FFCP PHASE1:Hg19::chr18:67624420..67624431,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(6 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=10666 | |EntrezGene=10666 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=16961 | |HGNC=16961 | ||
|TSSclassifier=strong | |||
|UniProt=Q15762 | |UniProt=Q15762 | ||
|association_with_transcript=-188bp_to_NM_006566,uc002lkm.3_5end | |association_with_transcript=-188bp_to_NM_006566,uc002lkm.3_5end | ||
|cluster_id=chr18:67624420..67624431,- | |||
|coexpression_cluster_id=C18 | |coexpression_cluster_id=C18 | ||
|description=CAGE_peak_6_at_CD226_5end | |description=CAGE_peak_6_at_CD226_5end | ||
|id=chr18:67624420..67624431,- | |id=chr18:67624420..67624431,- | ||
|ontology_enrichment_celltype=CL:0002087!1.31e-26!119;CL:0000738!2.95e-23!140;CL:0000791!3.81e-22!18;CL:0000789!3.81e-22!18;CL:0002420!3.81e-22!18;CL:0002419!3.81e-22!18;CL:0000790!3.81e-22!18;CL:0002031!3.59e-21!124;CL:0000084!1.58e-18!25;CL:0000827!1.58e-18!25;CL:0000625!8.95e-18!11;CL:0000037!1.69e-16!172;CL:0000566!1.69e-16!172;CL:0000988!1.15e-14!182;CL:0002032!2.25e-14!165;CL:0000837!2.25e-14!165;CL:0002194!2.00e-12!63;CL:0000576!2.00e-12!63;CL:0000040!2.00e-12!63;CL:0000559!2.00e-12!63;CL:0000838!5.50e-12!52;CL:0002009!8.51e-12!65;CL:0000542!1.27e-11!53;CL:0000051!1.27e-11!53;CL:0000839!2.16e-10!70;CL:0000557!3.88e-10!71;CL:0000766!7.06e-10!76;CL:0002057!1.11e-08!42;CL:0000860!9.12e-08!45;CL:0000624!9.32e-08!6 | |ontology_enrichment_celltype=CL:0002087!1.31e-26!119;CL:0000738!2.95e-23!140;CL:0000791!3.81e-22!18;CL:0000789!3.81e-22!18;CL:0002420!3.81e-22!18;CL:0002419!3.81e-22!18;CL:0000790!3.81e-22!18;CL:0002031!3.59e-21!124;CL:0000084!1.58e-18!25;CL:0000827!1.58e-18!25;CL:0000625!8.95e-18!11;CL:0000037!1.69e-16!172;CL:0000566!1.69e-16!172;CL:0000988!1.15e-14!182;CL:0002032!2.25e-14!165;CL:0000837!2.25e-14!165;CL:0002194!2.00e-12!63;CL:0000576!2.00e-12!63;CL:0000040!2.00e-12!63;CL:0000559!2.00e-12!63;CL:0000838!5.50e-12!52;CL:0002009!8.51e-12!65;CL:0000542!1.27e-11!53;CL:0000051!1.27e-11!53;CL:0000839!2.16e-10!70;CL:0000557!3.88e-10!71;CL:0000766!7.06e-10!76;CL:0002057!1.11e-08!42;CL:0000860!9.12e-08!45;CL:0000624!9.32e-08!6 | ||
|ontology_enrichment_celltype_v019=CL:0000791;9.21e-38;18!CL:0000789;9.21e-38;18!CL:0002419;9.21e-38;18!CL:0000084;2.76e-30;25!CL:0000625;3.81e-26;11!CL:0000624;1.24e-15;6!CL:0000226;5.09e-11;3!CL:0000842;5.09e-11;3!CL:0000542;3.47e-08;53 | |||
|ontology_enrichment_celltype_v019_2=CL:0000791,4.11e-38,18;CL:0000789,4.11e-38,18;CL:0002420,4.11e-38,18;CL:0002419,4.11e-38,18;CL:0000790,4.11e-38,18;CL:0000084,1.34e-30,25;CL:0000827,1.34e-30,25;CL:0000625,3.37e-26,11;CL:0002087,3.60e-16,115;CL:0000624,5.89e-16,6;CL:0000838,1.19e-14,52;CL:0000542,2.66e-14,53;CL:0000051,2.66e-14,53;CL:0000738,7.32e-14,136;CL:0002031,1.93e-11,120;CL:0000226,2.42e-11,3;CL:0000842,2.42e-11,3;CL:0000037,5.57e-10,168;CL:0000988,3.78e-09,177;CL:0002032,5.99e-08,161;CL:0000837,5.99e-08,161 | |||
|ontology_enrichment_development_v019=CL:0000790;9.21e-38;18!CL:0000051;3.47e-08;53 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!1.97e-16!102;UBERON:0003061!1.97e-16!102;UBERON:0007023!8.77e-16!115;UBERON:0002193!9.06e-16!112;UBERON:0002780!1.39e-10!41;UBERON:0001890!1.39e-10!41;UBERON:0006240!1.39e-10!41;UBERON:0001049!1.91e-10!57;UBERON:0005068!1.91e-10!57;UBERON:0006241!1.91e-10!57;UBERON:0007135!1.91e-10!57;UBERON:0003080!3.35e-10!42;UBERON:0001893!8.84e-10!34;UBERON:0002020!9.82e-10!34;UBERON:0003528!9.82e-10!34;UBERON:0002791!4.92e-09!33;UBERON:0002616!7.82e-09!59;UBERON:0001869!2.08e-08!32;UBERON:0002371!3.74e-08!80;UBERON:0002308!4.11e-08!9;UBERON:0000125!4.11e-08!9;UBERON:0002405!4.65e-08!115;UBERON:0000178!9.41e-08!15;UBERON:0000179!9.41e-08!15;UBERON:0000463!9.41e-08!15;UBERON:0001474!4.36e-07!86 | |ontology_enrichment_uberon=UBERON:0002390!1.97e-16!102;UBERON:0003061!1.97e-16!102;UBERON:0007023!8.77e-16!115;UBERON:0002193!9.06e-16!112;UBERON:0002780!1.39e-10!41;UBERON:0001890!1.39e-10!41;UBERON:0006240!1.39e-10!41;UBERON:0001049!1.91e-10!57;UBERON:0005068!1.91e-10!57;UBERON:0006241!1.91e-10!57;UBERON:0007135!1.91e-10!57;UBERON:0003080!3.35e-10!42;UBERON:0001893!8.84e-10!34;UBERON:0002020!9.82e-10!34;UBERON:0003528!9.82e-10!34;UBERON:0002791!4.92e-09!33;UBERON:0002616!7.82e-09!59;UBERON:0001869!2.08e-08!32;UBERON:0002371!3.74e-08!80;UBERON:0002308!4.11e-08!9;UBERON:0000125!4.11e-08!9;UBERON:0002405!4.65e-08!115;UBERON:0000178!9.41e-08!15;UBERON:0000179!9.41e-08!15;UBERON:0000463!9.41e-08!15;UBERON:0001474!4.36e-07!86 | ||
|ontology_enrichment_uberon_v019=UBERON:0000178;5.17e-14;15!UBERON:0000179;5.17e-14;15!UBERON:0000463;5.17e-14;15!UBERON:0002390;1.56e-10;32!UBERON:0002370;6.67e-08;2!UBERON:0005058;6.67e-08;2!UBERON:0009113;6.67e-08;2!UBERON:0004177;8.74e-07;5!UBERON:0005057;8.74e-07;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,3.88e-14,15;UBERON:0000179,3.88e-14,15;UBERON:0000463,3.88e-14,15;UBERON:0002390,1.92e-09,98;UBERON:0003061,1.92e-09,98;UBERON:0002370,8.60e-09,4;UBERON:0005058,8.60e-09,4;UBERON:0009113,8.60e-09,4;UBERON:0003295,8.60e-09,4;UBERON:0005562,8.60e-09,4;UBERON:0004177,2.21e-08,7;UBERON:0005057,2.21e-08,7;UBERON:0002193,3.62e-08,108 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.152826811495903,0,0,0,1.53531759238885,0,0,0,0,0,0,0,0.553995408531877,0.601633342410425,0.868043482863407,0.223915474239924,0.647787332037959,0,0,0.377875943688809,0,0,0.822335776043652,0,0.575384784644301,0.256160706529101,0.236482229888585,0.344745680736619,0,0,0,0,0,0.306083892370903,1.28371610830437,0,0.329851300186716,2.99195486432448,0.426224750532694,0,0,0,0.502497330513487,1.0429658368404,0.217188844705117,0,0.368277635987565,0,0,0,0,0,0,0,0.285012743741249,0,0.547992461293902,0,0.546138611262131,0,0,0,0,0,0,0,0,0,0,0.560508562981536,0,3.93419540227666,1.96505381374582,4.11202997999018,1.5046784585161,0,0.473447805734733,0,3.23090324967003,1.76763544484902,3.54454231333794,1.62482318259009,1.79327847615945,2.86130564631732,2.63100647365882,1.93445012450094,4.05724320029073,5.6348894001583,7.75868401460168,1.04535523804977,3.39928028092699,8.81407135284419,7.55980380061786,7.59059076058509,7.32700452945422,3.90650072313851,1.90090408889675,2.40920190524436,2.94369205655162,4.99722906209383,5.20909954496837,1.64225599384209,0.80642697289893,1.06976078313403,0.724122019413995,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,1.29818957461873,2.78607579678828,0.930705723632056,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.882926198829301,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.246217006087397,0,0.148631162288728,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.2162378064119,1.00451418286425,2.10833939483032,0,0,0,0,0,0,0,1.57624608161542,0.646882724578552,0.77005821767849,0,0,0,0.167516265334349,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.86091223510599,1.72571360654893,1.70764092485511,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206082023295445,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.376575203107117,0,0,0,0,1.01489521846434,0.764637207142375,0,2.85878130549347,2.46817363851717,1.94541993357815,2.16012574895246,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.390776190804081,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.281