FFCP PHASE1:Hg19::chr19:6393377..6393394,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr19:6393377..6393394,-
|short_description=p5@GTF2F1
|description=CAGE_peak_5_at_GTF2F1_5end
|association_with_transcript=76bp_to_ENST00000394456_5end
|Entrez...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=2962 | |EntrezGene=2962 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4652 | |HGNC=4652 | ||
|TSSclassifier=strong | |||
|UniProt=P35269 | |UniProt=P35269 | ||
|association_with_transcript=76bp_to_ENST00000394456_5end | |||
|cluster_id=chr19:6393377..6393394,- | |||
|description=CAGE_peak_5_at_GTF2F1_5end | |||
|id=chr19:6393377..6393394,- | |||
|ontology_enrichment_celltype=CL:0000988!5.96e-21!182;CL:0000037!4.44e-20!172;CL:0000566!4.44e-20!172;CL:0002057!5.30e-20!42;CL:0000763!7.18e-20!112;CL:0000049!7.18e-20!112;CL:0002032!3.71e-19!165;CL:0000837!3.71e-19!165;CL:0000144!1.33e-18!625;CL:0000012!7.17e-18!682;CL:0000860!8.40e-17!45;CL:0000548!1.38e-16!679;CL:0000004!1.38e-16!679;CL:0000255!1.38e-16!679;CL:0000738!2.73e-16!140;CL:0000766!6.74e-16!76;CL:0000034!9.43e-16!444;CL:0000003!1.45e-15!722;CL:0002371!2.36e-15!591;CL:0000723!1.14e-14!436;CL:0000557!2.32e-14!71;CL:0002009!2.33e-14!65;CL:0000048!2.55e-14!430;CL:0000839!9.92e-14!70;CL:0002031!1.15e-13!124;CL:0002194!2.04e-13!63;CL:0000576!2.04e-13!63;CL:0000040!2.04e-13!63;CL:0000559!2.04e-13!63;CL:0000063!9.34e-13!578;CL:0000134!9.73e-13!358;CL:0002087!2.05e-12!119;CL:0000219!5.65e-12!390;CL:0002320!8.34e-12!365 | |||
|ontology_enrichment_celltype_v019=CL:0000860;8.76e-17;33!CL:0002057;8.76e-17;33!CL:0000473;3.10e-13;39!CL:0000234;3.10e-13;39!CL:0000576;1.72e-12;48!CL:0000766;6.78e-10;69!CL:0000763;2.52e-08;100 | |||
|ontology_enrichment_celltype_v019_2=CL:0000988,8.24e-26,177;CL:0000763,3.10e-25,108;CL:0000049,3.10e-25,108;CL:0000037,4.25e-25,168;CL:0002032,2.85e-24,161;CL:0000837,2.85e-24,161;CL:0000860,1.48e-21,42;CL:0002057,1.48e-21,42;CL:0000766,9.21e-21,72;CL:0000473,1.25e-20,48;CL:0000234,1.25e-20,48;CL:0000738,1.62e-20,136;CL:0002009,4.66e-19,61;CL:0000557,5.13e-19,67;CL:0000839,2.92e-18,66;CL:0002031,5.52e-18,120;CL:0002194,5.99e-18,59;CL:0000576,5.99e-18,59;CL:0000040,5.99e-18,59;CL:0000559,5.99e-18,59;CL:0002087,5.55e-16,115;CL:0000034,6.25e-16,441;CL:0000723,4.65e-15,433;CL:0000048,7.04e-15,427;CL:0000134,8.96e-14,354;CL:0002320,6.30e-13,361;CL:0000219,2.87e-12,386 | |||
|ontology_enrichment_development_v019=CL:0002057;6.54e-16;42!CL:0000049;2.02e-07;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001474!6.17e-13!86;UBERON:0002371!1.17e-12!80;UBERON:0002384!6.28e-10!375;UBERON:0004765!1.72e-09!101;UBERON:0001434!1.72e-09!101;UBERON:0002390!3.00e-09!102;UBERON:0003061!3.00e-09!102;UBERON:0002204!3.21e-07!167;UBERON:0002193!7.80e-07!112 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001474,4.85e-17,82;UBERON:0002371,5.63e-17,76;UBERON:0004765,1.36e-14,90;UBERON:0002390,1.26e-12,98;UBERON:0003061,1.26e-12,98;UBERON:0001434,1.07e-11,100;UBERON:0002405,1.86e-11,93;UBERON:0002384,2.35e-11,371;UBERON:0002193,2.72e-09,108;UBERON:0002204,8.57e-09,167 | |||
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| ||
|short_description=p5@GTF2F1 | |||
}} | }} |
Latest revision as of 15:44, 24 September 2015
Short description: | p5@GTF2F1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_GTF2F1_5end |
Coexpression cluster: | NA |
Association with transcript: | 76bp_to_ENST00000394456_5end |
EntrezGene: | GTF2F1 |
HGNC: | 4652 |
UniProt: | P35269 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic cell | 8.24e-26 | 177 |
myeloid cell | 3.10e-25 | 108 |
common myeloid progenitor | 3.10e-25 | 108 |
hematopoietic stem cell | 4.25e-25 | 168 |
hematopoietic oligopotent progenitor cell | 2.85e-24 | 161 |
hematopoietic multipotent progenitor cell | 2.85e-24 | 161 |
classical monocyte | 1.48e-21 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.48e-21 | 42 |
myeloid leukocyte | 9.21e-21 | 72 |
defensive cell | 1.25e-20 | 48 |
phagocyte | 1.25e-20 | 48 |
leukocyte | 1.62e-20 | 136 |
macrophage dendritic cell progenitor | 4.66e-19 | 61 |
granulocyte monocyte progenitor cell | 5.13e-19 | 67 |
myeloid lineage restricted progenitor cell | 2.92e-18 | 66 |
hematopoietic lineage restricted progenitor cell | 5.52e-18 | 120 |
monopoietic cell | 5.99e-18 | 59 |
monocyte | 5.99e-18 | 59 |
monoblast | 5.99e-18 | 59 |
promonocyte | 5.99e-18 | 59 |
nongranular leukocyte | 5.55e-16 | 115 |
stem cell | 6.25e-16 | 441 |
somatic stem cell | 4.65e-15 | 433 |
multi fate stem cell | 7.04e-15 | 427 |
mesenchymal cell | 8.96e-14 | 354 |
connective tissue cell | 6.30e-13 | 361 |
motile cell | 2.87e-12 | 386 |
Ontology term | p-value | n |
---|---|---|
bone element | 4.85e-17 | 82 |
bone marrow | 5.63e-17 | 76 |
skeletal element | 1.36e-14 | 90 |
hematopoietic system | 1.26e-12 | 98 |
blood island | 1.26e-12 | 98 |
skeletal system | 1.07e-11 | 100 |
immune system | 1.86e-11 | 93 |
connective tissue | 2.35e-11 | 371 |
hemolymphoid system | 2.72e-09 | 108 |
musculoskeletal system | 8.57e-09 | 167 |