FFCP PHASE1:Hg19::chr12:71031220..71031229,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr12:71031220..71031229,- to FFCP PHASE1:Hg19::chr12:71031220..71031229,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=5787 | |EntrezGene=5787 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9665 | |HGNC=9665 | ||
|TSSclassifier=strong | |||
|UniProt=P23467,Q86VA4 | |UniProt=P23467,Q86VA4 | ||
|association_with_transcript=0bp_to_ENST00000334414,ENST00000552253,NM_001109754_5end | |||
|cluster_id=chr12:71031220..71031229,- | |||
|coexpression_cluster_id=C428 | |||
|description=CAGE_peak_10_at_PTPRB_5end | |||
|id=chr12:71031220..71031229,- | |||
|ontology_enrichment_celltype=CL:0002139!1.01e-41!24;CL:0000115!1.14e-31!35;CL:0000071!3.65e-29!18;CL:0002546!3.65e-29!18;CL:0002078!1.38e-23!44;CL:0000213!1.73e-16!57;CL:0000215!1.73e-16!57;CL:1000413!2.43e-15!9;CL:0005020!3.02e-14!6;CL:0002138!3.02e-14!6;CL:0005022!3.02e-14!6;CL:0002543!9.28e-14!6;CL:0002544!1.69e-09!6;CL:0002618!9.56e-08!3 | |||
|ontology_enrichment_celltype_v019=CL:0002139;1.05e-115;24!CL:0000071;1.30e-74;18!CL:0000115;9.28e-65;36!CL:0002138;8.99e-44;6!CL:0002543;4.85e-42;6!CL:0002078;4.40e-39;45!CL:1000413;2.86e-38;9!CL:0000213;2.59e-27;58!CL:0000215;2.59e-27;58!CL:0002618;5.18e-22;3!CL:0002544;1.18e-19;6!CL:0000076;2.25e-11;63 | |||
|ontology_enrichment_celltype_v019_2=CL:0002139,4.00e-116,24;CL:0000115,3.06e-76,36;CL:0000071,6.88e-75,18;CL:0002546,6.88e-75,18;CL:0002078,2.82e-60,45;CL:0000213,5.96e-46,58;CL:0000215,5.96e-46,58;CL:0005020,6.49e-44,6;CL:0002138,6.49e-44,6;CL:0005022,6.49e-44,6;CL:0002543,2.84e-42,6;CL:1000413,2.79e-38,9;CL:0002618,3.76e-22,3;CL:0000222,4.40e-20,121;CL:0002544,1.15e-19,6;CL:0000076,1.49e-19,63;CL:0002321,1.18e-07,250;CL:0000066,1.30e-07,253 | |||
|ontology_enrichment_development_v019=CL:0002546;1.30e-74;18!CL:0005022;8.99e-44;6!UBERON:0010226;2.55e-08;1!UBERON:0005062;4.46e-08;4!UBERON:0007284;4.46e-08;4 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:3371;7.84e-09;1!DOID:4549;7.84e-09;1!DOID:5861;7.84e-09;1!DOID:6496;7.84e-09;1 | |||
|ontology_enrichment_disease_v019_2=DOID:3371,7.01e-09,1;DOID:4549,7.01e-09,1;DOID:5861,7.01e-09,1;DOID:6496,7.01e-09,1 | |||
|ontology_enrichment_uberon=UBERON:0001986!3.65e-29!18;UBERON:0004638!3.65e-29!18;UBERON:0004852!3.65e-29!18;UBERON:0007023!4.64e-26!115;UBERON:0000487!5.98e-23!22;UBERON:0006914!1.32e-19!25;UBERON:0004111!6.74e-16!241;UBERON:0003915!2.43e-15!9;UBERON:0004700!2.43e-15!9;UBERON:0001917!2.43e-15!9;UBERON:0000055!5.28e-15!69;UBERON:0000477!5.42e-15!286;UBERON:0000025!1.05e-13!194;UBERON:0002049!3.87e-12!79;UBERON:0007798!3.87e-12!79