338832821026,0,0,0,0.19924798825107,0,0,0,0.738508832766417,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.120596438625408,0,0,0,0,0,0,0.0769502585037971,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.202203398942031,0,0,0,0,0,0,1.20990716048664,0,0.505492637027904,0,0,0,0,0,0,0,0,0,0,0,0.17472666824203,0,0,0,0,0,0,0,0,0,0.0633107959558787,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.20084057741958,0.410716136675979,0,0,0.262887354279314,0,0,0,0,0,0.446342914883745,0,0,0,0,0,0,0,0,0.795229689809303,0.136203406111576,0,0,0,0,0,0.303747783290123,0,0.157611414598396,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146552233678082,0,0.129282956361551,0.26446520348538,0,0,0.213574825135389,0.157204305099666,0,0.992332043623902,1.58089305518355,0,0,0,0,0,0,0,0,0.122026264901963,0,0,0.332787154610557,0.434674820589684,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.276516872303462,0,0,0.490696182767533,0,0,0,2.99981093782395,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.128458450192919,0,0.478901577171454,0,0,0.0691572524642179,0,0,0,0,0,0,0,0,0,0.150420656698515,0,0,0,0,0,0.270150338473579,0,0,0,0,0,0,0,0,0,0,0,0.227662191351298,0.0887023701626388,0,0,0,0.131545547125698,0,0,0,0.157115589916002,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.154348316215889,0,0,0,0,1.76677620403451,0,0,0,0.563903507879121,1.28915775947154,0,0,0,0,0,0,0.143339583151451,0,0.0679914901909147,0,0.5290268405154,0,0,0,0,0,0,0,0,0,0,0,0,3.31667775783512,0.20686599172379,0,0.23806443146374,1.16260037704811,1.67601728598816,0,0,0,0,0,0.875576689189638,0,0.332660356546013,0,0,0,0,0,0.122241444182866,0,0,0.805095174364105,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.152826811495903,0,0,0,1.53531759238885,0,0,0,0,0,0,0,0.553995408531877,0.601633342410425,0.868043482863407,0.223915474239924,0.647787332037959,0,0,0.377875943688809,0,0,0.822335776043652,0,0.575384784644301,0.256160706529101,0.236482229888585,0.344745680736619,0,0,0,0,0,0.306083892370903,1.28371610830437,0,0.329851300186716,2.99195486432448,0.426224750532694,0,0,0,0.502497330513487,1.0429658368404,0.217188844705117,0,0.368277635987565,0,0,0,0,0,0,0,0.285012743741249,0,0.547992461293902,0,0.546138611262131,0,0,0,0,0,0,0,0,0,0,0.560508562981536,0,3.93419540227666,1.96505381374582,4.11202997999018,1.5046784585161,0,0.473447805734733,0,3.23090324967003,1.76763544484902,3.54454231333794,1.62482318259009,1.79327847615945,2.86130564631732,2.63100647365882,1.93445012450094,4.05724320029073,5.6348894001583,7.75868401460168,1.04535523804977,3.39928028092699,8.81407135284419,7.55980380061786,7.59059076058509,7.32700452945422,3.90650072313851,1.90090408889675,2.40920190524436,2.94369205655162,4.99722906209383,5.20909954496837,1.64225599384209,0.80642697289893,1.06976078313403,0.724122019413995,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,1.29818957461873,2.78607579678828,0.930705723632056,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.882926198829301,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.246217006087397,0,0.148631162288728,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.2162378064119,1.00451418286425,2.10833939483032,0,0,0,0,0,0,0,1.57624608161542,0.646882724578552,0.77005821767849,0,0,0,0.167516265334349,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.86091223510599,1.72571360654893,1.70764092485511,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206082023295445,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.376575203107117,0,0,0,0,1.01489521846434,0.764637207142375,0,2.85878130549347,2.46817363851717,1.94541993357815,2.16012574895246,