.316462387440884,1.90129757680748,3.82687739937078,4.40283155567589,4.04383072127382,4.05477610672067,3.05378614724452,3.42015292489498,3.38158351238453,3.47061892152804,0,0.546138611262131,0,0.853460445133014,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.318565414324097,0,0,0.301150238155546,0.383959833463255,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.130979075497713,0,0,0.649094787309367,0.870648686496336,0.930705723632056,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.462985512576611,0,0,0,0,0.234004265139238,0.445893486866185,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.128343036279748,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.6541442089831,1.2942852049117,1.81436848265855,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206082023295445,0,0,0,0.650060246036521,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30982349809975,0,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,2.02979043692868,0,0,1.42939065274673,0.411362273086194,1.94541993357815,0.540031437238115,1.58625035258854,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0986434056369336,2.3948309234694,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.533034776018635,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.15667522279512,0,0,0.379119477770928,0,0,0,0,0,0,0,0,0,0,0,0.698906672968121,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0607495566580247,0,0,0,0,0,0,0,0,0,0,0,0,0,0.082092520749339,0,0,0,0,0,0,0,0,1.06787412567695,0,3.31391244277756,0,0,0,0,0.544017803369474,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0691572524642179,0,0,0,0,0,0,0,0,0,0.0752103283492573,0,0,0,0,0,0,0,0,0.0634158101939068,0,0,0,0,0,0,0,0,0.227662191351298,0,0,0,0,0.131545547125698,0,0,0.235479278551542,0,0,0,0,0,0.0714765441766563,0,0,0,0,0,0,1.38251932362818,0,0,0,0.846774100381858,0.22910686854405,0,0,0,0,0,0,0,0,0.971421986118279,0,0,0,0,0,0,0.0771741581079447,0,0,0,0,0,0,0,0,0.281951753939561,0.0644578879735772,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.303114792872958,0.267964130156178,0,0,0,0,0.775066918032073,0.806971285846153,0,0.0636471582781649,0,0,0,0.0673520530145875,0.0717222053926763,0,0,0,0,0,0,0.122241444182866,0.406896178315738,0,0.402547587182052,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.393364276848904,0,1.08371286321253,0,0,0,0,0,0,2.21598163412751,1.20326668482085,1.08505435357926,0,0.32389366601898,0.257575567634187,5.81592955118259,1.51150377475524,2.42584061187816,1.16214518452842,0.411167888021826,0.619412741790207,0.575384784644301,0,0,0.689491361473237,0.645484683583826,0,1.50593871634084,0,0.449446968890169,0,0,0,0.659702600373432,0.997318288108159,0,0.580418477257168,0,0,0.75374599577023,0.521482918420201,0,0,0.368277635987565,0.316462387440884,1.90129757680748,3.82687739937078,4.40283155567589,4.04383072127382,4.05477610672067,3.05378614724452,3.42015292489498,3.38158351238453,3.47061892152804,0,0.546138611262131,0,0.853460445133014,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.318565414324097,0,0,0.301150238155546,0.383959833463255,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.130979075497713,0,0,0.649094787309367,0.870648686496336,0.930705723632056,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.462985512576611,0,0,0,0,0.234004265139238,0.445893486866185,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.128343036279748,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.6541442089831,1.2942852049117,1.81436848265855,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206082023295445,0,0,0,0.650060246036521,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30982349809975,0,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,2.02979043692868,0,0,