;UBERON:0004872!1.49e-11!84;UBERON:0001009!4.37e-11!113;UBERON:0002465!2.02e-10!10;UBERON:0001473!2.04e-10!8;UBERON:0004536!2.04e-10!8;UBERON:0006558!2.04e-10!8;UBERON:0004535!7.34e-10!110;UBERON:0001981!1.41e-09!60;UBERON:0007500!1.41e-09!60;UBERON:0004537!1.41e-09!60;UBERON:0006965!1.41e-09!60;UBERON:0001638!7.84e-09!9;UBERON:0003920!7.84e-09!9;UBERON:0004582!7.84e-09!9;UBERON:0003914!3.49e-08!118;UBERON:0000483!1.33e-07!309;UBERON:0004151!1.90e-07!3;UBERON:0000119!2.11e-07!312;UBERON:0003978!3.72e-07!3;UBERON:0009751!3.72e-07!3;UBERON:0000946!3.72e-07!3;UBERON:0002523!3.72e-07!3;UBERON:0005983!3.72e-07!3;UBERON:0002165!3.72e-07!3;UBERON:0002062!3.72e-07!3;UBERON:0007280!3.72e-07!3 | |||
|ontology_enrichment_uberon_v019=UBERON:0004638;1.30e-74;18!UBERON:0001986;1.30e-74;18!UBERON:0004852;1.30e-74;18!UBERON:0000487;1.36e-60;22!UBERON:0006914;5.07e-53;25!UBERON:0003915;2.86e-38;9!UBERON:0004700;2.86e-38;9!UBERON:0001917;2.86e-38;9!UBERON:0000490;1.30e-36;33!UBERON:0001473;9.72e-33;8!UBERON:0004536;9.72e-33;8!UBERON:0006558;9.72e-33;8!UBERON:0001638;6.50e-28;9!UBERON:0003920;6.50e-28;9!UBERON:0004582;6.50e-28;9!UBERON:0002465;4.14e-26;10!UBERON:0000055;2.92e-21;65!UBERON:0002405;3.89e-16;27!UBERON:0002133;2.88e-15;2!UBERON:0002049;6.80e-15;75!UBERON:0007798;6.80e-15;75!UBERON:0007500;4.37e-14;56!UBERON:0001981;4.37e-14;56!UBERON:0004537;4.37e-14;56!UBERON:0002066;1.91e-13;5!UBERON:0003914;1.68e-10;74!UBERON:0003978;1.74e-10;3!UBERON:0004151;1.74e-10;3!UBERON:0000946;1.74e-10;3!UBERON:0004535;2.10e-10;109!UBERON:0002106;2.87e-10;3!UBERON:0001009;2.66e-09;112!UBERON:0004111;6.67e-09;130!UBERON:0002134;1.18e-08;1!UBERON:0005208;1.18e-08;1!UBERON:0004145;1.18e-08;1!UBERON:0005946;1.18e-08;1!UBERON:0005965;1.18e-08;1!UBERON:0002078;1.18e-08;1!UBERON:0002084;2.55e-08;1!UBERON:0002135;2.55e-08;1!UBERON:0002082;2.55e-08;1!UBERON:0002193;3.64e-08;42!UBERON:0001637;4.10e-08;42!UBERON:0003509;4.10e-08;42!UBERON:0004572;4.10e-08;42!UBERON:0010260;1.09e-07;9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004638,6.88e-75,18;UBERON:0001986,6.88e-75,18;UBERON:0004852,6.88e-75,18;UBERON:0000487,8.06e-61,22;UBERON:0006914,3.21e-53,25;UBERON:0000055,3.44e-47,68;UBERON:0002049,1.22e-40,78;UBERON:0007798,1.22e-40,78;UBERON:0003915,2.79e-38,9;UBERON:0004700,2.79e-38,9;UBERON:0001917,2.79e-38,9;UBERON:0001473,7.63e-33,8;UBERON:0004536,7.63e-33,8;UBERON:0006558,7.63e-33,8;UBERON:0004535,9.62e-31,109;UBERON:0001009,8.24e-30,112;UBERON:0001638,4.57e-28,9;UBERON:0003920,4.57e-28,9;UBERON:0004582,4.57e-28,9;UBERON:0007500,7.90e-28,59;UBERON:0001981,7.90e-28,59;UBERON:0004537,7.90e-28,59;UBERON:0006965,7.90e-28