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.390776190804081,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.281338832821026,0,0,0,0.19924798825107,0,0,0,0.738508832766417,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.120596438625408,0,0,0,0,0,0,0.0769502585037971,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.202203398942031,0,0,0,0,0,0,1.20990716048664,0,0.505492637027904,0,0,0,0,0,0,0,0,0,0,0,0.17472666824203,0,0,0,0,0,0,0,0,0,0.0633107959558787,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.20084057741958,0.410716136675979,0,0,0.262887354279314,0,0,0,0,0,0.446342914883745,0,0,0,0,0,0,0,0,0.795229689809303,0.136203406111576,0,0,0,0,0,0.303747783290123,0,0.157611414598396,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146552233678082,0,0.129282956361551,0.26446520348538,0,0,0.213574825135389,0.157204305099666,0,0.992332043623902,1.58089305518355,0,0,0,0,0,0,0,0,0.122026264901963,0,0,0.332787154610557,0.434674820589684,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.276516872303462,0,0,0.490696182767533,0,0,0,2.99981093782395,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.128458450192919,0,0.478901577171454,0,0,0.0691572524642179,0,0,0,0,0,0,0,0,0,0.150420656698515,0,0,0,0,0,0.270150338473579,0,0,0,0,0,0,0,0,0,0,0,0.227662191351298,0.0887023701626388,0,0,0,0.131545547125698,0,0,0,0.157115589916002,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.154348316215889,0,0,0,0,1.76677620403451,0,0,0,0.563903507879121,1.28915775947154,0,0,0,0,0,0,0.143339583151451,0,0.0679914901909147,0,0.5290268405154,0,0,0,0,0,0,0,0,0,0,0,0,3.31667775783512,0.20686599172379,0,0.23806443146374,1.16260037704811,1.67601728598816,0,0,0,0,0,0.875576689189638,0,0.332660356546013,0,0,0,0,0,0.122241444182866,0,0,0.805095174364105,0 | ||
|short_description=p6@CD226 | |short_description=p6@CD226 | ||
}} | }} |
Latest revision as of 06:51, 20 September 2015
Short description: | p6@CD226 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_CD226_5end |
Coexpression cluster: | C18_CD4_CD8_thymus_Whole_Peripheral_Natural_blood |
Association with transcript: | -188bp_to_NM_006566, uc002lkm.3_5end |
EntrezGene: | CD226 |
HGNC: | 16961 |
UniProt: | Q15762 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mature alpha-beta T cell | 4.11e-38 | 18 |
alpha-beta T cell | 4.11e-38 | 18 |
immature T cell | 4.11e-38 | 18 |
mature T cell | 4.11e-38 | 18 |
immature alpha-beta T cell | 4.11e-38 | 18 |
T cell | 1.34e-30 | 25 |
pro-T cell | 1.34e-30 | 25 |
CD8-positive, alpha-beta T cell | 3.37e-26 | 11 |
nongranular leukocyte | 3.60e-16 | 115 |
CD4-positive, alpha-beta T cell | 5.89e-16 | 6 |
lymphoid lineage restricted progenitor cell | 1.19e-14 | 52 |
lymphocyte | 2.66e-14 | 53 |
common lymphoid progenitor | 2.66e-14 | 53 |
leukocyte | 7.32e-14 | 136 |
hematopoietic lineage restricted progenitor cell | 1.93e-11 | 120 |
single nucleate cell | 2.42e-11 | 3 |
mononuclear cell | 2.42e-11 | 3 |
hematopoietic stem cell | 5.57e-10 | 168 |
hematopoietic cell | 3.78e-09 | 177 |
hematopoietic oligopotent progenitor cell | 5.99e-08 | 161 |
hematopoietic multipotent progenitor cell | 5.99e-08 | 161 |
Ontology term | p-value | n |
---|---|---|
blood | 3.88e-14 | 15 |
haemolymphatic fluid | 3.88e-14 | 15 |
organism substance | 3.88e-14 | 15 |
hematopoietic system | 1.92e-09 | 98 |
blood island | 1.92e-09 | 98 |
thymus | 8.60e-09 | 4 |
hemolymphoid system gland | 8.60e-09 | 4 |
thymic region | 8.60e-09 | 4 |
pharyngeal gland | 8.60e-09 | 4 |
thymus primordium | 8.60e-09 | 4 |
hemopoietic organ | 2.21e-08 | 7 |
immune organ | 2.21e-08 | 7 |
hemolymphoid system | 3.62e-08 | 108 |