1.42939065274673,0.411362273086194,1.94541993357815,0.540031437238115,1.58625035258854,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0986434056369336,2.3948309234694,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.533034776018635,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.15667522279512,0,0,0.379119477770928,0,0,0,0,0,0,0,0,0,0,0,0.698906672968121,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0607495566580247,0,0,0,0,0,0,0,0,0,0,0,0,0,0.082092520749339,0,0,0,0,0,0,0,0,1.06787412567695,0,3.31391244277756,0,0,0,0,0.544017803369474,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0691572524642179,0,0,0,0,0,0,0,0,0,0.0752103283492573,0,0,0,0,0,0,0,0,0.0634158101939068,0,0,0,0,0,0,0,0,0.227662191351298,0,0,0,0,0.131545547125698,0,0,0.235479278551542,0,0,0,0,0,0.0714765441766563,0,0,0,0,0,0,1.38251932362818,0,0,0,0.846774100381858,0.22910686854405,0,0,0,0,0,0,0,0,0.971421986118279,0,0,0,0,0,0,0.0771741581079447,0,0,0,0,0,0,0,0,0.281951753939561,0.0644578879735772,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.303114792872958,0.267964130156178,0,0,0,0,0.775066918032073,0.806971285846153,0,0.0636471582781649,0,0,0,0.0673520530145875,0.0717222053926763,0,0,0,0,0,0,0.122241444182866,0.406896178315738,0,0.402547587182052,0 | ||
|short_description=p3@SLC46A2 | |short_description=p3@SLC46A2 | ||
}} | }} |
Latest revision as of 06:08, 20 September 2015
Short description: | p3@SLC46A2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_SLC46A2_5end |
Coexpression cluster: | C4790_CD14_ductus_CD14CD16_blood_lung_Whole_thymus |
Association with transcript: | -29bp_to_ENST00000491462_5end |
EntrezGene: | SLC46A2 |
HGNC: | 16055 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
intermediate monocyte | 1.52e-59 | 9 |
CD14-positive, CD16-positive monocyte | 1.52e-59 | 9 |
classical monocyte | 3.46e-43 | 42 |
CD14-positive, CD16-negative classical monocyte | 3.46e-43 | 42 |
defensive cell | 2.27e-37 | 48 |
phagocyte | 2.27e-37 | 48 |
monopoietic cell | 3.19e-29 | 59 |
monocyte | 3.19e-29 | 59 |
monoblast | 3.19e-29 | 59 |
promonocyte | 3.19e-29 | 59 |
macrophage dendritic cell progenitor | 3.60e-28 | 61 |
myeloid leukocyte | 2.36e-26 | 72 |
myeloid lineage restricted progenitor cell | 8.15e-26 | 66 |
granulocyte monocyte progenitor cell | 2.19e-25 | 67 |
non-classical monocyte | 1.59e-21 | 3 |
CD14-low, CD16-positive monocyte | 1.59e-21 | 3 |
single nucleate cell | 2.56e-20 | 3 |
mononuclear cell | 2.56e-20 | 3 |
nongranular leukocyte | 2.68e-19 | 115 |
leukocyte | 1.57e-17 | 136 |
myeloid cell | 1.83e-16 | 108 |
common myeloid progenitor | 1.83e-16 | 108 |
hematopoietic stem cell | 1.98e-13 | 168 |
hematopoietic lineage restricted progenitor cell | 8.90e-13 | 120 |
hematopoietic cell | 1.53e-12 | 177 |
hematopoietic oligopotent progenitor cell | 6.64e-10 | 161 |
hematopoietic multipotent progenitor cell | 6.64e-10 | 161 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 7.18e-38 | 98 |
blood island | 7.18e-38 | 98 |
hemolymphoid system | 5.57e-34 | 108 |
blood | 4.28e-27 | 15 |
haemolymphatic fluid | 4.28e-27 | 15 |
organism substance | 4.28e-27 | 15 |
bone marrow | 5.07e-22 | 76 |
bone element | 3.49e-20 | 82 |
skeletal element | 4.13e-18 | 90 |
immune system | 2.01e-17 | 93 |
lateral plate mesoderm | 5.30e-16 | 203 |
skeletal system | 5.57e-16 | 100 |
mesoderm | 1.17e-09 | 315 |
mesoderm-derived structure | 1.17e-09 | 315 |
presumptive mesoderm | 1.17e-09 | 315 |
lower lobe of right lung | 2.90e-08 | 1 |
right lung lobe | 2.90e-08 | 1 |
lower lobe of lung | 2.90e-08 | 1 |
lobe of lung | 2.90e-08 | 1 |
right lung | 2.90e-08 | 1 |
musculoskeletal system | 2.92e-08 | 167 |
vas deferens | 3.11e-08 | 1 |
spermatic cord | 3.11e-08 | 1 |