,59;UBERON:0004872,3.28e-27,83;UBERON:0002465,3.41e-26,10;UBERON:0002133,3.99e-15,2;UBERON:0003914,2.72e-14,117;UBERON:0002066,1.57e-13,5;UBERON:0004111,1.31e-11,240;UBERON:0003978,2.16e-10,3;UBERON:0009751,2.16e-10,3;UBERON:0000946,2.16e-10,3;UBERON:0002523,2.16e-10,3;UBERON:0005983,2.16e-10,3;UBERON:0002165,2.16e-10,3;UBERON:0002062,2.16e-10,3;UBERON:0007280,2.16e-10,3;UBERON:0004151,2.38e-10,3;UBERON:0002106,3.16e-10,3;UBERON:0004854,3.16e-10,3;UBERON:0009034,3.16e-10,3;UBERON:0002095,3.16e-10,3;UBERON:0004782,3.16e-10,3;UBERON:0003281,3.16e-10,3;UBERON:0009664,3.16e-10,3;UBERON:0002296,3.16e-10,3;UBERON:0005602,3.16e-10,3;UBERON:0001179,3.16e-10,3;UBERON:0006293,3.16e-10,3;UBERON:0003081,6.27e-09,203;UBERON:0002134,1.37e-08,1;UBERON:0005208,1.37e-08,1;UBERON:0005946,1.37e-08,1;UBERON:0005965,1.37e-08,1;UBERON:0002078,1.37e-08,1;UBERON:0002135,3.06e-08,1;UBERON:0002084,3.53e-08,1;UBERON:0002082,3.53e-08,1;UBERON:0010226,3.53e-08,1;UBERON:0010260,9.81e-08,9;UBERON:0001637,1.38e-07,42;UBERON:0003509,1.38e-07,42;UBERON:0004572,1.38e-07,42;UBERON:0000025,2.18e-07,192;UBERON:0000490,7.95e-07,148 | |||
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| ||
|short_description=p10@PTPRB | |||
}} | }} |
Latest revision as of 16:04, 24 September 2015
Short description: | p10@PTPRB |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_10_at_PTPRB_5end |
Coexpression cluster: | C428_Endothelial_Renal_Lymphatic_Hepatic_adipose_heart_breast |
Association with transcript: | 0bp_to_ENST00000334414, ENST00000552253, NM_001109754_5end |
EntrezGene: | PTPRB |
HGNC: | 9665 |
UniProt: | P23467Q86VA4 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endothelial cell of vascular tree | 4.00e-116 | 24 |
endothelial cell | 3.06e-76 | 36 |
blood vessel endothelial cell | 6.88e-75 | 18 |
embryonic blood vessel endothelial progenitor cell | 6.88e-75 | 18 |
meso-epithelial cell | 2.82e-60 | 45 |
lining cell | 5.96e-46 | 58 |
barrier cell | 5.96e-46 | 58 |
lymphangioblast | 6.49e-44 | 6 |
endothelial cell of lymphatic vessel | 6.49e-44 | 6 |
vascular lymphangioblast | 6.49e-44 | 6 |
vein endothelial cell | 2.84e-42 | 6 |
endothelial cell of artery | 2.79e-38 | 9 |
endothelial cell of umbilical vein | 3.76e-22 | 3 |
mesodermal cell | 4.40e-20 | 121 |
aortic endothelial cell | 1.15e-19 | 6 |
squamous epithelial cell | 1.49e-19 | 63 |
embryonic cell | 1.18e-07 | 250 |
epithelial cell | 1.30e-07 | 253 |
Ontology term | p-value | n |
---|---|---|
chondrosarcoma | 7.01e-09 | 1 |
extraosseous chondrosarcoma | 7.01e-09 | 1 |
myxoid chondrosarcoma | 7.01e-09 | 1 |
extraskeletal myxoid chondrosarcoma | 7.01e-09 | 1 |